mRNA_H-canaliculatus_F_contig1117.1054.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1117.1054.1
Unique NamemRNA_H-canaliculatus_F_contig1117.1054.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1117.1054.1 vs. uniprot
Match: A0A6H5KZ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ31_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.440e-17
Identity = 122/329 (37.08%), Postives = 150/329 (45.59%), Query Frame = 1 
Query:  196 MATGLSFSSATPAGKQHMSHVSYAGNGG--VGNGRDLRGGA-TDVNGEPIIDDGGRPVAVGGDAEGGSGGIAGDG--------GDNLHRQSAARSDYNGVFPTAPTVARLSAIPTAASANSVSNYSTSNNGGGSHVCGTTTTSLRAVGPGGYSQRAADEALRNNSLGLTLSDVSGMNMGMAAAMLVGGMNNVNTAGPADSMSRRGTGVVASEAGGVPPVSMPFMGAGAGSAGMLVQPGALAGAPAVMRDVEGGGGRGRREKGSSLDSNAXXXXXXXXXGLTTHWGVGHGMDRT-ADGGDLGGVDGNGGGTSKRRKMNTTVSLPTSAAAT 1146
            MATGLSFSS    GKQH+ H  Y GNG   VG  +D +GG   DV+G  + D   R VA          G  GDG        GDN H  S       G     P VA    +P  +S+ + S+ S + N GGS   G  T S   +  G Y     D  +R+N  GL+ SDVS MNMGMAAAML GGMN +    P  +M  R T  VAS  GG  P+ M  +  G G  G +  P   A A A MR+        + + G+  +  A              W     M RT  D G+ G  DG+G G +KRRK   T SLP    AT
Sbjct:    1 MATGLSFSS----GKQHLPHGPYGGNGSNAVGRVKDSQGGGGVDVDGGSVGDVNRRTVA----------GREGDGXXXXXXXVGDNTHIHSTTNRQVYGSNAIGPLVAGR--LPLPSSSTNASSMSNNGNSGGSTAAGVVTNSFPGMSAG-YPPPRVD--IRSNPPGLSASDVSSMNMGMAAAML-GGMNGI----PPGAMFGRATTSVAS--GGGMPMGM-VVPTGGGIGGGV--PXXXAVASAAMREXXXXXXXXQGQHGAGAEPGAARSAAGA---FMADWSERPDMGRTDIDVGEEG--DGSGTGANKRRKTTPTPSLPPPNLAT 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1117.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ31_9PHAE2.440e-1737.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1117contigH-canaliculatus_F_contig1117:9582..13439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1339
Cds size1335
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.071137-CDS-H-canaliculatus_F_contig1117:9581..98131622928795.071137-CDS-H-canaliculatus_F_contig1117:9581..9813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 9582..9813 +
1696845567.2689464-CDS-H-canaliculatus_F_contig1117:9581..98131696845567.2689464-CDS-H-canaliculatus_F_contig1117:9581..9813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 9582..9813 +
1622928795.0893319-CDS-H-canaliculatus_F_contig1117:12334..134371622928795.0893319-CDS-H-canaliculatus_F_contig1117:12334..13437Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 12335..13437 +
1696845567.2839575-CDS-H-canaliculatus_F_contig1117:12334..134371696845567.2839575-CDS-H-canaliculatus_F_contig1117:12334..13437Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 12335..13437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1117.1054.1prot_H-canaliculatus_F_contig1117.1054.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1117 9582..13437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1117.1054.1

>prot_H-canaliculatus_F_contig1117.1054.1 ID=prot_H-canaliculatus_F_contig1117.1054.1|Name=mRNA_H-canaliculatus_F_contig1117.1054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=445bp
GARERLHHRVRERQAASAGGEELAEESNNLKRGAVRRKESDTLSTDRPKG
QSKSRRPRARDDSVTMATGLSFSSATPAGKQHMSHVSYAGNGGVGNGRDL
RGGATDVNGEPIIDDGGRPVAVGGDAEGGSGGIAGDGGDNLHRQSAARSD
YNGVFPTAPTVARLSAIPTAASANSVSNYSTSNNGGGSHVCGTTTTSLRA
VGPGGYSQRAADEALRNNSLGLTLSDVSGMNMGMAAAMLVGGMNNVNTAG
PADSMSRRGTGVVASEAGGVPPVSMPFMGAGAGSAGMLVQPGALAGAPAV
MRDVEGGGGRGRREKGSSLDSNAASTIAAGGGGLTTHWGVGHGMDRTADG
GDLGGVDGNGGGTSKRRKMNTTVSLPTSAAATLLPPLPPPLPLPPPPPLP
PQHHHHQHQHHHQHQHQQHLLLQEDIKKPIPMHINGAMAHSSPGG
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mRNA from alignment at H-canaliculatus_F_contig1117:9582..13439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1117.1054.1 ID=mRNA_H-canaliculatus_F_contig1117.1054.1|Name=mRNA_H-canaliculatus_F_contig1117.1054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1117:9582..13439+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGCGAGAGAGAGGCTTCACCACCGAGTGCGAGAGAGGCAGGCAGCTTC
GGCAGGGGGAGAGGAACTTGCAGAAGAATCCAACAATCTCAAGAGAGGGG
CCGTACGACGGAAAGAGTCGGATACTCTCTCCACAGACCGCCCGAAGGGT
CAGAGTAAATCAAGACGGCCCAGGGCACGGGACGACAGCGTTACCATGGC
AACGGGTCTATCTTTTTCCTCGGCAACACCGGGTGAGAGCATAGTGCTGT
ATGTACACGGGCCCGGTGCACCTTAGCACTTGCCCACGTGCTGAACGTAC
GCGCCAAACACAGGCATCGGAGTCCAGAGGGGTAAAAAAATGCTGAGAGC
GAGCAGAGTCCATAGTTGCAGCGGTGCAGCACCTTCTTGCCGCACAGGTG
TTGAAAGCTGTCGACCGTTTAACTGGTACGGCCTGTGACATTTTTGTGTG
CCCCCGTCTCTTTGACGAGTGCACCTGGCACCTTCCATTTTCGCCGCTGG
GTGTGCGCATGCCGAGCGGAGTTGAGGAGGCAGATGCACCCATGATGCAC
CCATCCTTATTTGTAGCGTCGCATGATAATCCTCTGTTTGGCATCCAAGA
ACACAATTCCACCATTCCATCCATGTCTACAAAGAGAAATCCATCCGGGG
TGCCAGAATTCGAGGAGCTTGCCTCCTACACCGGCGTCCTACGAGAAGCG
CACAACAGCAGTTAGTATCATTCTATACGTGCATTTCGCCACGATGAATT
GGGGCGGGAAGGTAGCAGTACAGGGATGCCTGCGAACGAGAAGGATGCAA
TGTTGCACATCCTCAAATCGGGTTGCACGAAAGGCGCGTATTTGTCGAAC
AGGGGCGCTTCTCCGTGCAGGTCTCCTTCCGTGATGTGCCCTCTCCCTCC
CGGCGGAAGTGACGAAAAGTCAAATGGATTTGGAGGATGGACAGAGCCTC
TCGCGTAGAGATCGAAGTTTGCCGTGCCAAAAAATTATTAACAGACCCGC
TCGGCGACGAGGAACACCGCAGACTAGTGCAAGTTGGATTCTTCACGACG
AACGAAGAACACAACACTTTAATTTTTACTACTGCCGTTTACAGCAGGAC
AAGTATGTAACGGAGATGAGGCATCAAATAGTAGTTCAGATGTACGAGCA
GACCTATCCAACGTCTCAACGTATACTTCGCTAAATGAAAGTGTCGGTAG
GGAAAGTCTGGGAGAAAAAGCATTATTGAGTGCAGAAAACTTGTTCGACG
GCAACGTGCCACCCTCGTGCCACCCTTGACGACCGGGTTTATCAACTACC
GCGTGCATCATCAGCGGTTGCAGGCGGAGATGCAGCAGTCCGGCAGCCAA
TAGCGACTAAAGGAAAAGCTGGCAGCAGGTCGATGGCGGCTCTTGATAGT
TATCTTTTTTTTATAGCACGTGGTAACGTTCCCCCTGCTCGTTCACGAAC
AGCAATTCCATCCGACGCCGCCACAGCGACAGCAGCGGTGTCAGCTCCAC
CTAGCAGTGAGTCCCGGAACATGCGGCGAGGTGTACGCAAAGATAAGGCG
GAAAGACAAAGCCAACGATGGCGAGTACTGCTGTACGAAAACAGCGATCC
TCGTCTCGGGAGTCCGATTGTGTCCCCCACACAAGTAGGGAGAATGGATG
AGGGGGCCGAATTGATCTCGAATGGCGGGTTGCGAACAGCGATGAAACAC
ACCCGAAGAAGGACGAAGGCAGGTCTTCCCCTCTTTGGGTTTCAGCGGCT
GGCAGCGATTTCAGCAGAGCTCTCTCAGCGAGGAGGTGCTGCCTGGGGAG
GGAAGCGGGTAACGATTGGCGAGCCGAAAGAGGAGCAGTGGCGCTTCTTT
CGTTCGCAGGCCTGTTGAGTTCGGTGTAGCCCCGAAGATCCCTCGAATCG
TGAGAGGACGCAGTCTTTTGTCCACCGCACGCAAGTTTTTCAGCTGCTGC
TGTTGGACGGACCACGAACAAGCCTCCGCTCCTGCGGCACGGACACAGCG
ACACAGCAGTGCTGACACTTAACGCCGCAAGAACCAGCCCGATAATAAAA
CAGAGTTCTTATTGCCGAGAAATAGGCAGGGCATGCCGTAGACACTTTTC
GATCTGTTACACCCGGCAGAGTTGAGCCTTCCCGTGGGATGGCTCCGAAG
TCTTCAAGGTAATCCCTTGACGCACCACGGACAGGAGAAACACGCATGTT
GTCCAGCACCCGGGGACGAGCGATCGCAACGCCCAACGTTCGACACACGA
GACCGCTTCTGCTCCGCCACACAATGGCTGCACCAGTGAGGACCAGCGGC
ATACAGCACGAAAGCGTCTGCAGGGTGTTTGCGTCCGAGAGCGTGCGACA
AGGCACCAAGAGGCGCGAATGCTACCTCAATTCAAGAACGTGTGAAAAAG
TTGCAGGACAAGTATGAGGGGTGCCTGGAAGGCTCGCCAGGAGGCCCGCG
GGCGATGAAACAATGCGGATCATCAGCAGGGATTCTCTCTTGGAACGCAA
GATCGCCTCGTTTGAAAACAGATCCCCTAGTGGTGCTGGTAGCCGCAATG
CAACCGCCACTGCGAATGGCACCGGACGATCAGCTACGAATGTGTGCGGT
TTCAAATGTGATCTCGACCGTTAGATGTATCACGCTGCGACCTCTCGCTC
CAGAAGACATCCATATCTTCCGCTGCCGCACCCGTTGTTCTATGCCACAT
CCTGACGTCTCCTGTCGCCTGATGCTTCTCTTCACCATTTCGTCCTTTTG
CAGCTGGGAAGCAGCACATGTCTCACGTGTCGTACGCTGGTAACGGCGGC
GTCGGGAATGGTAGGGATCTCCGAGGCGGAGCCACCGACGTGAACGGTGA
ACCCATCATAGACGACGGCGGTCGACCAGTTGCGGTCGGAGGCGACGCGG
AAGGCGGCAGCGGCGGCATCGCCGGTGACGGCGGAGACAACCTGCACCGA
CAATCCGCCGCGCGCTCGGATTACAACGGTGTTTTTCCCACGGCTCCCAC
CGTTGCCCGTTTATCAGCAATCCCTACTGCTGCCAGCGCGAATTCCGTCA
GCAATTACTCCACCAGCAACAACGGTGGCGGTAGTCATGTCTGCGGTACG
ACGACGACTTCCTTGCGCGCCGTGGGGCCCGGCGGCTATTCCCAGAGGGC
AGCGGATGAAGCACTTAGAAACAATTCACTCGGACTCACCTTGTCCGACG
TGAGCGGCATGAACATGGGTATGGCGGCGGCGATGCTGGTCGGAGGGATG
AACAACGTTAACACCGCAGGCCCTGCCGACTCCATGTCAAGACGAGGCAC
GGGTGTGGTGGCATCGGAGGCGGGCGGCGTACCGCCGGTATCCATGCCAT
TCATGGGGGCCGGCGCAGGGAGTGCTGGGATGCTGGTTCAACCAGGAGCC
TTGGCCGGTGCACCTGCGGTGATGCGGGACGTTGAAGGAGGGGGCGGGCG
TGGAAGACGAGAGAAGGGTTCAAGCTTAGATTCAAATGCTGCGTCGACTA
TCGCTGCTGGAGGCGGAGGGTTGACGACACACTGGGGGGTGGGGCACGGC
ATGGATAGGACCGCTGACGGCGGTGACCTCGGCGGTGTCGATGGCAATGG
CGGGGGTACGAGTAAACGCAGGAAGATGAATACCACGGTATCCTTGCCGA
CGAGCGCCGCCGCGACCTTGCTGCCGCCGCTTCCGCCGCCGCTGCCGCTG
CCGCCGCCGCCGCCGCTACCCCCGCAGCACCACCACCACCAGCATCAGCA
CCACCACCAGCATCAGCATCAACAACACCTCCTGCTGCAGGAAGATATAA
AGAAGCCTATACCGATGCATATCAACGGCGCGATGGCGCATTCATCCCCT
GGCGGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1117:9582..13439+

>mRNA_H-canaliculatus_F_contig1117.1054.1 ID=mRNA_H-canaliculatus_F_contig1117.1054.1|Name=mRNA_H-canaliculatus_F_contig1117.1054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2670bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1117:9582..13439+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGCGAGAGAGAGGCTTCACCACCGAGTGCGAGAGAGGCAGGCAGCTTC
GGCAGGGGGAGAGGAACTTGCAGAAGAATCCAACAATCTCAAGAGAGGGG
CCGTACGACGGAAAGAGTCGGATACTCTCTCCACAGACCGCCCGAAGGGT
CAGAGTAAATCAAGACGGCCCAGGGCACGGGACGACAGCGTTACCATGGC
AACGGGTCTATCTTTTTCCTCGGCAACACCGGGGCGCGAGAGAGAGGCTT
CACCACCGAGTGCGAGAGAGGCAGGCAGCTTCGGCAGGGGGAGAGGAACT
TGCAGAAGAATCCAACAATCTCAAGAGAGGGGCCGTACGACGGAAAGAGT
CGGATACTCTCTCCACAGACCGCCCGAAGGGTCAGAGTAAATCAAGACGG
CCCAGGGCACGGGACGACAGCGTTACCATGGCAACGGGTCTATCTTTTTC
CTCGGCAACACCGGCTGGGAAGCAGCACATGTCTCACGTGTCGTACGCTG
GTAACGGCGGCGTCGGGAATGGTAGGGATCTCCGAGGCGGAGCCACCGAC
GTGAACGGTGAACCCATCATAGACGACGGCGGTCGACCAGTTGCGGTCGG
AGGCGACGCGGAAGGCGGCAGCGGCGGCATCGCCGGTGACGGCGGAGACA
ACCTGCACCGACAATCCGCCGCGCGCTCGGATTACAACGGTGTTTTTCCC
ACGGCTCCCACCGTTGCCCGTTTATCAGCAATCCCTACTGCTGCCAGCGC
GAATTCCGTCAGCAATTACTCCACCAGCAACAACGGTGGCGGTAGTCATG
TCTGCGGTACGACGACGACTTCCTTGCGCGCCGTGGGGCCCGGCGGCTAT
TCCCAGAGGGCAGCGGATGAAGCACTTAGAAACAATTCACTCGGACTCAC
CTTGTCCGACGTGAGCGGCATGAACATGGGTATGGCGGCGGCGATGCTGG
TCGGAGGGATGAACAACGTTAACACCGCAGGCCCTGCCGACTCCATGTCA
AGACGAGGCACGGGTGTGGTGGCATCGGAGGCGGGCGGCGTACCGCCGGT
ATCCATGCCATTCATGGGGGCCGGCGCAGGGAGTGCTGGGATGCTGGTTC
AACCAGGAGCCTTGGCCGGTGCACCTGCGGTGATGCGGGACGTTGAAGGA
GGGGGCGGGCGTGGAAGACGAGAGAAGGGTTCAAGCTTAGATTCAAATGC
TGCGTCGACTATCGCTGCTGGAGGCGGAGGGTTGACGACACACTGGGGGG
TGGGGCACGGCATGGATAGGACCGCTGACGGCGGTGACCTCGGCGGTGTC
GATGGCAATGGCGGGGGTACGAGTAAACGCAGGAAGATGAATACCACGGT
ATCCTTGCCGACGAGCGCCGCCGCGACCTTGCTGCCGCCGCTTCCGCCGC
CGCTGCCGCTGCCGCCGCCGCCGCCGCTACCCCCGCAGCACCACCACCAC
CAGCATCAGCACCACCACCAGCATCAGCATCAACAACACCTCCTGCTGCA
GGAAGATATAAAGAAGCCTATACCGATGCATATCAACGGCGCGATGGCGC
ATTCATCCCCTGGCGGCCTGGGAAGCAGCACATGTCTCACGTGTCGTACG
CTGGTAACGGCGGCGTCGGGAATGGTAGGGATCTCCGAGGCGGAGCCACC
GACGTGAACGGTGAACCCATCATAGACGACGGCGGTCGACCAGTTGCGGT
CGGAGGCGACGCGGAAGGCGGCAGCGGCGGCATCGCCGGTGACGGCGGAG
ACAACCTGCACCGACAATCCGCCGCGCGCTCGGATTACAACGGTGTTTTT
CCCACGGCTCCCACCGTTGCCCGTTTATCAGCAATCCCTACTGCTGCCAG
CGCGAATTCCGTCAGCAATTACTCCACCAGCAACAACGGTGGCGGTAGTC
ATGTCTGCGGTACGACGACGACTTCCTTGCGCGCCGTGGGGCCCGGCGGC
TATTCCCAGAGGGCAGCGGATGAAGCACTTAGAAACAATTCACTCGGACT
CACCTTGTCCGACGTGAGCGGCATGAACATGGGTATGGCGGCGGCGATGC
TGGTCGGAGGGATGAACAACGTTAACACCGCAGGCCCTGCCGACTCCATG
TCAAGACGAGGCACGGGTGTGGTGGCATCGGAGGCGGGCGGCGTACCGCC
GGTATCCATGCCATTCATGGGGGCCGGCGCAGGGAGTGCTGGGATGCTGG
TTCAACCAGGAGCCTTGGCCGGTGCACCTGCGGTGATGCGGGACGTTGAA
GGAGGGGGCGGGCGTGGAAGACGAGAGAAGGGTTCAAGCTTAGATTCAAA
TGCTGCGTCGACTATCGCTGCTGGAGGCGGAGGGTTGACGACACACTGGG
GGGTGGGGCACGGCATGGATAGGACCGCTGACGGCGGTGACCTCGGCGGT
GTCGATGGCAATGGCGGGGGTACGAGTAAACGCAGGAAGATGAATACCAC
GGTATCCTTGCCGACGAGCGCCGCCGCGACCTTGCTGCCGCCGCTTCCGC
CGCCGCTGCCGCTGCCGCCGCCGCCGCCGCTACCCCCGCAGCACCACCAC
CACCAGCATCAGCACCACCACCAGCATCAGCATCAACAACACCTCCTGCT
GCAGGAAGATATAAAGAAGCCTATACCGATGCATATCAACGGCGCGATGG
CGCATTCATCCCCTGGCGGC
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