mRNA_H-canaliculatus_F_contig1116.1044.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1116.1044.1
Unique NamemRNA_H-canaliculatus_F_contig1116.1044.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A6H5JM32_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM32_9PHAE)

HSP 1 Score: 569 bits (1467), Expect = 1.260e-191
Identity = 277/320 (86.56%), Postives = 297/320 (92.81%), Query Frame = 1
Query:  919 GTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIPSKMAS----NNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFGGSGGHYNANEDRRQGQR 1866
            G G  GE GVS QGL AWV+ERAPLLHHCLSTF+HTRCFLYGD R LGVEALPSCAAS+P SLAVF+PPRPQ+PS+LLD+H+AEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRER SGAVWGGCADSPWKESNSFYGGEASFL RL+PDFK+IP KMA     N NFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDD CVGRSACLTFE GELCP QSR FEVDI+EVWGVGGE+A+GEALEAR+KQR+YTAAQIH+ARQVDKSKFATNAFDKEFLLGKTFGG+GGHYN N+DRR+G+R
Sbjct:    9 GGGGNGEGGVSPQGLTAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVEALPSCAASLPPSLAVFSPPRPQQPSFLLDSHRAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERESGAVWGGCADSPWKESNSFYGGEASFLFRLAPDFKIIPHKMARRVQRNQNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDKCVGRSACLTFEQGELCPEQSRRFEVDILEVWGVGGEKAVGEALEARDKQREYTAAQIHKARQVDKSKFATNAFDKEFLLGKTFGGNGGHYNPNKDRRKGER 328          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: D7FR85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR85_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.290e-116
Identity = 206/293 (70.31%), Postives = 234/293 (79.86%), Query Frame = 1
Query:  409 RSLADAGGKHIDPPKFRKHFALEGADWFSERLLAVFLEGGEEPAGSGEGKLTLEGFREGVAATGRSSRAGMVQALYNICNPTGAASLNPAELARLFEAAYCCGVAASQPPRDLTPAATDGTSGTPDGTSGGSASGTAPVEGGSSPPSSSKEGLFRSDRLAESVKSHLSSA---------GTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNR 1260
            RSLADA GKHIDP KFR+HFALEGADWFS+RLLAVFLE G+  +GS  GKL LEGFREGVA TGRSSR+GMVQALYNICNPTGA+SL+  +LARLFEAA+CC  AA +     +P  TD T+      +G +++ T+  E  S   SSS+   FRSD+LAESV +HL SA         G G  GE GVS QGLKAWV+ERAPLLHHCLSTF+HTRCFLYGD R LGVEALPSCAAS+P SLAVF+PPRPQ+PS+LLD+H+AEIFGLALSTKALQGPWMRIYNSEEDGLSFNR
Sbjct:    4 RSLADAEGKHIDPQKFREHFALEGADWFSDRLLAVFLEEGKVRSGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNPTGASSLDQQQLARLFEAAHCCCTAAWR----RSPTTTDDTA------TGTASTSTSIPEVASG--SSSENSQFRSDKLAESVANHLGSARMGVSRIGPGGGGDGEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVEALPSCAASLPPSLAVFSPPRPQQPSFLLDSHRAEIFGLALSTKALQGPWMRIYNSEEDGLSFNR 284          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A835YL28_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL28_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.040e-86
Identity = 195/551 (35.39%), Postives = 266/551 (48.28%), Query Frame = 1
Query:  415 LADAGGKHIDPPKFRKHFALEGADWFSERLLAVFLEGGE-----EPAGSGEGKLTLEGFREGVAATGRSSRAGMVQALYNICN----------------------------PTGAASLNPAELARLFEAAYCCGVAASQPPRDLTPAATDGTSGTPDGTSGGSASGTAPVEGGSSPPSSSKEGLFRSDRLAESVKSHLSSAGTGAIGEEG--------------VSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIPSKMASNNNFQYLNLK------------------------GFSLPHGFGMGGSTEAFRFFIPEALD-DTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFGGSGGHYNANEDR 1851
            L + GG  ++P  F     L    WF+++L AV+  GGE          G   L+L  F EG+A T R  RA  +  L+N                               P G   L+   LAR+F   +  G AA   P +L                                        F++ R+A ++ +H++S         G              ++      W AE AP LHH L T+M  RCF   DD+             +P S   F  PR  +PS +L     E+ GLA+     QGPW+R++ S+EDGLSFNR+   ++GYGGP+++++R+R SGAV GG A   W+E N+FYGG  SFL +LSP F+V  SK AS  N+ YLNLK                        GFSLPHG GMGG+ + FRFFIPE+ D +  V +S C+TFE GELCP+ +R FE+D +EVWG+GGEEA+   L+AR + R   A  +++AR+VDK+KF  N FD+EFLLGKTF G        E+R
Sbjct:   24 LTEEGGA-VNPEAFAAFVGLPELPWFAQQLAAVYATGGEGAEVSHSVAEGGVTLSLAAFGEGIANTCRGKRASALHILFNASRAQQGTEGERSPSSDPPLREGGDGVEGRLPEGV--LDKRGLARVFTLTHAAGRAAWGHPVELA--------------------------------------QFKASRMAAALLAHIASMNASDAVLSGXXXXXXXXXXXXXXITFDQFAQWAAEEAPFLHHALGTYMQRRCF--PDDK-------------LPPSAPKFETPRLLQPSSVLSGLGPELLGLAIGRVMAQGPWVRLFTSDEDGLSFNRLCHSIMGYGGPSLLVLRDRVSGAVLGGVASDTWRELNTFYGGSESFLFQLSPSFRVCQSKPASERNYMYLNLKTKVLYHNIIEHCTAEXXXXXXXXXGFSLPHGLGMGGTRDNFRFFIPESFDAEASVAKSNCMTFEPGELCPSANRRFEIDSLEVWGLGGEEAVSAGLDARMRHRAAVAHTLNKARKVDKAKFLDNEFDREFLLGKTFNGGXXXXXKGENR 518          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A7S3YII2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YII2_HETAK)

HSP 1 Score: 232 bits (591), Expect = 2.430e-65
Identity = 127/252 (50.40%), Postives = 163/252 (64.68%), Query Frame = 1
Query: 1108 AVFTPPRP--QEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEAS--------FLLRLSPDFKVIPSKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRN-FEVDIMEVWGVGG-----EEALGEALEAREKQRQYTAAQ-IHQARQVDKSKFATNAFDKEFLLGKTF 1812
            A F PPRP    P  +L      +  LA  +  +QGPW ++Y+S EDG SFNRV  K +GYGGPT++L+R+   GAV+GG A +PW+E N  YGG           FL RL P+F++ P+++  N NF YLNLKGFSLPHG GMGGS   FRFF+PE L+D C   + CLTFE+GEL  +  +  F++  +EVWG GG     E ALG+ LE RE     TAA+ I +AR+VDK+ F  NAFD+EFLLGKTF
Sbjct:    1 AAFAPPRPLGSSPGGILQGRARTLALLAAHSAKVQGPWAKLYDSREDGTSFNRVCHKALGYGGPTLVLVRDE-GGAVFGGLAPAPWREGNEMYGGXXXXXXXXXXXFLFRLEPEFRIYPARVGGNENFMYLNLKGFSLPHGMGMGGSIGNFRFFLPEMLED-CSTSARCLTFENGELSSSGKQGKFQILDLEVWGCGGSRAEVERALGKQLEVRE-----TAARNIEKARKVDKAAFLDNAFDREFLLGKTF 245          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A7S2SM30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM30_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.120e-55
Identity = 135/331 (40.79%), Postives = 181/331 (54.68%), Query Frame = 1
Query:  883 LAESVKSHLSSAG------TGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQ---AEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVI-PSKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSR-------NFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFGGSG 1824
            L ESV SH +  G       GA   +GV+      W A + PLLH  L T +  RCF                 + + + L +   P+  +PS +L       A +FGLA +   LQGPW R+Y S EDGLSF+R+   ++GY GP++++I E   GA++GG A S W+ESNSF G    FL R+ P F V  P       +F YLN +GF+LP G G GG  + FR F+PE+ D   V RS CLT+E+G L  + S         F +  +EVWG GG +A+  A  ++ K RQ  AA I +AR+VDK+KF  N FD+EFLLGKT G  G
Sbjct:  229 LVESVWSHAAKVGGLKQVHRGATHVQGVTFPAFADWSAIQCPLLHLSLVTLIQARCFSPWTGH-----------SGLTNGLQL---PKLDQPSAILTGKPDLCAGLFGLASAAVELQGPWARLYTSSEDGLSFSRLVHSVLGYTGPSILII-EDEEGAIFGGFAASGWRESNSFSGRPGCFLFRMRPTFSVYRPRLPRGEQHFMYLNQRGFALPRGLGFGGRLDNFRLFLPESFDGG-VCRSRCLTYEAGPLAQSNSPASMEGGLEFGIRSVEVWGCGGIDAVQAAKSSQAKTRQQKAASIEKARKVDKAKFWENTFDREFLLGKTAGAGG 543          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A662WM33_9STRA (TLDc domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WM33_9STRA)

HSP 1 Score: 205 bits (521), Expect = 8.570e-54
Identity = 129/313 (41.21%), Postives = 177/313 (56.55%), Query Frame = 1
Query:  913 SAGTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIP-SKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFGGSGGHYNANED 1848
            SAGT +  +   SS     W+  + PLL+    ++M  + F           A PS   +  SS A F P         + + ++    L+  T A+Q    R+Y S +DGLSFNR++F L+GY GPT+ +IR+   GA++G   DS WKES+ FYGG   FL RL+P+  +   +   +N N+ YLN KGF+LP G GMGGST+ FR F+ E LD+       CL+FESG L  + S  F VD MEVWG GG E  GE   +++  RQ TA  I++AR+VDK++FA + FDKEF L KTFG  G      +D
Sbjct:  152 SAGTSSSSQ--TSSDDFVRWIGAQFPLLYTIFMSWMARKSF--------ASLARPSYQNAAASSDASFLP---------VHHCRSHFVALSTVTSAVQTSLSRLYTSSQDGLSFNRLSFHLLGYSGPTLTVIRDT-GGAIFGMFCDSEWKESSRFYGGNGCFLFRLAPETSIYRVTASGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYSTPKCLSFESGRL--SSSEQFVVDAMEVWGCGGAE--GEL--SQKAHRQETADLINRARKVDKAQFAGSDFDKEFFLSKTFGHGGDRARVADD 438          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: D0N3A1_PHYIT (TLDc domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0N3A1_PHYIT)

HSP 1 Score: 203 bits (517), Expect = 3.980e-53
Identity = 125/315 (39.68%), Postives = 181/315 (57.46%), Query Frame = 1
Query:  877 DRLAESVKSHLSSAGTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIP-SKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREK-QRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFG 1815
            DR+A++ K+   +A   + G    SS     W+  + PLL+    ++M  + F          E+L       PS    +  P+    S +L   ++    L+  T +LQ P  R+Y S +DGLSFNR+++ ++GY GPT+ +IR+ + GAV+G   D+ WKES+ +YGG   FL RL+P+  +   S   +N N+ YLN KGF+LP G GMGGST+ FR F+ E LD+     + CL+FE G L  +    F +D MEVWG GGEE+     + R+K  RQ TA  I++AR+VDK++F  N FDKE  LGKTFG
Sbjct:  155 DRMADAAKALARAALPPSAGSTQASSDDFVRWIGSQFPLLYTIFMSWMARKSF----------ESLTK-----PS----YEAPQLSHTSGILS--RSHFVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQ-GAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANENYMYLNSKGFALPRGLGMGGSTDKFRLFLSEDLDENSYTTAKCLSFEPGRL--SSGEQFVIDAMEVWGCGGEES-----DLRQKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFG 440          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A3R7J8C9_9STRA (TLDc domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8C9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.620e-52
Identity = 121/314 (38.54%), Postives = 176/314 (56.05%), Query Frame = 1
Query:  877 DRLAESVKSHLSSAGTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIPSKMAS-NNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFG 1815
            DR+ +   +   +A   A G    SS     W+  + PLL+    ++M  +CF        G    PS  A           PR    S +L   ++    LA    ++Q    R+Y S +DGLSFNR+++ ++GY GPT+++IR+ + GAV+G   D+ WKES+ +YGG   FL R++P+  +     +S N N+ YLN KGF+LP G G+GGST+ FR F+ E LD+     S CL+FE G L  N+   F +D +E WG GGEE+      +++  RQ TA  I++AR+VDK++F  N FDKEFLL KTFG
Sbjct:  130 DRMMDVANALAHAAMPPAAGATQASSDDFVRWIGAQFPLLYTIFMSWMARKCF--------GSMTKPSYQA-----------PRLSNNSSILS--RSHFVALATVNSSIQTSLRRLYTSTQDGLSFNRLSYHILGYSGPTLVVIRDTQ-GAVFGMFCDTEWKESSRYYGGNGCFLFRMAPEISIYRVTASSANENYMYLNSKGFALPRGLGIGGSTDKFRLFLSEDLDENSYSTSKCLSFEPGRLSSNEK--FVIDTIEGWGCGGEESDL----SQKAHRQETADLINRARKVDKAQFLGNDFDKEFLLSKTFG 415          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A067BP30_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BP30_SAPPC)

HSP 1 Score: 193 bits (491), Expect = 7.100e-51
Identity = 112/283 (39.58%), Postives = 156/283 (55.12%), Query Frame = 1
Query:  967 AWVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIPSKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFG 1815
            +W +   PLLH   S +M  +CF                 AS+PS+ + +  PR   PS +L   + E+  L+  +  LQ  W R+Y S +DGLSFNR+ + L+GY GPT+I+      GA +G   D+PWK+ + F+GG   FL RL P+  V PS  A   NF Y N KG +LP G G+GG+T   R F  E LDD C     C TF  G L    S  F++  +E+WG GG      + +A++  R  TA  I++AR+VDK++F +N FD+E  LGKTFG
Sbjct:   78 SWTSASWPLLHTVFSAWMAHKCF-----------------ASLPSTRSTYMAPRLSHPSDILS--RGELIALSGQSMQLQDTWDRLYTSTQDGLSFNRLCYHLLGYAGPTLIVCTAM-DGATFGAYCDTPWKDQSKFFGGPGCFLYRLCPNLLVCPS--AGGTNFMYFNTKGVALPRGLGLGGTTSKCRLFFDEDLDD-CYTALKCNTFAPGSLSLRSS--FQIQTLEIWGCGG----AASRQAQKGYRADTADLINKARKVDKAQFVSNGFDREMFLGKTFG 331          
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Match: A0A0N7L627_PLAHL (Uncharacterized conserved protein, contains TLDc domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L627_PLAHL)

HSP 1 Score: 196 bits (498), Expect = 1.330e-50
Identity = 117/283 (41.34%), Postives = 168/283 (59.36%), Query Frame = 1
Query:  970 WVAERAPLLHHCLSTFMHTRCFLYGDDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALSTKALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGCADSPWKESNSFYGGEASFLLRLSPDFKVIP-SKMASNNNFQYLNLKGFSLPHGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDIMEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEFLLGKTFG 1815
            W   + PLL+   +T++  +CF          E+L       PS    +  PR    S +L   ++    L++ T +LQ    R+Y S +DGLSFNR+++ ++GY GPT+ +IR+ + GAV+G   D+ WKES+ +YGG   FL RL+PD  +   S    N N+ YLN KG++LP G GMGGST+ FR F+ E LD+     + CL+FE G L  N+  +F +D+MEVWG GG+E+       +EK R  TA  I++AR+VDK++F  N FDKE  LGKTFG
Sbjct:  187 WTELQLPLLYTVFTTWIAQKCF----------ESLTK-----PS----YEAPRLSPKSEILS--RSHFVALSMVTTSLQRTLNRLYTSTQDGLSFNRLSYHILGYSGPTLTVIRDVQ-GAVFGMFCDTEWKESSRYYGGNGCFLFRLAPDINICRVSASGINENYMYLNSKGYALPRGLGMGGSTDKFRLFLSEDLDEQSYTIAKCLSFEPGRLSFNE--HFVIDVMEVWGCGGDESEHN----QEKHRLETAELINRARKVDKAQFIDNDFDKETFLGKTFG 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1116.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM32_9PHAE1.260e-19186.56TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR85_ECTSI2.290e-11670.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL28_9STRA1.040e-8635.39TLD-domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YII2_HETAK2.430e-6550.40Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SM30_9STRA1.120e-5540.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A662WM33_9STRA8.570e-5441.21TLDc domain-containing protein (Fragment) n=2 Tax=... [more]
D0N3A1_PHYIT3.980e-5339.68TLDc domain-containing protein n=13 Tax=Phytophtho... [more]
A0A3R7J8C9_9STRA4.620e-5238.54TLDc domain-containing protein n=4 Tax=Phytophthor... [more]
A0A067BP30_SAPPC7.100e-5139.58Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A0N7L627_PLAHL1.330e-5041.34Uncharacterized conserved protein, contains TLDc d... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1116contigH-canaliculatus_F_contig1116:2329..9185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue9e-51
Seed eggNOG ortholog4792.ETI49355
Preferred nameTLDC1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0010941,GO:0016020,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0060548,GO:0065007,GO:0071944,GO:0080134,GO:0080135,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204
EggNOG free text desc.domain in TBC and LysM domain containing proteins
EggNOG OGs3Q7AE@4776,KOG2557@1,KOG2557@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTLDc domain
Ec32 orthologEc-08_004990.1
Exons8
Model size3507
Cds size1725
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1116.1044.1prot_H-canaliculatus_F_contig1116.1044.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1116 3967..9041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.8163776-UTR-H-canaliculatus_F_contig1116:2328..39661622928793.8163776-UTR-H-canaliculatus_F_contig1116:2328..3966Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1116 2329..3966 -
1696845566.7093256-UTR-H-canaliculatus_F_contig1116:2328..39661696845566.7093256-UTR-H-canaliculatus_F_contig1116:2328..3966Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1116 2329..3966 -
1622928793.976387-UTR-H-canaliculatus_F_contig1116:9041..91851622928793.976387-UTR-H-canaliculatus_F_contig1116:9041..9185Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1116 9042..9185 -
1696845566.8106403-UTR-H-canaliculatus_F_contig1116:9041..91851696845566.8106403-UTR-H-canaliculatus_F_contig1116:9041..9185Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1116 9042..9185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.868609-CDS-H-canaliculatus_F_contig1116:3966..40861622928793.868609-CDS-H-canaliculatus_F_contig1116:3966..4086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 3967..4086 -
1696845566.7204776-CDS-H-canaliculatus_F_contig1116:3966..40861696845566.7204776-CDS-H-canaliculatus_F_contig1116:3966..4086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 3967..4086 -
1622928793.8785915-CDS-H-canaliculatus_F_contig1116:4528..46271622928793.8785915-CDS-H-canaliculatus_F_contig1116:4528..4627Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 4529..4627 -
1696845566.7292898-CDS-H-canaliculatus_F_contig1116:4528..46271696845566.7292898-CDS-H-canaliculatus_F_contig1116:4528..4627Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 4529..4627 -
1622928793.8876657-CDS-H-canaliculatus_F_contig1116:5170..53721622928793.8876657-CDS-H-canaliculatus_F_contig1116:5170..5372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 5171..5372 -
1696845566.7405715-CDS-H-canaliculatus_F_contig1116:5170..53721696845566.7405715-CDS-H-canaliculatus_F_contig1116:5170..5372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 5171..5372 -
1622928793.900585-CDS-H-canaliculatus_F_contig1116:5765..59541622928793.900585-CDS-H-canaliculatus_F_contig1116:5765..5954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 5766..5954 -
1696845566.7484236-CDS-H-canaliculatus_F_contig1116:5765..59541696845566.7484236-CDS-H-canaliculatus_F_contig1116:5765..5954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 5766..5954 -
1622928793.9151824-CDS-H-canaliculatus_F_contig1116:6420..66101622928793.9151824-CDS-H-canaliculatus_F_contig1116:6420..6610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 6421..6610 -
1696845566.75652-CDS-H-canaliculatus_F_contig1116:6420..66101696845566.75652-CDS-H-canaliculatus_F_contig1116:6420..6610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 6421..6610 -
1622928793.9310431-CDS-H-canaliculatus_F_contig1116:7299..76871622928793.9310431-CDS-H-canaliculatus_F_contig1116:7299..7687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 7300..7687 -
1696845566.7650864-CDS-H-canaliculatus_F_contig1116:7299..76871696845566.7650864-CDS-H-canaliculatus_F_contig1116:7299..7687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 7300..7687 -
1622928793.9475665-CDS-H-canaliculatus_F_contig1116:8091..81861622928793.9475665-CDS-H-canaliculatus_F_contig1116:8091..8186Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 8092..8186 -
1696845566.7796042-CDS-H-canaliculatus_F_contig1116:8091..81861696845566.7796042-CDS-H-canaliculatus_F_contig1116:8091..8186Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 8092..8186 -
1622928793.9614322-CDS-H-canaliculatus_F_contig1116:8599..90411622928793.9614322-CDS-H-canaliculatus_F_contig1116:8599..9041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 8600..9041 -
1696845566.7929726-CDS-H-canaliculatus_F_contig1116:8599..90411696845566.7929726-CDS-H-canaliculatus_F_contig1116:8599..9041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1116 8600..9041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1116.1044.1

>prot_H-canaliculatus_F_contig1116.1044.1 ID=prot_H-canaliculatus_F_contig1116.1044.1|Name=mRNA_H-canaliculatus_F_contig1116.1044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=575bp
MPRRRPFQRPSTSNTREDIVAPPSTPPDNGASNVQHGQQQYLLFPSALAC
YPASETDPRRPLQHCASCRLRLLLNRHRLTYLSLTQPSRSLADAGGKHID
PPKFRKHFALEGADWFSERLLAVFLEGGEEPAGSGEGKLTLEGFREGVAA
TGRSSRAGMVQALYNICNPTGAASLNPAELARLFEAAYCCGVAASQPPRD
LTPAATDGTSGTPDGTSGGSASGTAPVEGGSSPPSSSKEGLFRSDRLAES
VKSHLSSAGTGAIGEEGVSSQGLKAWVAERAPLLHHCLSTFMHTRCFLYG
DDRGLGVEALPSCAASIPSSLAVFTPPRPQEPSYLLDNHQAEIFGLALST
KALQGPWMRIYNSEEDGLSFNRVAFKLVGYGGPTVILIRERRSGAVWGGC
ADSPWKESNSFYGGEASFLLRLSPDFKVIPSKMASNNNFQYLNLKGFSLP
HGFGMGGSTEAFRFFIPEALDDTCVGRSACLTFESGELCPNQSRNFEVDI
MEVWGVGGEEALGEALEAREKQRQYTAAQIHQARQVDKSKFATNAFDKEF
LLGKTFGGSGGHYNANEDRRQGQR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1116:2329..9185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1116.1044.1 ID=mRNA_H-canaliculatus_F_contig1116.1044.1|Name=mRNA_H-canaliculatus_F_contig1116.1044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6857bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1116:2329..9185- (Hapterophycus canaliculatus Oshoro5f female)
GTCTCAAGCGTAGCGCCATCTCCACGCACAGCTGAGTGGTGAAACAATAT CTTCGTCTCCTGCGACCTGGAGGCGACTGTTCCGATCCAGAACGACGGAA GCGTCCCCCCCAGTGGTACTTATCTGCTTCTTTTTCTGTGCTTCATGCCT CGGCGGCGGCCGTTTCAACGACCAAGCACCAGCAACACCCGCGAAGACAT TGTAGCACCTCCTTCCACACCACCCGATAACGGCGCGAGCAACGTTCAGC ATGGACAACAGCAATACCTACTGTTCCCGAGTGCCCTCGCGTGTTACCCT GCTTCCGAAACCGATCCTCGCCGCCCCCTTCAGCATTGCGCTTCTTGTAG GCTTCGCCTTTTGCTCAACCGCCATCGTCTCACATATCTTTCGCTGACAC AACCGAGCAGGAGCCTGGCAGACGCGGGAGGCAAGCATATCGACCCACCA AAATTCCGGAAACACTTCGCGCTCGAAGGCGCGGACTGGTTCTCTGAGCG ACTGCTGGCGGTGTTCCTAGAGGGAGGAGAGGAGCCGGCGGGTTCTGGGG AGGGAAAGCTCACCCTGGAAGGCTTTCGAGAAGGAGGTGCGTGTGGGTGG AGTAGTAGGTGTGCATCGGAGGGCTATCCTTGTTGTCGGGGGGGTTGCGG TAGGCAGGGGTATCCGTTTGGTGAAAGGGCGGTGGAGGAAAGACGTGAAG GAGGAAAACGGAAGCGTACGTCAACCTCTCCCTTCTTGTAATGAGCCTGC AGAGTGCTAAGTGCTTCACTCGGGCAAAATCACAGTATGTGTGTTTTGGC GGCGGCGGGTATCGCCGATAGGAAACTTGCTGCCCACCCGTCACCCTCCC CTGCTCCGACACCGGTATCTTTCAGACTCTTCTAGACTCCCGACGTTTCA CGCCCGACTGCTATCGACGCGTCTTTTGCTGTGCACGATTGATACGCCTT CACGATGGCCAAACGACACCGACGATGACACCAACACGCGATGCCACAGT GGCGGCGACTGGACGAAGTAGCCGAGCAGGGATGGTCCAGGCGCTGTATA ACATCTGCAATCCGACCGGGGCCGCGTCCTTGAACCCGGCTGAGGTGCGT TGTCGGAGCAAGGCAAAGAAAACCACCTGCCAAGAAGATGTGCTGCAGCT CTGCTGTCTAGTATCCTCCGCCTTCGTTGTGTGACCGAGGTACCGCTGGG ATGAGCGACACATAAGAGGGGGTGAAGGGTGGCAGGTTCGCGAGGGGGTG AATTCGGGACATCCCACAGAGCAGCATGTCCGTCGTGGGCTGTCAAGCTC GAGTAAAGGCGCAGCTGGATGTGACGGACGTAGAAAAGTTCGTGGGGGCG GCGGCGGCGGTTATGGTGGCACTAGAACCCCTTGACCCTCCACGTACTAC GCCCTGACCCTGGTTCTCTACCCCTCCTCACGTCCACCCCTCTGCCTTCG TCGTTACTCTCTCTCTCGCTCCTGCTTGTGCACCCCGTAACCCCCCAGCT CGCACGACTATTCGAGGCGGCGTACTGCTGCGGCGTCGCGGCGTCGCAAC CGCCCCGCGACCTCACCCCCGCCGCCACAGACGGCACCAGCGGAACTCCC GATGGCACGAGCGGCGGCAGCGCTAGCGGCACCGCTCCGGTGGAGGGAGG GTCCTCACCGCCCTCCTCGTCGAAAGAGGGCCTGTTTCGCTCCGACAGGC TGGCCGAGAGCGTGAAGAGTCACCTCAGCTCGGCGGGAACCGGAGCGATC GGAGAGGAGGGCGTCTCCTCTCAGGGGTTGAAGGCGTGGGTGGCGGAGAG GGCTCCGCTGCTGCACCACTGCCTGAGCACCTTCATGCACACCAGGTGCT TTTTGTACGGGGACGACAGAGGCCTGGGAGTCGAAGGTAAGCGAGGTGGC CGGTGTCTCGGACGGGGCGGGGCGGGGTGGGGTGGGGAAGATCCAGACGT GTGGCGCTTCGCGTACGGGCTTTGCCGTTTATGTCCCAAAGTCTTAGATA ACAATCGGGAGAGGGTAGAGAAGGGAGGGCAGGGGCAAGTGGGGGGTTTT CTTTTTTCTCTGTCGGTGTGCTTCTGATTTGACGGGTCTGTTGAGCCTTG CGGAGCCGCCCGGAAAAGGGTGCAGGTATTGCCGGCTCGTCTCGTGTTCG GTGCTCTATTTGGTGTGCGTCTTTCCGTCCATGCTTTTGCCCTGCCTGCC CTCTACGCTTGCGCTTGCCAGGAACGCCACCAACCATCTCAATTCGTGAG GTGCTTGCTCGCAGAGCGCAAGCGCAATGCCGGCACGAAACCACTCCCTT CGGCCTGACTCGGCAACGCGCGGCCCGGAGCTCACCGGGTCAATCCGACA GCAGCAGCATCAGCGACAAGAGCAACGACTCGACACCCTGGACTCAGCCA GAACCACGGCGAAATAGCAGGCGTGACCCGGGTAGCTCCGAAAGAAACCC ACCAACAACTTAGACATCTTCAATAGCAACAAGAGCAACCCGCCGCTTTT CCTGCAAAACATGGCAACGGTATGCCACGACTGACTGACGCACGTGCGTA CGCTCGTCGCTCGCCGCACACGCAGCCCTGCCGTCGTGCGCGGCCAGCAT CCCATCGTCGCTGGCTGTGTTCACGCCTCCCCGGCCTCAGGAGCCGTCCT ACCTCCTGGACAACCACCAGGCCGAGATCTTCGGGCTGGCGCTGTCGACC AAGGCTCTCCAGGGGCCCTGGATGAGGATCTACAATAGCGAGGAGGACGG GCTGTCATTCAATAGGTGTGTATGTGTTTGCATAAATATGTGAGGTGTGA AGTATCGTCGTCGACGTTTTGAAGTGAGAAGGAGGCGTGGTCTTACGGAG GCGGGGGGGGGGTCACGGGCGTCGAGTTGGTATGGGTGCGTGGATGTGCC TGCACGCGTAGTTCTTGCGTCACGCTTTTCACGTTTCTCACTGGACAAGG GTGGTGGGTGTACCGGCGTACCAAGACTCGTCTTCGGAAAGCAGACATCG TTGGATCCTTGACTGATCATTCTATCCCTGGGCGCAAAATATCCCGCGCC CCTTCGGTACTCCCCCAAGGTGGCTTGCCTTTTCTCTGCGCATGTAGCCC GCGGGCAACAGTTCGTATCCATCGGGCTCAGGGGAGCTCTCGCCGACGGC ACTCTTGGGTCCAACGTTTCATAGCAGGCCATCAACTCAGCCTCTCTTGT TGTCAACGCCTGCTGCGTGCGACCCCCTCAGGGTTGCGTTTAAGCTGGTC GGGTACGGGGGTCCCACGGTAATTTTGATTCGAGAGAGAAGATCTGGCGC CGTCTGGGGCGGCTGCGCCGACTCCCCCTGGAAGGAGAGCAACTCGTTCT ACGGCGGGGAGGCGTCTTTCCTGCTGAGATTATCGCCAGATTTCAAGGTT ATTCCATCGAAGATGGCCAGGTACGTCTGTTGACGTTGTTGTCGTTGCTG GTGTTGTTGCTAGAGTGTTCCAGGCATCAAGGCCGAACTAAGCGTTGCCA ACTAAATGATCTTTTGGTCCGTAAGCTGACAAGTGCAGTCAAGGAAAAAT ATCGCACTCAATAGGAAGCAAGCCTTCAGCGATAGCGCGCGATACAGTCC GTAGAACGAGAACTTCGAAGAGCAGATTATTTCCCCTCGAGCCGGCAACT ACATCGGACTGTTAGTGGTGTGTTCAGGTTAGAATCGCCATGTATTTAAC CCCGCGCGACATCTTTTACAGCTTCCTATCACACTTCCACATATACGTAC CGTCAAAACGTCAATACCCCAACTGTCCGTACCACCCTCCCCGAATCCAT CCCCCGCCAACAGCAACAACAATTTCCAGTACCTAAACCTCAAGGGCTTC AGCCTGCCGCACGGGTTCGGCATGGGCGGTTCCACGGAAGCATTCCGTTT TTTCATCCCAGAGGCGCTGGACGACACCTGTGTCGGCAGGAGCGCGTGCC TGACCTTTGAGTCGGGCGAGCTTTGCCCCAACCAGTCTCGGAATTTCGAA GTGGACATAATGGAGGTGCGTACTTTTTGCGCTTCCGTCGTCCTGCGGTA GCGTTTTTTTTTAATATCATGTTACGCGCTTTGCTTCCATAGCGATGCAC ATCCAACGGGGGGGCCCTGGTAGTTGCAACCATTTTTCGAGATCGGACAG AGGTTTCGATGATGGGCTGTGTGTACAACGCGCTTCGGAATTGCACTCGT ACGCAGGTGAGCCCTCCCTCGCACATAATTCCGAACCCACCCCAGCTTAG TCGACACAAGTGCGGCTTTGCACCTTGGAACTTACGAAGCAACCAAACGT TGGTTCATAACCGCCCGTAGCGCAACGTGTTCGTACACGCGTTTAATGTG CCGAGAGCTTTTGCCGTCTTCTGGTTTCATCAGAAGCGCCCTTTGCTCGT CCGGAGCGGCGCGTTCTGCCTGCCGAACACCTCCCTGGTCTTTCCTTCGT CCGTGGCAGCCCTTGCGCAATCTCCGCTCCATGGCAGCCCTTGCGCAATC TCCGCGCGATTCGTCGGCGTTGTGTTGAACAGAGATCGCTTTCGTATTGG CCTCGCAGGTGTGGGGTGTGGGCGGCGAGGAGGCGCTGGGGGAGGCGCTT GAGGCCAGGGAGAAACAGAGGCAATACACTGCGGCACAAATCCACCAGGC CAGACAGGTGCGGCGACGGTAGGAGCGCGTCCGTGGCGGTGTTGTTGCCG TTTTTCGTGGTCGAAGTGAAAGTCGTGCATGCGTTGGTGTGTGTAAATCA TCCCTCTCTTCTTCCCGTGTCGCCAAGTGTTGCCGCCATCGCTGCTGTCG ACTGCTGCTTCGCTGTTTACGTTGAGCTGTGCGTTCCGACAACCTGCCTG CCGTCGATAAGTTGGCGAGTGAGACAAGGAGATTCCGATATTCTTGCTCG AGCTGCTCATGTGAGCAGTATGTACAACCATTCCGAGTGAAGGGCAAGGG ACACAAGGGGAACGGTCTATCACTATACACCATATTAAAGGCGCGGCTGC ATCGTGCCATGCTGCATCGGGAGATCTGGACCACCGTCAACTCCTAACTC TCTCTCCTTGGGTCCATTCGATTCCATTTTCCCGTACCATTCGTCTCAGG TCGACAAGTCGAAGTTCGCCACTAATGCCTTCGACAAGGAGTTCCTCCTC GGCAAGACTTTCGGCGGGAGCGGGGGGCATTACAACGCCAATGAAGACCG GCGTCAGGGACAGCGCTGAGATCGCTCCCTTCCTGGCTCGGGCGATCCTT CATGTCGGCATTCTTGAATTTTACTGCGCTCCGTCCTCAACCTCCTTCCA CCTGCACCATGCTGGCCTTTTTTCAAAAAATATTTGTATACCCCCCCCGC GCCCCCCCCATCGTTATCGGACGTATACCCCTCAATTTGAATCGTACGTC TGTTCTCTTGCAATTTTGCGCACGGTAATGCACGGGGTTCCGATCGTTTT GTGGCGACAGCATAGTGGTTTATGATTTTTTTTTTCGCAAAAACAGTTGG GGTGGTTTGACGGGCGCAGGTTGAGGTAAAGAGAAGTAGTGAGGGAAGGC GGTGGGAATGCCAACGATAAGTGATCGGGCACAAGATGAAACCGCTTCGC TTCATAGCTATGGTGGACCCGTAACCACTTGATTGTGCCGCAACCGAGCG TTGGAACCATTTTGCCTGGCGTGTTTTCGACACGTGTTTGTTTCAACGGA AACTCTTCCAATACGCTACTGCAGACCCTATGGTTCACGCCGGGACGATA CCTGCTCGTGGCGGCGGTGGTGGGGAGCTGGTGTTCTCTTTCAACTTGTT GAAGAGTTGTGGGTCCGTTGCTGTCTTCACATCTCGTTGAAAGGTCACTC TGTTTTCTGCTCGCAGCAGTAGTGGTACCTCCCGACGCCGGTAATCTTCG AAGGTCCAGGAAGCGCTTCCCGTGATCACAGGCAAGATGTTAGCTGCACC CGAAAAAGGGTGTACCCTGCTTCAGGGGAAAAGATACAGCGGTAAATTAA GTGAAGCGAAAAAAAAGTAGACCCAGATACGAAGTCAAGCGAACTATCAT GAAGCAACGACAGGACAGCCAGCACGAGAAGCAAGAATGAAAAAAGCGGT TGGATAATCAGAGAACGAATACCCTACCCGAGACGGGATGCTTTGAATTT CCTTTGAAGCGGGGATCAGGTGAGGCTGGTCGGAACATGATCATCGCGTC ACGTGATTTGGTATAATGCGTGTCGGTGCGTATCGACGTCGGCAGGCAGT AGAAAGCGTGTCACAAATTTCCGGGTCACAAGTTTCCTTCTTTAGCGGAT CAAAAATCTACCCAACCAGCGGTTCACGCCGGGCGGAGACGTTGAGGTGC ACATTCCCCCCTTTAATTTTTTTTTCTTCTGGTATCAAGTGTACAAGACA TGTGCTCAATCAACAAAACGTAGACCTAAACGTCCTCCGTACCAACATGT CTCGAGGGACCGGCTCTTTCACCTTGGTCGACGTTTTGCCAAGAACGACC TTTTCTGCAAAAATGCCTTTGGAACAAATGCTTTACTTGTGGAGGGGGTT GACTGCGATAATCCAAGGTTGTACGATTTTGGAAGATTAGTGAGTAGAGA GAGGAAGACATGCATCTAGAAATCAAGCCATCCTTGCTACTAACTGTACT GGATCGTGCATTTTGACAGAGAGAGAGGAACCGCAAACTCCGGAATCTAC CTCTCGCAACGAGTGCTCCCCTACCCACCACTTGTTCGCGGAAGTAGTCA GAAGTTTTCATTTCCGTTGTTAGGGGTAGATCGAACTTCGTGGGGAACAA GAAGGCGTTCTCTACCTAACTCACTCCCTCTGAGGTATTATTAGTGCGAC AAGTCCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1116:2329..9185-

>mRNA_H-canaliculatus_F_contig1116.1044.1 ID=mRNA_H-canaliculatus_F_contig1116.1044.1|Name=mRNA_H-canaliculatus_F_contig1116.1044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1116:2329..9185- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCGGCGGCGGCCGTTTCAACGACCAAGCACCAGCAACACCCGCGA
AGACATTGTAGCACCTCCTTCCACACCACCCGATAACGGCGCGAGCAACG
TTCAGCATGGACAACAGCAATACCTACTGTTCCCGAGTGCCCTCGCGTGT
TACCCTGCTTCCGAAACCGATCCTCGCCGCCCCCTTCAGCATTGCGCTTC
TTGTAGGCTTCGCCTTTTGCTCAACCGCCATCGTCTCACATATCTTTCGC
TGACACAACCGAGCAGGAGCCTGGCAGACGCGGGAGGCAAGCATATCGAC
CCACCAAAATTCCGGAAACACTTCGCGCTCGAAGGCGCGGACTGGTTCTC
TGAGCGACTGCTGGCGGTGTTCCTAGAGGGAGGAGAGGAGCCGGCGGGTT
CTGGGGAGGGAAAGCTCACCCTGGAAGGCTTTCGAGAAGGAGATGCCTCG
GCGGCGGCCGTTTCAACGACCAAGCACCAGCAACACCCGCGAAGACATTG
TAGCACCTCCTTCCACACCACCCGATAACGGCGCGAGCAACGTTCAGCAT
GGACAACAGCAATACCTACTGTTCCCGAGTGCCCTCGCGTGTTACCCTGC
TTCCGAAACCGATCCTCGCCGCCCCCTTCAGCATTGCGCTTCTTGTAGGC
TTCGCCTTTTGCTCAACCGCCATCGTCTCACATATCTTTCGCTGACACAA
CCGAGCAGGAGCCTGGCAGACGCGGGAGGCAAGCATATCGACCCACCAAA
ATTCCGGAAACACTTCGCGCTCGAAGGCGCGGACTGGTTCTCTGAGCGAC
TGCTGGCGGTGTTCCTAGAGGGAGGAGAGGAGCCGGCGGGTTCTGGGGAG
GGAAAGCTCACCCTGGAAGGCTTTCGAGAAGGAGTGGCGGCGACTGGACG
AAGTAGCCGAGCAGGGATGGTCCAGGCGCTGTATAACATCTGCAATCCGA
CCGGGGCCGCGTCCTTGAACCCGGCTGAGTGGCGGCGACTGGACGAAGTA
GCCGAGCAGGGATGGTCCAGGCGCTGTATAACATCTGCAATCCGACCGGG
GCCGCGTCCTTGAACCCGGCTGAGCTCGCACGACTATTCGAGGCGGCGTA
CTGCTGCGGCGTCGCGGCGTCGCAACCGCCCCGCGACCTCACCCCCGCCG
CCACAGACGGCACCAGCGGAACTCCCGATGGCACGAGCGGCGGCAGCGCT
AGCGGCACCGCTCCGGTGGAGGGAGGGTCCTCACCGCCCTCCTCGTCGAA
AGAGGGCCTGTTTCGCTCCGACAGGCTGGCCGAGAGCGTGAAGAGTCACC
TCAGCTCGGCGGGAACCGGAGCGATCGGAGAGGAGGGCGTCTCCTCTCAG
GGGTTGAAGGCGTGGGTGGCGGAGAGGGCTCCGCTGCTGCACCACTGCCT
GAGCACCTTCATGCACACCAGGTGCTTTTTGTACGGGGACGACAGAGGCC
TGGGAGTCGAAGCTCGCACGACTATTCGAGGCGGCGTACTGCTGCGGCGT
CGCGGCGTCGCAACCGCCCCGCGACCTCACCCCCGCCGCCACAGACGGCA
CCAGCGGAACTCCCGATGGCACGAGCGGCGGCAGCGCTAGCGGCACCGCT
CCGGTGGAGGGAGGGTCCTCACCGCCCTCCTCGTCGAAAGAGGGCCTGTT
TCGCTCCGACAGGCTGGCCGAGAGCGTGAAGAGTCACCTCAGCTCGGCGG
GAACCGGAGCGATCGGAGAGGAGGGCGTCTCCTCTCAGGGGTTGAAGGCG
TGGGTGGCGGAGAGGGCTCCGCTGCTGCACCACTGCCTGAGCACCTTCAT
GCACACCAGGTGCTTTTTGTACGGGGACGACAGAGGCCTGGGAGTCGAAG
CCCTGCCGTCGTGCGCGGCCAGCATCCCATCGTCGCTGGCTGTGTTCACG
CCTCCCCGGCCTCAGGAGCCGTCCTACCTCCTGGACAACCACCAGGCCGA
GATCTTCGGGCTGGCGCTGTCGACCAAGGCTCTCCAGGGGCCCTGGATGA
GGATCTACAATAGCGAGGAGGACGGGCTGTCATTCAATAGCCCTGCCGTC
GTGCGCGGCCAGCATCCCATCGTCGCTGGCTGTGTTCACGCCTCCCCGGC
CTCAGGAGCCGTCCTACCTCCTGGACAACCACCAGGCCGAGATCTTCGGG
CTGGCGCTGTCGACCAAGGCTCTCCAGGGGCCCTGGATGAGGATCTACAA
TAGCGAGGAGGACGGGCTGTCATTCAATAGGGTTGCGTTTAAGCTGGTCG
GGTACGGGGGTCCCACGGTAATTTTGATTCGAGAGAGAAGATCTGGCGCC
GTCTGGGGCGGCTGCGCCGACTCCCCCTGGAAGGAGAGCAACTCGTTCTA
CGGCGGGGAGGCGTCTTTCCTGCTGAGATTATCGCCAGATTTCAAGGTTA
TTCCATCGAAGATGGCCAGGGTTGCGTTTAAGCTGGTCGGGTACGGGGGT
CCCACGGTAATTTTGATTCGAGAGAGAAGATCTGGCGCCGTCTGGGGCGG
CTGCGCCGACTCCCCCTGGAAGGAGAGCAACTCGTTCTACGGCGGGGAGG
CGTCTTTCCTGCTGAGATTATCGCCAGATTTCAAGGTTATTCCATCGAAG
ATGGCCAGCAACAACAATTTCCAGTACCTAAACCTCAAGGGCTTCAGCCT
GCCGCACGGGTTCGGCATGGGCGGTTCCACGGAAGCATTCCGTTTTTTCA
TCCCAGAGGCGCTGGACGACACCTGTGTCGGCAGGAGCGCGTGCCTGACC
TTTGAGTCGGGCGAGCTTTGCCCCAACCAGTCTCGGAATTTCGAAGTGGA
CATAATGGAGCAACAACAATTTCCAGTACCTAAACCTCAAGGGCTTCAGC
CTGCCGCACGGGTTCGGCATGGGCGGTTCCACGGAAGCATTCCGTTTTTT
CATCCCAGAGGCGCTGGACGACACCTGTGTCGGCAGGAGCGCGTGCCTGA
CCTTTGAGTCGGGCGAGCTTTGCCCCAACCAGTCTCGGAATTTCGAAGTG
GACATAATGGAGGTGTGGGGTGTGGGCGGCGAGGAGGCGCTGGGGGAGGC
GCTTGAGGCCAGGGAGAAACAGAGGCAATACACTGCGGCACAAATCCACC
AGGCCAGACAGGTGTGGGGTGTGGGCGGCGAGGAGGCGCTGGGGGAGGCG
CTTGAGGCCAGGGAGAAACAGAGGCAATACACTGCGGCACAAATCCACCA
GGCCAGACAGGTCGACAAGTCGAAGTTCGCCACTAATGCCTTCGACAAGG
AGTTCCTCCTCGGCAAGACTTTCGGCGGGAGCGGGGGGCATTACAACGCC
AATGAAGACCGGCGTCAGGGACAGCGCTGAGTCGACAAGTCGAAGTTCGC
CACTAATGCCTTCGACAAGGAGTTCCTCCTCGGCAAGACTTTCGGCGGGA
GCGGGGGGCATTACAACGCCAATGAAGACCGGCGTCAGGGACAGCGCTGA
back to top