mRNA_H-canaliculatus_F_contig11134.1029.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11134.1029.1
Unique NamemRNA_H-canaliculatus_F_contig11134.1029.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A6H5K078_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K078_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.520e-51
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPGNGGVGAV 294
            QLWGVDVNTMAKKQLV PPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ GNVYVQDGIDSS+LRIVYDKAAP NGGVGAV
Sbjct:  135 QLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ-GNVYVQDGIDSSTLRIVYDKAAPDNGGVGAV 231          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A7S3YEV8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEV8_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 6.230e-24
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSAN--IRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPGNGGV 285
            QLWGVD+ T+ KKQL +PPNDGDTEENLSLEEKLRRERQRL A GVT++ W+     +    ++VPL+ GNVY+Q   D+   R++YDK + G G +
Sbjct:   66 QLWGVDLETLEKKQLFSPPNDGDTEENLSLEEKLRRERQRLMAVGVTAYAWAPACGPHGGPAVVVPLR-GNVYLQAQGDTEP-RLIYDKESLGIGAI 160          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: I2CS87_NANGC (Dipeptidyl peptidase iv (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS87_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-18
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 QLWGVDV---NTMAKKQLVTPP-NDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDK--AAPGNGGVGAV 294
            QLW VD+   +++  +Q++ PP N GDTEENLSL+EKLRRERQR +A G+T++ W        +I+VPLQ G++YVQDGI+   LR VYD    +PG GG G V
Sbjct:   36 QLWVVDIREGSSLQPRQVLAPPSNGGDTEENLSLDEKLRRERQRAYAVGITTYAWG----VGEKILVPLQ-GSLYVQDGIEGP-LRRVYDAHGGSPG-GGTGEV 132          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A4D9CWA1_9STRA (Peptidase_S9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.680e-17
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 QLWGVDV---NTMAKKQLVTPP-NDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQG----NVYVQDGIDSSSLRIVYDK--AAPGNGGVGAV 294
            QLW VD+   +++  +Q++ PP N GDTEENLSL+EKLRRERQR +A G+T++ W     A  +I+VPLQ G    ++YVQDGI+   LR VYD    +PG GG G V
Sbjct:   36 QLWVVDIREGSSLQPRQVLAPPSNGGDTEENLSLDEKLRRERQRAYAVGITTYAWG----AGKKILVPLQVGKEGGSLYVQDGIEGP-LRRVYDAHGGSPG-GGAGEV 137          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A356KCX9_9BACT (S9 family peptidase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KCX9_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 4.210e-17
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYD 258
            +LWG D+ +  ++++V+PP  GDTEENLSLEEKLRRER RL A G+T + W+ +G    R++VP+  G V+VQDG D+  LR V +
Sbjct:   46 ELWGYDLASGERRRVVSPPGAGDTEENLSLEEKLRRERLRLRALGITRYAWAKQGQ---RLIVPIS-GGVHVQDGPDAE-LRCVVE 126          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A2G6GKJ7_9CHLR (Peptidase S9 n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2G6GKJ7_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 3.550e-15
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRI 249
            QL+ +++      QLV PP DGDTEENLSLEEKLRRER R H TG+T + WS  G    RI++PL  G ++VQ+  DS   +I
Sbjct:   46 QLYALNLENGDTHQLVKPPGDGDTEENLSLEEKLRRERMRQHKTGITQYSWSKDG----RILIPLP-GGLFVQNSCDSELQQI 123          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A067CFU7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFU7_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 3.570e-15
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPG 273
            QL+G+D+ ++A   +  PP  G+TE NLSLEEKLRRERQR   TG+TSF W     +  RI+ PLQ GN+Y+Q+    + L +++DKA+ G
Sbjct:   46 QLYGLDMGSLAVSLVARPPGSGNTESNLSLEEKLRRERQRQMGTGITSFLWCPTPHST-RIVYPLQ-GNLYLQER-PGAELVLLFDKASTG 133          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A1W0A7J1_9STRA (Dipeptidyl peptidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7J1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.240e-14
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPG 273
            QL+G+D+ T     +  PP  G+TE NLSLEEKLRRERQR   TG+TSF W     +  RI+ PLQ GN+Y+Q+    + L +++DK++ G
Sbjct:   46 QLYGLDMTTYQVALVARPPGSGNTESNLSLEEKLRRERQRQMGTGITSFLWCPAPHST-RIIYPLQ-GNLYLQE-CPGAELTLLFDKSSTG 133          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A5D6Y199_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y199_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.240e-14
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPG 273
            QL+ +DV     + L +PPN GDTE NLSLEEKLRRERQR    G+TS+ W     +  RI+ P+Q G++Y+Q+    + LR+++DK   G
Sbjct:   47 QLYALDVRARTTQLLASPPNQGDTERNLSLEEKLRRERQRQMGVGITSYAWCPAPHST-RILYPIQ-GDLYIQEQ-PGAELRLLFDKTTTG 134          
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Match: A0A485LEK3_9STRA (Aste57867_20195 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEK3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.300e-14
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 QLWGVDVNTMAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPG 273
            QL+GV+V+T     +  PP  G+TE NLSLEEKLRRERQR    G+TS+ W     +  RI+ PLQ GN+Y+Q+    + L +++DKA+ G
Sbjct:   47 QLYGVNVDTHQVALVARPPGSGNTENNLSLEEKLRRERQRQMGVGITSYLWCPTPQST-RILYPLQ-GNLYLQEH-PGAELTLLFDKASTG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11134.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K078_9PHAE1.520e-5195.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3YEV8_HETAK6.230e-2456.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I2CS87_NANGC1.070e-1851.92Dipeptidyl peptidase iv (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9CWA1_9STRA2.680e-1750.93Peptidase_S9 domain-containing protein n=1 Tax=Nan... [more]
A0A356KCX9_9BACT4.210e-1751.16S9 family peptidase (Fragment) n=1 Tax=Planctomyce... [more]
A0A2G6GKJ7_9CHLR3.550e-1551.81Peptidase S9 n=2 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A067CFU7_SAPPC3.570e-1548.35Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1W0A7J1_9STRA1.240e-1447.25Dipeptidyl peptidase n=1 Tax=Thraustotheca clavata... [more]
A0A5D6Y199_9STRA1.240e-1446.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485LEK3_9STRA4.300e-1447.25Aste57867_20195 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11134contigH-canaliculatus_F_contig11134:3477..4306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.3e-37
Seed eggNOG ortholog2880.D7FUX6
KEGG koko:K01278
KEGG Pathwayko04974,map04974
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG1506@1,KOG2281@2759
EC3.4.14.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11134.1029.1prot_H-canaliculatus_F_contig11134.1029.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11134 3477..4279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.9727886-CDS-H-canaliculatus_F_contig11134:3476..35721622928791.9727886-CDS-H-canaliculatus_F_contig11134:3476..3572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11134 3477..3572 -
1696845566.016584-CDS-H-canaliculatus_F_contig11134:3476..35721696845566.016584-CDS-H-canaliculatus_F_contig11134:3476..3572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11134 3477..3572 -
1622928791.987749-CDS-H-canaliculatus_F_contig11134:4108..42791622928791.987749-CDS-H-canaliculatus_F_contig11134:4108..4279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11134 4109..4279 -
1696845566.026638-CDS-H-canaliculatus_F_contig11134:4108..42791696845566.026638-CDS-H-canaliculatus_F_contig11134:4108..4279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11134 4109..4279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.9997888-UTR-H-canaliculatus_F_contig11134:4279..43061622928791.9997888-UTR-H-canaliculatus_F_contig11134:4279..4306Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11134 4280..4306 -
1696845566.0345495-UTR-H-canaliculatus_F_contig11134:4279..43061696845566.0345495-UTR-H-canaliculatus_F_contig11134:4279..4306Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11134 4280..4306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11134.1029.1

>prot_H-canaliculatus_F_contig11134.1029.1 ID=prot_H-canaliculatus_F_contig11134.1029.1|Name=mRNA_H-canaliculatus_F_contig11134.1029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MAKKQLVTPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANI
RIMVPLQQGNVYVQDGIDSSSLRIVYDKAAPGNGGVGAV
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mRNA from alignment at H-canaliculatus_F_contig11134:3477..4306-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11134.1029.1 ID=mRNA_H-canaliculatus_F_contig11134.1029.1|Name=mRNA_H-canaliculatus_F_contig11134.1029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11134:3477..4306- (Hapterophycus canaliculatus Oshoro5f female)
CAGCTATGGGGCGTGGACGTGAATACGATGGCCAAGAAGCAGCTGGTGAC CCCCCCCAACGACGGCGACACGGAGGAAAACCTCAGCTTGGAGGAGAAGC TCAGGAGAGAGAGGCAGCGGCTTCATGCGACGGGGGTGACGTCTTTTTTC TGGTCCTCCAGAGGGAGTGCCAACATCCGCATCATGGTTCCGCTGCAGGT GGGCTTTGAGAAGCGAGAGGTGTCTCGGTTGGGGAGCTGAAATCCAGGGT GATGGTGGCAGCGAGGAGGACCGGGGGGGCGGGGGGGGAGGCTCTTTTTT TTGTCTACGTGGTCAACCGCAGGAAGGGCCAGGATCCGTGGAATGGGGCG TCGCTCCAGCGTCGTGGTTGGCGTAAGAGTGGGATAAGGTTGAACAGGGG GCGGGGGGGACAGTAAGGAAGGGCTCCGAAGGGAAGGAGAGCGGAACGGC GTGGGTGGAGAGACCTGCTGCCCCTCGGCTCGCGAATGGTTTCGCCTCTC CGACCGGTGCGTCTGTTGTTCTTCCGCGGGTGAACGGGGCGCTTCCGATG CTTGGTATTACGCCGCGTCGCGGGCGCCGGCGCAGCCCGATACACGAGTC CTTACCGCTCTTGACGGAATACGCCCGTGAGGCCTTCCATCTGCCTGCCG GCGTGCCCGCCCGCCTGCCCGCCCGCGTCGTGGCCGACACGCCTTCTCCT GTTTCACTTTTCCGACGCGCTGCGATCCGTCGAGCAGGGAAACGTGTACG TGCAGGACGGCATCGACTCGTCCAGCCTGAGGATAGTCTACGACAAGGCC GCGCCGGGTAACGGCGGCGTCGGTGCGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11134:3477..4306-

>mRNA_H-canaliculatus_F_contig11134.1029.1 ID=mRNA_H-canaliculatus_F_contig11134.1029.1|Name=mRNA_H-canaliculatus_F_contig11134.1029.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11134:3477..4306- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCAAGAAGCAGCTGGTGACCCCCCCCAACGACGGCGACACGGAGGA
AAACCTCAGCTTGGAGGAGAAGCTCAGGAGAGAGAGGCAGCGGCTTCATG
CGACGGGGGTGACGTCTTTTTTCTGGTCCTCCAGAGGGAGTGCCAACATC
CGCATCATGGTTCCGCTGCAGATGGCCAAGAAGCAGCTGGTGACCCCCCC
CAACGACGGCGACACGGAGGAAAACCTCAGCTTGGAGGAGAAGCTCAGGA
GAGAGAGGCAGCGGCTTCATGCGACGGGGGTGACGTCTTTTTTCTGGTCC
TCCAGAGGGAGTGCCAACATCCGCATCATGGTTCCGCTGCAGCAGGGAAA
CGTGTACGTGCAGGACGGCATCGACTCGTCCAGCCTGAGGATAGTCTACG
ACAAGGCCGCGCCGGGTAACGGCGGCGTCGGTGCGGTCCAGGGAAACGTG
TACGTGCAGGACGGCATCGACTCGTCCAGCCTGAGGATAGTCTACGACAA
GGCCGCGCCGGGTAACGGCGGCGTCGGTGCGGTC
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