mRNA_H-canaliculatus_F_contig11131.1027.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11131.1027.1
Unique NamemRNA_H-canaliculatus_F_contig11131.1027.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: D8LSE0_ECTSI (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE0_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.790e-87
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 1
Query:    1 QIAVGLPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHTPEALGAKLTIYLAAVIGAITATGSVTAFAKLQVS 510
            +I +GLPVA G+ ALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGN LGVGGV LGLA+TVGLMY AGVPPEVFAQMA LMGVGG+AGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISEL+GH PEALGAKLTIYLAAVIGAITATGSVTAFAKLQ S
Sbjct:  518 EITIGLPVAVGLGALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNVLGVGGVTLGLAATVGLMYHAGVPPEVFAQMAALMGVGGVAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELVGHPPEALGAKLTIYLAAVIGAITATGSVTAFAKLQGS 687          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A6H5JMZ8_9PHAE (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ8_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 3.620e-86
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 1
Query:    1 QIAVGLPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHTPEALGAKLTIYLAAVIGAITATGSVTAFAKLQ--VSDSP 519
            +I VGLPVA G+ ALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGN LGVGGV LGLA+TVGLMY AGVPPEVFAQMA LMGVGG+AGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISEL+GH PEALGAKLTIYLAAVIGAITATGSVTAFAKLQ  +S SP
Sbjct:  650 EITVGLPVAVGLGALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNVLGVGGVTLGLAATVGLMYHAGVPPEVFAQMAALMGVGGVAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELVGHPPEALGAKLTIYLAAVIGAITATGSVTAFAKLQGILSSSP 824          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A7S2GVV6_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVV6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.560e-37
Identity = 87/166 (52.41%), Postives = 107/166 (64.46%), Query Frame = 1
Query:   16 LPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHTPE---ALGAKLTIYLAAVIGAITATGSVTAFAKLQ 504
            LPV  G  A A G  +GY  +++     +AV C+  IGGL++QSTAR GNALG+ GVALG+A+T+  +  +G PPE F Q+AGLM  GG  G   A  VGPTELPQTVA FHSLVG AA  TA+ E +   P    ALGA    +LA  IG +TA GS+ AF KLQ
Sbjct:  311 LPVGLGALATAGGTALGYENINDVIAAGAAVSCIAGIGGLATQSTARAGNALGMSGVALGVAATLAGLASSGAPPETFIQIAGLMAAGGAVGTLGASIVGPTELPQTVALFHSLVGVAAAVTAVGEYMHAGPGSELALGASGLAFLATFIGGVTAAGSLVAFGKLQ 476          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A7S1TA64_9CHLO (Proton-translocating NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1TA64_9CHLO)

HSP 1 Score: 133 bits (335), Expect = 8.580e-34
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 1
Query:    4 IAVGLPVATGIAALAA-GETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAG-VPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHTPEALGA-----KLTIYLAAVIGAITATGSVTAFAKLQ 504
            +A GL     +AA+AA G    ++ ++  A L S + C+ +IGGLSSQSTA  GN LG+ GV LG+A+T+GL+  +G VPPE F QM G++ VGG  G+ +A  V  TELPQ VAAFHSLVG AA+AT+++  +  T E + A     K  IY  + IG+IT TGS+ AFAKLQ
Sbjct:  154 MAAGLLGTYAVAAVAASGSATSFAAMTEMAYLTSGLACLGAIGGLSSQSTAGLGNKLGITGVTLGVAATLGLIASSGDVPPEAFMQMLGVVTVGGATGFGIAKAVEVTELPQLVAAFHSLVGFAASATSVAGFLSETGEGIEALDPIHKWAIYAGSAIGSITLTGSLVAFAKLQ 327          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A6V2UXD4_HETAK (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2UXD4_HETAK)

HSP 1 Score: 130 bits (328), Expect = 6.050e-32
Identity = 85/166 (51.20%), Postives = 108/166 (65.06%), Query Frame = 1
Query:   19 PVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHT--PEALGA-KL-TIYLAAVIGAITATGSVTAFAKLQ 504
            P    +   A  + +G +E+   A +A+ + C+  IGGLSSQ TAR GN LG+ GV+ GLA+T+G+M  A      + Q+A L G GG  GY +A +VGPTELPQTVAAFHSLVG AA  TA ++ + H   P AL A +L +IYLA  IG ITATGSV AF KLQ
Sbjct:  591 PAGAFVGGYALAKGLGCAEVDTVASVAAGLCCVGGIGGLSSQKTARMGNVLGMSGVSFGLAATLGMMAPADA--GTYGQLALLAGAGGATGYQIAKRVGPTELPQTVAAFHSLVGLAAAGTAAADYLHHMHDPAALDAIRLGSIYLATWIGGITATGSVVAFGKLQ 754          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A7S3ZS77_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZS77_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.120e-31
Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   73 ELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISE---LIGHTPEALGA--KLTIYLAAVIGAITATGSVTAFAKLQ 504
            +L+    LAS + C+  I GL+ Q TAR GN LG  GV LG+  T+G M+     P    Q+AGL+GVGG AGYA+A KVGPTELPQTVAAFHSLVG AA ATA+ E   L  H P ++ A    ++YLA  IG ITATGSV AF KL 
Sbjct:  576 DLAPVVSLASGLCCIGGIAGLAEQHTARLGNTLGQAGVTLGMGVTLGAMHP---DPATALQIAGLLGVGGGAGYAIASKVGPTELPQTVAAFHSLVGVAAAATAVGEYVHLTEHGPASIDAVTNTSLYLATWIGGITATGSVVAFGKLN 721          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A7S2V6K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.990e-31
Identity = 80/166 (48.19%), Postives = 101/166 (60.84%), Query Frame = 1
Query:   19 PVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHT--PEAL-GAKL-TIYLAAVIGAITATGSVTAFAKLQ 504
            P A  +   A  +TMG+SE+ +  GLAS+  C+            R GN LG+ GV+ GLA+ +G M    V P V+AQ+A L   GG  GY +A KVGPTELPQTVAAFHSLVG AA  TA+ + + H   P  L G +L +IYLA  IG +TATGS+ AF KL 
Sbjct:   32 PAAAMVGGYAVAKTMGFSEMDSVMGLASSACCIGGXXXXXXXXXXRMGNVLGMSGVSFGLAAAMGSMN---VSPAVYAQLAALSLGGGAVGYQIAKKVGPTELPQTVAAFHSLVGLAAVGTAVGDYMHHMHDPAMLDGIRLASIYLATFIGGVTATGSMVAFGKLH 194          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A835ZE55_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE55_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.480e-30
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = 1
Query:   16 LPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIG--HTPEAL--GAKL-TIYLAAVIGAITATGSVTAFAKLQ 504
            +P A  +      + MGY+++   A   +A  C+  IGGLSSQ TAR GN LG+ GV +G+ +T+G +  A   P++  Q  GLMG GG  GYA+A KVGPTELPQTVAAFHSLVG AA   A+ + +   H P  +  G +L +IYLA  IG  TATGS+ AF KLQ
Sbjct:  601 IPAAVFVGGYGLAKGMGYAQMDAIASTVAATCCIGGIGGLSSQKTARLGNVLGMSGVGIGVVATLGTI--APTLPQLL-QATGLMGAGGALGYALAKKVGPTELPQTVAAFHSLVGMAAMGGAVGDYLHCLHDPSIVLDGVRLVSIYLATFIGGATATGSLVAFGKLQ 765          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A1I7S6E6_BURXY (Proton-translocating NAD(P)(+) transhydrogenase n=2 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S6E6_BURXY)

HSP 1 Score: 125 bits (315), Expect = 3.350e-30
Identity = 79/176 (44.89%), Postives = 107/176 (60.80%), Query Frame = 1
Query:   13 GLPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELIGHT-----PEALGAKLTIYLAAVIGAITATGSVTAFAKLQ--VSDSP 519
            GLP AT +A  +   + G+ E+  FAGLA+++ C+ ++ GLS+QSTAR GNALG+ GVA G+  T+G +       E  AQ+   +G+GGL G  +A K+  TELPQ VA FHS VG AA  T ISE + H+     P     +  ++L   IG IT TGS+ AF KLQ  +S SP
Sbjct:  616 GLPAATFLATYSLAASQGFPEVHQFAGLAASLCCVGALAGLSNQSTARLGNALGMIGVAGGIGCTIGALAPGA---EQLAQIGAALGLGGLIGVGIARKINVTELPQLVALFHSFVGVAAATTCISEFLAHSSDFSDPAGTAVRTALFLGTFIGGITFTGSLMAFGKLQGILSSSP 788          
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Match: A0A6T6B5N6_DIALT (Proton-translocating NAD(P)(+) transhydrogenase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A6T6B5N6_DIALT)

HSP 1 Score: 124 bits (310), Expect = 1.570e-29
Identity = 85/171 (49.71%), Postives = 98/171 (57.31%), Query Frame = 1
Query:   16 LPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQSTARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAVAGKVGPTELPQTVAAFHSLVGAAATATAISELI-----GH-TPEALGAKLTIYLAAVIGAITATGSVTAFAKLQVS 510
            LP A  +  LA  +  G        GLAS V C+ +IGGL  QSTAR GN +GV GV  GL +T+G    AG       Q+A L+G G   G  VA +VGPTELPQTVA FHSLVG AA ATAI E +     GH TP A  A   IY A  +G IT TGS+ AF KL  S
Sbjct:  544 LPAAVLLGGLAYVQRAGSMYGHTVVGLASGVACISAIGGLGKQSTARLGNTIGVVGVLFGLCATLGAQLAAGATAAGVKQLAALIGAGAAIGLGVASRVGPTELPQTVAGFHSLVGGAAVATAIGEYLLRMSAGHMTPLAAAA---IYAATFLGGITVTGSIVAFGKLNGS 711          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11131.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE0_ECTSI3.790e-8791.18Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A6H5JMZ8_9PHAE3.620e-8690.29Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2GVV6_9STRA5.560e-3752.41Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S1TA64_9CHLO8.580e-3449.43Proton-translocating NAD(P)(+) transhydrogenase (F... [more]
A0A6V2UXD4_HETAK6.050e-3251.20Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S3ZS77_9STRA1.120e-3155.03Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2V6K6_9STRA5.990e-3148.19Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZE55_9STRA2.480e-3048.81Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A1I7S6E6_BURXY3.350e-3044.89Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A6T6B5N6_DIALT1.570e-2949.71Proton-translocating NAD(P)(+) transhydrogenase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11131contigH-canaliculatus_F_contig11131:953..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.6
Seed ortholog evalue3.1e-74
Seed eggNOG ortholog2880.D8LSE0
KEGG rclassRC00001
KEGG koko:K00323
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.Transhydrogenase
EggNOG OGs2QQ0A@2759,COG1282@1
EC1.6.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons4
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11131.1027.1prot_H-canaliculatus_F_contig11131.1027.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11131 953..3749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.828346-CDS-H-canaliculatus_F_contig11131:952..10721622928791.828346-CDS-H-canaliculatus_F_contig11131:952..1072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 953..1072 +
1696845565.9381423-CDS-H-canaliculatus_F_contig11131:952..10721696845565.9381423-CDS-H-canaliculatus_F_contig11131:952..1072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 953..1072 +
1622928791.8400576-CDS-H-canaliculatus_F_contig11131:1902..20911622928791.8400576-CDS-H-canaliculatus_F_contig11131:1902..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 1903..2091 +
1696845565.9486175-CDS-H-canaliculatus_F_contig11131:1902..20911696845565.9486175-CDS-H-canaliculatus_F_contig11131:1902..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 1903..2091 +
1622928791.8522515-CDS-H-canaliculatus_F_contig11131:2372..24771622928791.8522515-CDS-H-canaliculatus_F_contig11131:2372..2477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 2373..2477 +
1696845565.95679-CDS-H-canaliculatus_F_contig11131:2372..24771696845565.95679-CDS-H-canaliculatus_F_contig11131:2372..2477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 2373..2477 +
1622928791.8621244-CDS-H-canaliculatus_F_contig11131:3629..37491622928791.8621244-CDS-H-canaliculatus_F_contig11131:3629..3749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 3630..3749 +
1696845565.9648497-CDS-H-canaliculatus_F_contig11131:3629..37491696845565.9648497-CDS-H-canaliculatus_F_contig11131:3629..3749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11131 3630..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11131.1027.1

>prot_H-canaliculatus_F_contig11131.1027.1 ID=prot_H-canaliculatus_F_contig11131.1027.1|Name=mRNA_H-canaliculatus_F_contig11131.1027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
QIAVGLPVATGIAALAAGETMGYSELSNFAGLASAVMCMQSIGGLSSQST
ARFGNALGVGGVALGLASTVGLMYQAGVPPEVFAQMAGLMGVGGLAGYAV
AGKVGPTELPQTVAAFHSLVGAAATATAISELIGHTPEALGAKLTIYLAA
VIGAITATGSVTAFAKLQVSDSPYDYL*
back to top

mRNA from alignment at H-canaliculatus_F_contig11131:953..3749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11131.1027.1 ID=mRNA_H-canaliculatus_F_contig11131.1027.1|Name=mRNA_H-canaliculatus_F_contig11131.1027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2797bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11131:953..3749+ (Hapterophycus canaliculatus Oshoro5f female)
CAGATTGCGGTCGGGCTGCCCGTCGCCACGGGCATCGCCGCCCTCGCCGC GGGAGAGACCATGGGCTACTCGGAGCTGTCCAACTTCGCCGGGCTTGCCT CGGCGGTGATGTGTATGCAGGTGTGCTGCGGGTCGACACGGTAAAGCGCG TGCGGATGGACGGTGCTTGGTTACTTGAATCGCAGGACGCGTTGCTGCTT GTGCAAGCGCTCGTAGCGGAAGCAAAGACAAGATAGGTGTAGACTTTACC TACGAAGCAAACAGCACACACGCCGCGCGGTTTCGTCAGGAGCGGCGGCG GTGAGAGCGACAGGGGCGCTGAAGTAGGAGGCGGTGGCTGGCTGGCTGGC TGGCTGTTGGTTGGGGTGCGACCTACCCGTGCGCGCCGTTTGGTGGCGTG ATCAAAGAACAAGAGCGACCTTGAACTGATTCAGCGCCTCTCGAAGCATG TCGTCGGTCAATTTTGCTCGATCGTGAGCTCGGCGTATCCGCTCCCGTCC CCTCCCCTTCCACCCCCTCCCCTCCAGTGATTTTGTTTCGCCTACTCGGT CACCTCCTGCTCCCGGCATCCGTGAAGTAGTCCACACAAGAAACCTCTCA TGCACGAAATCGAACCACCCCGTAGCGGCGCATCGGTCGTCCCTCCAACA CCTCCCGTCTTCCGTACAACGCGATCCACTCGCTTCCTGTTTCGGCGATC CCGAGCGAAATCCTTTGACCCACATCCATCGATCGCCCTCACGCCCTCTC GGCGCTTTTCGCGTGTGCATCTCCCCCCCACCAGCCAAACCCGCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCACGCCCTTTTCCCGTGGGCATCCCCCCCCCCCCCCCCCTCCCCCCCCC CCCCCCCCCCCCCCCCTTCGGCCGGTTTCCTCTCGCCCACCGACGAAAAG AGCATCGGCGGCCTGTCGTCCCAAAGCACAGCTAGGTTCGGCAACGCGCT CGGCGTCGGGGGCGTCGCCCTCGGTCTCGCATCGACCGTCGGTCTCATGT ACCAGGCCGGGGTGCCGCCGGAGGTGTTCGCGCAGATGGCCGGGCTGATG GGGGTGGGCGGGCTCGCGGGGTACGCCGTCGCCGGAAAGGTGGGTCCATT CTTACGCGCGTTCGTCGGCGCTGGTGGCTTTAGTGGTGAGGTTTTTTCGT TTGTTTTTTCTCTTGTAGTGCTACTTGAGGGTGTCGCTGCGTACGTATGT AGCGAAGGGAAGCGTCGGCGACCGCGACGTGCCTCTGTCCCCGCTCCTCC GTCCCGATCTCTCCCGCTCCCGTTTGTTTGCCCCTCGACGTCGTTTTTCC CCGACGCACGATGGACGAACTTGTCTGGCTGGCGATCTCGTCCGACGGTT GACTCGCACGACGACGACAGGTTGGACCTACCGAGCTGCCGCAAACCGTG GCCGCCTTCCACTCGCTCGTGGGCGCGGCCGCGACGGCGACGGCGATCTC GGAGTTGATCGGACACACGCCCGAGGTGAGCGGGAGTGACTCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCNNNNNNNNNNAGCCGGGCGGGGGCGGGGGGC GGCGGGGTTCTCGGGGTTTGACGGGCACCCCCCCGGGGGGGGGGGGGGGG CCCCCCCCCCCCCCCCCCCCCCGGCCCCCTGCCCCCCCTGCCCACCCCCT TCCCATGCGGGGAGACCCCTCAAGGGCGTGCGCGCTCTTGCACTTTTCTG TGAATATTTCGTGTTTGAGCGCGTGATCGATGTGTTCGTCGAAAAAGAGA GTGAGCAGCAGCTGCTGTGGTGTTGAGGACAAGCAGCTGCTGCTGCTGCT GCTTCTGCTTTTTCGGAAGGACCCCGCGGGAGGTGTTGGAAAAAAATGTG CGAAAGACGGAGCGGGAGTGATGGCAATTTGAAGAGACGCGAGCTTGTGG AATCAGAGACGCGGTGCCGCGAGCTGGCGTCGGCGGCGACAACGGGGACG GGCGATCGAAGACGTGGGCTCCCGAGAGCTATCCCTGGGGTTTGTTTATC GTGCCGTGATCCTGTTGCGGTCGAGGTGCAGGGGCCTTACGCTTTTGATT CGCCAGGACAGCAGCAACGACGCTGTTCGTCGTCACGCCGCACAAAAAAT GAAGCAGCCCGGCGAGCGAAGACGCCGCCCGTCCTCTCTTTTTCCGTCAA GGCGGAAGAGGCGGTGTTGTCGTGGGGCGACCAGAAATGTCCACGATGAG ATAGAAAAGCCTTCGTCCGCCCGCTCGGCTGTCCGCTTTTCCAAATCGCG TTCAGCAGTGTGTCGGTGCGCTGCGATGAAGCCCGTTGAAGGCGAAGCAG CGCCACCATCCTTTTCACCTTCCAAGGGGCGGTTAGGTGCTTGCGCCCGG CGCGCGTCGGTTCACCTTACCTCCATTTTTCGGCGCATTGCATGTACACC ACAAACACGAGCGTTGGTGGAGGCGTTGTCTTGGTGGTCGAAGCTCTATC GATCGATCGCAATGTTTTTCCTTTCTCAGTTGCTGTTCCCCCTCGCGTTC ACCCCGCCAATCGCTCACCTCGTCTCGCCCACGTGCGTGCCGACGCCGCT GCCGCCGTCTTCAATGTGTTCGGACAGGCGTTGGGTGCGAAGCTAACCAT CTACCTGGCGGCCGTAATCGGAGCCATCACCGCCACCGGATCTGTGACCG CCTTCGCAAAGCTCCAGGTAAGCGATTCGCCGTATGACTACTTGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11131:953..3749+

>mRNA_H-canaliculatus_F_contig11131.1027.1 ID=mRNA_H-canaliculatus_F_contig11131.1027.1|Name=mRNA_H-canaliculatus_F_contig11131.1027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11131:953..3749+ (Hapterophycus canaliculatus Oshoro5f female)
CAGATTGCGGTCGGGCTGCCCGTCGCCACGGGCATCGCCGCCCTCGCCGC
GGGAGAGACCATGGGCTACTCGGAGCTGTCCAACTTCGCCGGGCTTGCCT
CGGCGGTGATGTGTATGCAGCAGATTGCGGTCGGGCTGCCCGTCGCCACG
GGCATCGCCGCCCTCGCCGCGGGAGAGACCATGGGCTACTCGGAGCTGTC
CAACTTCGCCGGGCTTGCCTCGGCGGTGATGTGTATGCAGAGCATCGGCG
GCCTGTCGTCCCAAAGCACAGCTAGGTTCGGCAACGCGCTCGGCGTCGGG
GGCGTCGCCCTCGGTCTCGCATCGACCGTCGGTCTCATGTACCAGGCCGG
GGTGCCGCCGGAGGTGTTCGCGCAGATGGCCGGGCTGATGGGGGTGGGCG
GGCTCGCGGGGTACGCCGTCGCCGGAAAGAGCATCGGCGGCCTGTCGTCC
CAAAGCACAGCTAGGTTCGGCAACGCGCTCGGCGTCGGGGGCGTCGCCCT
CGGTCTCGCATCGACCGTCGGTCTCATGTACCAGGCCGGGGTGCCGCCGG
AGGTGTTCGCGCAGATGGCCGGGCTGATGGGGGTGGGCGGGCTCGCGGGG
TACGCCGTCGCCGGAAAGGTTGGACCTACCGAGCTGCCGCAAACCGTGGC
CGCCTTCCACTCGCTCGTGGGCGCGGCCGCGACGGCGACGGCGATCTCGG
AGTTGATCGGACACACGCCCGAGGTTGGACCTACCGAGCTGCCGCAAACC
GTGGCCGCCTTCCACTCGCTCGTGGGCGCGGCCGCGACGGCGACGGCGAT
CTCGGAGTTGATCGGACACACGCCCGAGGCGTTGGGTGCGAAGCTAACCA
TCTACCTGGCGGCCGTAATCGGAGCCATCACCGCCACCGGATCTGTGACC
GCCTTCGCAAAGCTCCAGGTAAGCGATTCGCCGTATGACTACTTGTAGGC
GTTGGGTGCGAAGCTAACCATCTACCTGGCGGCCGTAATCGGAGCCATCA
CCGCCACCGGATCTGTGACCGCCTTCGCAAAGCTCCAGGTAAGCGATTCG
CCGTATGACTACTTGTAG
back to top