mRNA_H-canaliculatus_F_contig11125.1020.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11125.1020.1
Unique NamemRNA_H-canaliculatus_F_contig11125.1020.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11125.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11125contigH-canaliculatus_F_contig11125:597..2649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size455
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11125.1020.1prot_H-canaliculatus_F_contig11125.1020.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11125 597..2647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928790.731807-CDS-H-canaliculatus_F_contig11125:596..6641622928790.731807-CDS-H-canaliculatus_F_contig11125:596..664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 597..664 +
1696845565.421176-CDS-H-canaliculatus_F_contig11125:596..6641696845565.421176-CDS-H-canaliculatus_F_contig11125:596..664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 597..664 +
1622928790.7521334-CDS-H-canaliculatus_F_contig11125:1211..12971622928790.7521334-CDS-H-canaliculatus_F_contig11125:1211..1297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 1212..1297 +
1696845565.4317398-CDS-H-canaliculatus_F_contig11125:1211..12971696845565.4317398-CDS-H-canaliculatus_F_contig11125:1211..1297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 1212..1297 +
1622928790.7948534-CDS-H-canaliculatus_F_contig11125:1809..20231622928790.7948534-CDS-H-canaliculatus_F_contig11125:1809..2023Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 1810..2023 +
1696845565.4426649-CDS-H-canaliculatus_F_contig11125:1809..20231696845565.4426649-CDS-H-canaliculatus_F_contig11125:1809..2023Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 1810..2023 +
1622928790.8168445-CDS-H-canaliculatus_F_contig11125:2562..26471622928790.8168445-CDS-H-canaliculatus_F_contig11125:2562..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 2563..2647 +
1696845565.4509377-CDS-H-canaliculatus_F_contig11125:2562..26471696845565.4509377-CDS-H-canaliculatus_F_contig11125:2562..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11125 2563..2647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11125.1020.1

>prot_H-canaliculatus_F_contig11125.1020.1 ID=prot_H-canaliculatus_F_contig11125.1020.1|Name=mRNA_H-canaliculatus_F_contig11125.1020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
APAPGPPPVAAAGCWGAGSVYISWNGSGYTSGEQRHGARGVFNGTGGRGT
VGGWTNWPVEVGLSRPNGAGLDNHATRREEQVHPVLAPAAAVAAVPQPAT
ATAADTPPVAAAGCWGAGSVYISWTVSRYASGEQRGGVRPVFNGAGGRGT
V
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mRNA from alignment at H-canaliculatus_F_contig11125:597..2649+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11125.1020.1 ID=mRNA_H-canaliculatus_F_contig11125.1020.1|Name=mRNA_H-canaliculatus_F_contig11125.1020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2053bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11125:597..2649+ (Hapterophycus canaliculatus Oshoro5f female)
GCACCAGCACCAGGTCCACCACCAGTGGCAGCAGCAGGCTGCTGGGGGGC
GGGCTCCGTCTACATCTCGTGAGTTTGAATGGACCCCGAAGTCGTTCCTC
TAATGCGACTGCTGCTGCTAGCACCGTCTCCGGCATCGTACCGTGGGGGC
CTGCGTCTCACGCAACTCGAGCTAGAAGGGTCATGTTGACGCCAATACAT
CCTCATGCCGCCGTGTTGGGCTTGTTGACTACCGCGACAGCTCCAATACC
CGCGTTGATAATGTCGTGAGCATCAGCAGCCGTCCGTTCCCGTTTCCTGC
GTGGAGTCCACCTGCCCGGCCCCCTAGTAAGCTGAGATGAAGCTTGCGTA
GATACCACGTTTCTACTGGCGCCGCGCTGCGATGGTGTTGCTATGGGTGC
AGAGTGCTGGAGAACACGCGATAATGCACCACAGCGACGAAACACTGAAC
CTTGTGACAGTACACGCTTGTACGCCCACACACCGCTCTTGTCTACGTTT
CCCCCGCCACCGTGGCATTGATGTGTCTGTTCCGTTGAATGTTTTCCTCA
TGGAAGGGACACCATTCTCCTTGTTTGCCCGCACCGTCCCGATTGGGTCC
CTCCCCGCCCCACAGGTGGAATGGGTCGGGGTACACCAGCGGCGAGCAGC
GGCATGGGGCACGGGGTGTTTTCAATGGGACGGGCGGCCGCGGTACCGTC
GGTAAGCAAACGGAGGATAATACTTTGGTTTGCTCTCTATGCGCTCTGGT
TTACACTGCCTTGATGTGTTTGTTTTCACTCAGACGAATCAATCACCTCT
GTGGCGCCGGCAGGACGGAGCGGAGCGAGTGGCAGGTCGTTGCCGTTACT
TTCAAGAAAAACAAAGACGTGCTTGCTCGGCGAAAACAAAATGCCCCGAC
CATCAGGAGTGGTGGCGTACAAGTCGACGATCCAATGTCTCCGACTTGAT
GGCTGTCTGCGTAGAAAGAGTGTGAATCTATATTTTGGGGGTGGGAGGGG
GTCGCTATCCCTCGCGATGGTGCCCTTGCTCGCTACACCACTGTAACCGT
TGGTCTTTACCTTGCGTACCTCGATGCTGCTGCTGGTGTAGTGGATGTCG
TATTTCCAGCTCCTCAGTTCGCTTTTATTCAGAACCACATCGTCGAGACC
TGTCACCGTAAGGTTTGTTTGAACGCCGTCCATGGCGTCCACTTCCGTAT
GTCCCTTCTCCAGGCGGATGGACGAATTGGCCCGTCGAAGTCGGGCTGTC
GAGACCGAACGGCGCCGGCCTCGACAACCACGCAACTCGGCGCGAGGAGC
AAGTTCATCCCGTACTTGCACCCGCAGCCGCAGTCGCAGCCGTACCCCAA
CCAGCAACAGCGACAGCAGCAGATACACCACCAGTGGCAGCAGCAGGCTG
CTGGGGGGCGGGCTCCGTCTACATCTCGTGAGTTTGAATGGACCCCGAAG
TCATTCCTGTAATGCGACTGCTGCTGCTAGCACCGTCTCCGGCATCGAAC
CGGGGGGGCCTGCGTCTCACGCAACTCGAGCTAGAAGGGTCGTGTTGACA
CCAATACATCCTCATGCGGCCGTGTTGGGCTTGTTGACTACCGCGATAGC
TCCAACACCCGCGTCGATAATGTCTTGAGCATCAGCAGCCGTCCGTTCCC
GTTTACTGCGTGGAGTCCCCCTGCCCGGCCCCCTAGGAAGCTGAGATGAA
GCTTGCGTAGATACCACGTTTCTCCTGGCACCGCGCTGCGATGGTGTTGC
TATGGGTGCAGAGTGCTGGAGAATACGCAATGATGCACCAAATCGATGAG
AGACGTTATGGTATGCGCTTGTCCGCCCACACACCGCTCTTGTCTACTAC
TCCGCCGCCACCGTGGCATTGATGTGTCTGTTCCGTTGAATGCTTTCCTC
ATGGAAGGGACATCATTCTCCTTGTTTGCTTGCCCCCTCCCGATTGGGTC
CCTCCCCGCCCCACAGGTGGACTGTGTCACGGTACGCCAGCGGCGAGCAA
CGGGGTGGGGTTCGGCCTGTTTTCAATGGGGCGGGCGGCCGCGGTACCGT
CGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11125:597..2649+

>mRNA_H-canaliculatus_F_contig11125.1020.1 ID=mRNA_H-canaliculatus_F_contig11125.1020.1|Name=mRNA_H-canaliculatus_F_contig11125.1020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11125:597..2649+ (Hapterophycus canaliculatus Oshoro5f female)
GCACCAGCACCAGGTCCACCACCAGTGGCAGCAGCAGGCTGCTGGGGGGC
GGGCTCCGTCTACATCTCGCACCAGCACCAGGTCCACCACCAGTGGCAGC
AGCAGGCTGCTGGGGGGCGGGCTCCGTCTACATCTCGTGGAATGGGTCGG
GGTACACCAGCGGCGAGCAGCGGCATGGGGCACGGGGTGTTTTCAATGGG
ACGGGCGGCCGCGGTACCGTCGGTGGAATGGGTCGGGGTACACCAGCGGC
GAGCAGCGGCATGGGGCACGGGGTGTTTTCAATGGGACGGGCGGCCGCGG
TACCGTCGGCGGATGGACGAATTGGCCCGTCGAAGTCGGGCTGTCGAGAC
CGAACGGCGCCGGCCTCGACAACCACGCAACTCGGCGCGAGGAGCAAGTT
CATCCCGTACTTGCACCCGCAGCCGCAGTCGCAGCCGTACCCCAACCAGC
AACAGCGACAGCAGCAGATACACCACCAGTGGCAGCAGCAGGCTGCTGGG
GGGCGGGCTCCGTCTACATCTCGCGGATGGACGAATTGGCCCGTCGAAGT
CGGGCTGTCGAGACCGAACGGCGCCGGCCTCGACAACCACGCAACTCGGC
GCGAGGAGCAAGTTCATCCCGTACTTGCACCCGCAGCCGCAGTCGCAGCC
GTACCCCAACCAGCAACAGCGACAGCAGCAGATACACCACCAGTGGCAGC
AGCAGGCTGCTGGGGGGCGGGCTCCGTCTACATCTCGTGGACTGTGTCAC
GGTACGCCAGCGGCGAGCAACGGGGTGGGGTTCGGCCTGTTTTCAATGGG
GCGGGCGGCCGCGGTACCGTCGTGGACTGTGTCACGGTACGCCAGCGGCG
AGCAACGGGGTGGGGTTCGGCCTGTTTTCAATGGGGCGGGCGGCCGCGGT
ACCGTC
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