mRNA_H-canaliculatus_F_contig11116.1013.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11116.1013.1
Unique NamemRNA_H-canaliculatus_F_contig11116.1013.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11116.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11116contigH-canaliculatus_F_contig11116:1365..1959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928789.6254873-UTR-H-canaliculatus_F_contig11116:1364..15451622928789.6254873-UTR-H-canaliculatus_F_contig11116:1364..1545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11116 1365..1545 +
1696845564.947157-UTR-H-canaliculatus_F_contig11116:1364..15451696845564.947157-UTR-H-canaliculatus_F_contig11116:1364..1545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11116 1365..1545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928789.6401374-CDS-H-canaliculatus_F_contig11116:1545..19591622928789.6401374-CDS-H-canaliculatus_F_contig11116:1545..1959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11116 1546..1959 +
1696845564.959529-CDS-H-canaliculatus_F_contig11116:1545..19591696845564.959529-CDS-H-canaliculatus_F_contig11116:1545..1959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11116 1546..1959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11116.1013.1prot_H-canaliculatus_F_contig11116.1013.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11116 1546..1959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11116.1013.1

>prot_H-canaliculatus_F_contig11116.1013.1 ID=prot_H-canaliculatus_F_contig11116.1013.1|Name=mRNA_H-canaliculatus_F_contig11116.1013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
MLSLYPSAPLHFALPALCVKHAATLIRSYACGEVALRSREGSSSVSPVGN
LEQYSTPARIPRAACVCRLRSPTDGTTLSQLVVALIAHAEGGLPQRWIFC
VGGMVCSAPRTHMIISVSKNESPVGRAVFSGTEHRASC
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mRNA from alignment at H-canaliculatus_F_contig11116:1365..1959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11116.1013.1 ID=mRNA_H-canaliculatus_F_contig11116.1013.1|Name=mRNA_H-canaliculatus_F_contig11116.1013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=595bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11116:1365..1959+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAACAATCGGAGAGGCAGAGAGAGAGATGCATAAGGAGACAAAAGCC
GCTGAGACATCAAAAGAGAGAGCAGTCGCAGGATTTCATCAAGAAGTTTA
CACGAACAGAAGCTGTACTTGGCAAGCGCCCCAGGGGTGTGGTTGTGGGC
CCTCGCTGATGATCTGTCAACCCTCGCAGAAATGCTGTCGCTCTATCCCA
GCGCGCCTCTTCACTTTGCCCTGCCCGCTTTGTGTGTGAAGCACGCAGCT
ACACTCATACGGTCTTATGCATGCGGAGAAGTCGCCCTGCGCAGCAGAGA
AGGCTCCAGCAGTGTTTCCCCTGTCGGAAATTTGGAGCAGTACAGTACAC
CTGCCCGGATACCCCGAGCCGCCTGTGTGTGCCGCTTGCGCTCTCCGACC
GACGGAACTACCCTCTCACAATTGGTGGTTGCTCTCATCGCTCATGCGGA
AGGCGGCCTGCCTCAGCGTTGGATTTTTTGTGTCGGCGGCATGGTGTGTT
CGGCCCCACGAACACATATGATAATATCCGTGTCTAAGAACGAATCCCCT
GTTGGCCGCGCGGTCTTTTCGGGAACCGAACATCGTGCATCGTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11116:1365..1959+

>mRNA_H-canaliculatus_F_contig11116.1013.1 ID=mRNA_H-canaliculatus_F_contig11116.1013.1|Name=mRNA_H-canaliculatus_F_contig11116.1013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11116:1365..1959+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGTCGCTCTATCCCAGCGCGCCTCTTCACTTTGCCCTGCCCGCTTT
GTGTGTGAAGCACGCAGCTACACTCATACGGTCTTATGCATGCGGAGAAG
TCGCCCTGCGCAGCAGAGAAGGCTCCAGCAGTGTTTCCCCTGTCGGAAAT
TTGGAGCAGTACAGTACACCTGCCCGGATACCCCGAGCCGCCTGTGTGTG
CCGCTTGCGCTCTCCGACCGACGGAACTACCCTCTCACAATTGGTGGTTG
CTCTCATCGCTCATGCGGAAGGCGGCCTGCCTCAGCGTTGGATTTTTTGT
GTCGGCGGCATGGTGTGTTCGGCCCCACGAACACATATGATAATATCCGT
GTCTAAGAACGAATCCCCTGTTGGCCGCGCGGTCTTTTCGGGAACCGAAC
ATCGTGCATCGTGCATGCTGTCGCTCTATCCCAGCGCGCCTCTTCACTTT
GCCCTGCCCGCTTTGTGTGTGAAGCACGCAGCTACACTCATACGGTCTTA
TGCATGCGGAGAAGTCGCCCTGCGCAGCAGAGAAGGCTCCAGCAGTGTTT
CCCCTGTCGGAAATTTGGAGCAGTACAGTACACCTGCCCGGATACCCCGA
GCCGCCTGTGTGTGCCGCTTGCGCTCTCCGACCGACGGAACTACCCTCTC
ACAATTGGTGGTTGCTCTCATCGCTCATGCGGAAGGCGGCCTGCCTCAGC
GTTGGATTTTTTGTGTCGGCGGCATGGTGTGTTCGGCCCCACGAACACAT
ATGATAATATCCGTGTCTAAGAACGAATCCCCTGTTGGCCGCGCGGTCTT
TTCGGGAACCGAACATCGTGCATCGTGC
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