mRNA_H-canaliculatus_F_contig11076.978.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11076.978.1
Unique NamemRNA_H-canaliculatus_F_contig11076.978.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11076.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11076contigH-canaliculatus_F_contig11076:2808..3260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.3969283-UTR-H-canaliculatus_F_contig11076:2807..29031622928783.3969283-UTR-H-canaliculatus_F_contig11076:2807..2903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11076 2808..2903 +
1696845562.5425699-UTR-H-canaliculatus_F_contig11076:2807..29031696845562.5425699-UTR-H-canaliculatus_F_contig11076:2807..2903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11076 2808..2903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.4086847-CDS-H-canaliculatus_F_contig11076:2903..32601622928783.4086847-CDS-H-canaliculatus_F_contig11076:2903..3260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11076 2904..3260 +
1696845562.5536547-CDS-H-canaliculatus_F_contig11076:2903..32601696845562.5536547-CDS-H-canaliculatus_F_contig11076:2903..3260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11076 2904..3260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11076.978.1prot_H-canaliculatus_F_contig11076.978.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11076 2904..3260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11076.978.1

>prot_H-canaliculatus_F_contig11076.978.1 ID=prot_H-canaliculatus_F_contig11076.978.1|Name=mRNA_H-canaliculatus_F_contig11076.978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MGVSTPPFAGPGKRWGRVKGPLRGRAAISLRLGRRGSNSAPAHPCCTRCI
SVNPALERVRRQAMEEPASICRFLETSAKELAIEARYTHVKLTTWTEIQG
ALRHAASFACLTARLASR*
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mRNA from alignment at H-canaliculatus_F_contig11076:2808..3260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11076.978.1 ID=mRNA_H-canaliculatus_F_contig11076.978.1|Name=mRNA_H-canaliculatus_F_contig11076.978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=453bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11076:2808..3260+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGATCCCATACAAGGTGCGCTGAGTTCAACGCTCCACAGCGCGCTGTA
TAGCCAACTCAGCACCCCTGTACAGTGTCAGGCGCCCTAAGTGTGGATGG
GAGTATCAACCCCACCCTTTGCCGGGCCCGGAAAACGATGGGGCAGAGTA
AAAGGTCCGCTGAGAGGACGGGCCGCGATTAGTCTGAGGTTGGGCCGCAG
AGGATCCAACAGCGCACCAGCGCACCCGTGCTGCACCCGGTGCATCAGCG
TCAATCCGGCGCTGGAGAGAGTACGGAGGCAGGCTATGGAGGAGCCAGCA
TCCATCTGCAGGTTTCTGGAGACATCGGCCAAGGAACTGGCCATCGAGGC
GCGTTATACCCACGTGAAACTGACGACCTGGACCGAAATCCAAGGGGCGC
TGAGACATGCGGCCAGTTTCGCATGTTTGACGGCGCGTTTGGCCTCTCGG
TGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11076:2808..3260+

>mRNA_H-canaliculatus_F_contig11076.978.1 ID=mRNA_H-canaliculatus_F_contig11076.978.1|Name=mRNA_H-canaliculatus_F_contig11076.978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11076:2808..3260+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGTATCAACCCCACCCTTTGCCGGGCCCGGAAAACGATGGGGCAG
AGTAAAAGGTCCGCTGAGAGGACGGGCCGCGATTAGTCTGAGGTTGGGCC
GCAGAGGATCCAACAGCGCACCAGCGCACCCGTGCTGCACCCGGTGCATC
AGCGTCAATCCGGCGCTGGAGAGAGTACGGAGGCAGGCTATGGAGGAGCC
AGCATCCATCTGCAGGTTTCTGGAGACATCGGCCAAGGAACTGGCCATCG
AGGCGCGTTATACCCACGTGAAACTGACGACCTGGACCGAAATCCAAGGG
GCGCTGAGACATGCGGCCAGTTTCGCATGTTTGACGGCGCGTTTGGCCTC
TCGGTGAATGGGAGTATCAACCCCACCCTTTGCCGGGCCCGGAAAACGAT
GGGGCAGAGTAAAAGGTCCGCTGAGAGGACGGGCCGCGATTAGTCTGAGG
TTGGGCCGCAGAGGATCCAACAGCGCACCAGCGCACCCGTGCTGCACCCG
GTGCATCAGCGTCAATCCGGCGCTGGAGAGAGTACGGAGGCAGGCTATGG
AGGAGCCAGCATCCATCTGCAGGTTTCTGGAGACATCGGCCAAGGAACTG
GCCATCGAGGCGCGTTATACCCACGTGAAACTGACGACCTGGACCGAAAT
CCAAGGGGCGCTGAGACATGCGGCCAGTTTCGCATGTTTGACGGCGCGTT
TGGCCTCTCGGTGA
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