mRNA_H-canaliculatus_F_contig11050.960.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11050.960.1
Unique NamemRNA_H-canaliculatus_F_contig11050.960.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11050.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11050contigH-canaliculatus_F_contig11050:791..1216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11050.960.1prot_H-canaliculatus_F_contig11050.960.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11050 809..1153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.6378696-UTR-H-canaliculatus_F_contig11050:790..8081622928780.6378696-UTR-H-canaliculatus_F_contig11050:790..808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11050 791..808 +
1696845561.5015512-UTR-H-canaliculatus_F_contig11050:790..8081696845561.5015512-UTR-H-canaliculatus_F_contig11050:790..808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11050 791..808 +
1622928780.6639867-UTR-H-canaliculatus_F_contig11050:1153..12161622928780.6639867-UTR-H-canaliculatus_F_contig11050:1153..1216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11050 1154..1216 +
1696845561.520759-UTR-H-canaliculatus_F_contig11050:1153..12161696845561.520759-UTR-H-canaliculatus_F_contig11050:1153..1216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11050 1154..1216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.6502657-CDS-H-canaliculatus_F_contig11050:808..11531622928780.6502657-CDS-H-canaliculatus_F_contig11050:808..1153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11050 809..1153 +
1696845561.5115464-CDS-H-canaliculatus_F_contig11050:808..11531696845561.5115464-CDS-H-canaliculatus_F_contig11050:808..1153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11050 809..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11050.960.1

>prot_H-canaliculatus_F_contig11050.960.1 ID=prot_H-canaliculatus_F_contig11050.960.1|Name=mRNA_H-canaliculatus_F_contig11050.960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MNIARSTRNTPSTFTIEIYRHAQSERNERPLPRRIGLQGTFVVALNLTYD
ARSLATWNRSQLNRLLSAPAAAIVSVSLSTRAATPRPPVLVLSLAFFSRG
CSPSRAGVNQPSKR*
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mRNA from alignment at H-canaliculatus_F_contig11050:791..1216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11050.960.1 ID=mRNA_H-canaliculatus_F_contig11050.960.1|Name=mRNA_H-canaliculatus_F_contig11050.960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11050:791..1216+ (Hapterophycus canaliculatus Oshoro5f female)
AAAATCGGATTGCGACCGATGAACATTGCTAGGTCGACCCGGAACACACC
ATCGACATTCACAATCGAAATTTATCGCCATGCTCAATCCGAGCGCAACG
AGCGCCCGCTGCCCCGTCGAATCGGGTTGCAAGGGACCTTCGTTGTCGCC
CTGAATCTGACTTACGACGCACGTTCTCTTGCCACCTGGAACCGGTCTCA
ACTCAACCGCCTCCTGTCTGCGCCTGCGGCTGCGATCGTGTCTGTCTCGC
TGTCAACGCGCGCAGCAACTCCGAGGCCCCCGGTTTTGGTACTGAGTTTG
GCTTTTTTCTCTCGGGGATGTAGTCCAAGTAGGGCAGGCGTCAACCAGCC
GAGCAAGCGCTAATAAAACGACAAGACGAGACCCCTCGACAACAACGCAT
GTCTAAGAAAATCGGACCGGAAAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11050:791..1216+

>mRNA_H-canaliculatus_F_contig11050.960.1 ID=mRNA_H-canaliculatus_F_contig11050.960.1|Name=mRNA_H-canaliculatus_F_contig11050.960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11050:791..1216+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACATTGCTAGGTCGACCCGGAACACACCATCGACATTCACAATCGA
AATTTATCGCCATGCTCAATCCGAGCGCAACGAGCGCCCGCTGCCCCGTC
GAATCGGGTTGCAAGGGACCTTCGTTGTCGCCCTGAATCTGACTTACGAC
GCACGTTCTCTTGCCACCTGGAACCGGTCTCAACTCAACCGCCTCCTGTC
TGCGCCTGCGGCTGCGATCGTGTCTGTCTCGCTGTCAACGCGCGCAGCAA
CTCCGAGGCCCCCGGTTTTGGTACTGAGTTTGGCTTTTTTCTCTCGGGGA
TGTAGTCCAAGTAGGGCAGGCGTCAACCAGCCGAGCAAGCGCTAAATGAA
CATTGCTAGGTCGACCCGGAACACACCATCGACATTCACAATCGAAATTT
ATCGCCATGCTCAATCCGAGCGCAACGAGCGCCCGCTGCCCCGTCGAATC
GGGTTGCAAGGGACCTTCGTTGTCGCCCTGAATCTGACTTACGACGCACG
TTCTCTTGCCACCTGGAACCGGTCTCAACTCAACCGCCTCCTGTCTGCGC
CTGCGGCTGCGATCGTGTCTGTCTCGCTGTCAACGCGCGCAGCAACTCCG
AGGCCCCCGGTTTTGGTACTGAGTTTGGCTTTTTTCTCTCGGGGATGTAG
TCCAAGTAGGGCAGGCGTCAACCAGCCGAGCAAGCGCTAA
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