mRNA_H-canaliculatus_F_contig1105.957.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1105.957.1
Unique NamemRNA_H-canaliculatus_F_contig1105.957.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D7G385_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G385_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 4.910e-138
Identity = 300/584 (51.37%), Postives = 355/584 (60.79%), Query Frame = 1
Query:    1 LAASKMFPSCPRPCPSGVVLLLSVKSGDAARTKALLRGC-----SGPDGPGLLHPDDTRDARGCTALHLAAMHGRSEIARVLLEAGASTESVVAAGENEGXXXXXXXXXXXXXXXXXXXXXXXXXTGAEDLVDRATCLHAXXXXXXXXXXXXXXXXXAKLESRAVSGQTPLRWALSMGRAGAAA-ALLEAGADPDAPDRRGACCLHAVAALKPEDXXXXXXXXGMVDKLPSSSSPASMAQLLLSAGATPNLGRGGERLHFPHAG------------------GPLSEGAGVT--GGVLEGSGGARRGVSVGETPLHLAARESSVEVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVS---PWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPPHR-WLPPAKRERILGE-GVISGGKREEQSGRGALHEVVGRLFEVTGDESVLRLVVGWL 1659
            +AAS+ FPSC R C +GVVLLLSV+SGDAA+T+ALLR       S  D    LHPD TRDARG T+LH+A++H RSEIAR+L+ AGASTESVV +G NEG                         T AED+VDRA     XXXXXXXXXXXXXXXXX                          A ALLEAGADPDAPDRRGACCLH VAALK E+                SS P  MAQLLLSAGA PNLGR   R    H G                  G  S  AG    GG+  GSG      S  E+PLH+AARES+V VA++LL HGADPNAKT   EGGMSPLH AA+       R +VR+LL AGAD+  VSADGLT+PLKLACLNA V CV+ELL  GADD +CVPR   P     S LPS+S   P CP S  P +  +AA      N+P L GLVGSR+P S+RDAADCE IV ML +APADR WRRRGWLVM+Y+R TA  +     + +VPP + W+P AKR+R++G+   ++  +  ++SG     +VVGRLFE  GD+SV+R V+ WL
Sbjct:    1 MAASEPFPSCSRACSAGVVLLLSVRSGDAAKTRALLRRLPSSENSSDDRVPPLHPDATRDARGHTSLHVASIHDRSEIARLLIAAGASTESVVTSGANEGLTPLRLAAERGHLLTVRALLEAGADTTAEDVVDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEALLEAGADPDAPDRRGACCLHTVAALKSEEDGSS----AFAGTGEGSSLPGDMAQLLLSAGANPNLGRAAGRAGRIHPGRTPSSTALTLGSINQSGSGDNSSAAGAHDGGGLWSGSGSES---SASESPLHVAARESNVRVAELLLLHGADPNAKTPMREGGMSPLHCAAS-------RPIVRMLLAAGADISVVSADGLTSPLKLACLNAAVGCVKELLSWGADDLSCVPRSTPPSTLLLSSLPSISETAPPCPSS-VPLSEASAAQRI---NVPRLGGLVGSRVPASVRDAADCEEIVRMLCQAPADRAWRRRGWLVMLYARTTAAVAXXXXLREQVPPQQQWVPSAKRKRVVGKKSAVAENETSKESGAVKFRDVVGRLFEAQGDQSVVRRVIEWL 566          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.410e-12
Identity = 86/262 (32.82%), Postives = 121/262 (46.18%), Query Frame = 1
Query:  898 VAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRL---LLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDA---ADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPPHRWLPPAKRERILGEGVISGGKREEQSGRGALH--EVVGRLFEVTGDESVLRLVVGWL 1659
            V ++LL  G   NA+T  +    +PLHFA      +RR A +     LL+ GA+ +A   D   TPL +AC+++ V  VE LLR GAD+ TC                                      ++DN      ++G      + D    AD + I  ML +APADR+WRRRGWLV+  S  T V    A++  RV  +R   PAK  R+ GE +  GG  EE   +  +    +VG L  +  D  + RLVVG+L
Sbjct:  295 VVRLLLEAGGGVNAETGRDFLRWTPLHFAV-----ERRIASIDTTLALLEGGANTNA-HGDHSGTPLHVACMHSNVAAVELLLRWGADE-TC--------------------------------------SNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQ--IANKGSRV--NRNSCPAKVARVSGEDL--GGDEEEAENQMTVDWGGLVGSLLGLEAD-GLFRLVVGFL 504          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 7.240e-11
Identity = 79/259 (30.50%), Postives = 111/259 (42.86%), Query Frame = 1
Query:  895 EVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAV----ASAAASEQGRVPPHRWLPPAKRERILGEGVISGGKREEQSGRGALHEVVGRLFEVTGDESVLRLVVGWL 1659
            +  +VLL  GAD N K  T +   +PLH A            +  LL+ GA+++A +A G  TPL +AC       VE LLR GAD+                                      P    D    + G++     D     AD + I  ML +APADR+WRRRGWLV+  S  T V     S+++S   R+  +     AK  R+ G+G     +  E      L ++VGRL  +   E + RLVVG+L
Sbjct:  298 DAVRVLLGAGADVNVK-GTNDSCATPLHLAVNRWMTST--GTICALLEGGANINARTA-GDDTPLHIACTRLRGSVVELLLRWGADE------------------------------------KLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNS----AKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEA-EGLFRLVVGFL 511          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.350e-10
Identity = 67/213 (31.46%), Postives = 87/213 (40.85%), Query Frame = 1
Query:  856 ETPLHLAARESSVEVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLT-TPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPP 1491
            E+PLH A+R    +V   L+  GA    +    +   +PL  AA  G+       +  LL +GA VDA   DG+  + L  AC+     CV ELLR GAD+                                        T  D   +    V   + +SL  A D   I  MLR+APADR WRRRGWLVM+ +R    A    S   R PP
Sbjct:   37 ESPLHAASRAGKPDVIACLVGAGAHTEVRDRNND---TPLLLAAWLGH----ATAIAKLLASGARVDA---DGIPRSALHCACMQGHAACVSELLRGGADE----------------------------------------TVEDEDGNSPAQVIGTMSESLERAEDIVLIREMLRRAPADRAWRRRGWLVMLRNRDCVAAGLLPS--ARPPP 197          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.390e-10
Identity = 87/277 (31.41%), Postives = 111/277 (40.07%), Query Frame = 1
Query:  853 GETPLHLAAR-----ESSVEVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPPHRWLP---PAKRERILGEGVISGGKREEQSGRGALHEVVGRLFEVTGDESVLRLVVGWL 1659
            G T LH AA          +  +VLL  GAD +AKT+ +    +PLH A            +R LL+ GADV+    +   TPL  AC  + V  VE LLR GAD+                                  G   PA    ++    G VGS   D     AD + I  ML +APADR+WRRR WLV+  S  T V  A  +  G              K  R  GE    G +  E      L  +V RL  +  D  + RLVVG+L
Sbjct:  277 GYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPST--GTIRALLEGGADVNVRDIED-RTPLHEACTYSSVAAVELLLRWGADEKL-----------------------------TDDGDVTPA----DMIGTSGDVGSDHGDI---EADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEAD-GLFRLVVGFL 513          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.270e-9
Identity = 130/456 (28.51%), Postives = 173/456 (37.94%), Query Frame = 1
Query:  160 RDARGCTALHLAAMHGRSEIARVLLEAG-ASTESVVAAGENEGXXXXXXXXXXXXXXXXXXXXXXXXXTGAE----DLVDRATCLHAXXXXXXXXXXXXXXXXXAKLESRAVSGQTPLRWALSMGRAGAAAALL-EAGADPDAPDRRGACCLHAVAALKPEDXXXXXXXXGMVDKLPSSSSPASMAQLLLSAGATPNLGR-GGERLHFPHAGGPLSEG-AGVTGGVLEGSGGARRGVSVGETPLHLAARESSVEVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLAC--LNAGVV-CVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAA-----PATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQG 1479
            R  RG T L  AA+ G  ++   LL +G AS  +VV+                                GA+    D  D    LH                  A   SR +SG+TPL  A + G     + LL  A  D DA D RG   L                         S     S  + LL AGA  NL   GG  L        +S+G  GV   ++E  G  R   + G T LH A    +V+V   LL  GAD NAK      G +PL        D+   AVV LL + G +V+  +  GL+  L L C  L+ G+   V+ LLR GA +       + P     S +  V+     +R     G+A       AT HD+L                   + +    +L +APADRTWRRR WLVM+ +RA     A +S  G
Sbjct:   65 RGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLII------AGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVA----------------------SEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHARGAQAVDV---LLDAGADVNAKACPALHGFTPLSVCVM---DNSCEAVVALLKRGG-NVNDTNCGGLSA-LHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTP-----SDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSL-----------------TKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAPSSGSG 462          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.250e-8
Identity = 84/263 (31.94%), Postives = 110/263 (41.83%), Query Frame = 1
Query:  895 EVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRA---VVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAV-----ASAAASEQGRVPPHRWLPPAKRERILGEGVISGGKREEQSGRGALHEVVGRLFEVTGDESVLRLVVGWL 1659
            +  +VLL  G D N  T+T+    +PLH A      D R A    +R LL+ GADVD+ +     TPL +AC +A V  VE LLR GAD+     R                                PA        +R      L D   DA D + I  ML +APADR+WRRRGWLV+     T V     +S+  S  G          AK   + GE    G +  E      L ++V  L  +  D S+ RLVV +L
Sbjct:   61 DAVRVLLGAGVDVNVNTTTDSC-FTPLHVAV-----DGRIASDGTIRALLE-GADVDSRARHD-QTPLHIACKHASVSGVELLLRWGADEQLTNNR-----------------------------GDMPADV------IRARQQGDLDDEEHDA-DNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNGNS--------AKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEAD-SLFRLVVAFL 270          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.270e-8
Identity = 75/260 (28.85%), Postives = 110/260 (42.31%), Query Frame = 1
Query:  895 EVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRA---VVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPPHRWLPPAKRERILGEGVISGGKREEQSGRGALH--EVVGRLFEVTGDESVLRLVVGWL 1659
            +  +VLL  GAD +AKT+ +    +PLH+A      +RR A    +R LL+ GA+V+A       TPL +AC  + V  VE LL  GAD+               + L   +P             A   +  +  P +    G          AD   I  ML +APADR+W RR WLV+  S  T V  +  S    +           E +       GG  +E   +  ++  ++V RL  +  D  + RLVVG+L
Sbjct:   39 DTVRVLLEAGADVDAKTTGDGNCATPLHYAV-----NRRIAPIGAIRALLEGGANVNARDVFD-QTPLHVACARSSVNGVEFLLHWGADEKL-------------TDLDGETP-----------AGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEAD-VLFRLVVGFL 267          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: A0A3D3P0W7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D3P0W7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 6.770e-8
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  841 GVSVGETPLHLAARESSVEVAQVLLRHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGAD 1152
            G  VG T L  AAR +SV+V ++LL  G    A+T T++ G S LH+A A   D  + A VR+L+ AGAD++A    G TTPL  A     +  V ELL+RGAD
Sbjct:  136 GNQVGYTALMGAARGASVDVLRLLLSRGG--RART-TDKRGCSALHWAVAQSGDSSQTACVRVLIDAGADINARDEGG-TTPLMNAAWFGCMDAVRELLQRGAD 235          
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Match: D7FY50_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY50_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.200e-7
Identity = 49/163 (30.06%), Postives = 70/163 (42.94%), Query Frame = 1
Query:  952 EEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVSADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPSVSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETIVGMLRKAPADRTWRRRGWLVMMYSR 1440
            ++ G+S L  AA  G+       + +L+ AGADVD  + + + TPL LAC++    CV  LLR  AD+                                          +++L     +VG  +    RD    E I  ML +APADR WRRRGWL M+ +R
Sbjct:  234 DDRGVSALGIAARKGHAK----ALDVLIDAGADVDEANQE-MDTPLHLACMHLQPACVRTLLRHNADE---------------------------------------VFRNEDLAFPDDVVGHAVAGDKRDEEVVEWIYEMLARAPADRVWRRRGWLAMLRAR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1105.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G385_ECTSI4.910e-13851.37Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
D8LB27_ECTSI7.410e-1232.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQN0_ECTSI7.240e-1130.50Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G0H9_ECTSI6.350e-1031.46Ankyrin repeat domain protein n=2 Tax=Ectocarpus T... [more]
D8LD22_ECTSI7.390e-1031.41MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5K1F4_9PHAE2.270e-928.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXF0_9PHAE2.250e-831.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K9_9PHAE5.270e-828.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3D3P0W7_9BACT6.770e-845.19Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
D7FY50_ECTSI2.200e-730.06Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1105contigH-canaliculatus_F_contig1105:618..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.3
Seed ortholog evalue1.7e-115
Seed eggNOG ortholog2880.D7G385
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-03_004920.1
Exons1
Model size1662
Cds size1647
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.3401763-CDS-H-canaliculatus_F_contig1105:617..22641622928780.3401763-CDS-H-canaliculatus_F_contig1105:617..2264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 618..2264 -
1696845561.448066-CDS-H-canaliculatus_F_contig1105:617..22641696845561.448066-CDS-H-canaliculatus_F_contig1105:617..2264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 618..2264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.4127426-UTR-H-canaliculatus_F_contig1105:2264..22791622928780.4127426-UTR-H-canaliculatus_F_contig1105:2264..2279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1105 2265..2279 -
1696845561.4576986-UTR-H-canaliculatus_F_contig1105:2264..22791696845561.4576986-UTR-H-canaliculatus_F_contig1105:2264..2279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1105 2265..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1105.957.1prot_H-canaliculatus_F_contig1105.957.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1105 618..2264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1105.957.1

>prot_H-canaliculatus_F_contig1105.957.1 ID=prot_H-canaliculatus_F_contig1105.957.1|Name=mRNA_H-canaliculatus_F_contig1105.957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=549bp
MFPSCPRPCPSGVVLLLSVKSGDAARTKALLRGCSGPDGPGLLHPDDTRD
ARGCTALHLAAMHGRSEIARVLLEAGASTESVVAAGENEGLTPLRLAAER
GHLSTVRALLEAGAETGAEDLVDRATCLHAAAEAGHTEVVVELVRGGAKL
ESRAVSGQTPLRWALSMGRAGAAAALLEAGADPDAPDRRGACCLHAVAAL
KPEDDSSGGTGGGMVDKLPSSSSPASMAQLLLSAGATPNLGRGGERLHFP
HAGGPLSEGAGVTGGVLEGSGGARRGVSVGETPLHLAARESSVEVAQVLL
RHGADPNAKTSTEEGGMSPLHFAAAPGNDDRRRAVVRLLLQAGADVDAVS
ADGLTTPLKLACLNAGVVCVEELLRRGADDPTCVPRCMRPPAPPHSPLPS
VSPWCPRSRFPAAFGAAAPATAHDNLPHLRGLVGSRLPDSLRDAADCETI
VGMLRKAPADRTWRRRGWLVMMYSRATAVASAAASEQGRVPPHRWLPPAK
RERILGEGVISGGKREEQSGRGALHEVVGRLFEVTGDESVLRLVVGWL*
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mRNA from alignment at H-canaliculatus_F_contig1105:618..2279-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1105.957.1 ID=mRNA_H-canaliculatus_F_contig1105.957.1|Name=mRNA_H-canaliculatus_F_contig1105.957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1105:618..2279- (Hapterophycus canaliculatus Oshoro5f female)
TTGGCCGCTTCCAAAATGTTTCCGTCTTGCCCGAGACCATGCCCGTCGGG GGTAGTCCTCCTCCTGTCGGTCAAGTCAGGCGACGCCGCTCGAACCAAGG CGCTGCTACGCGGGTGCTCCGGACCCGACGGCCCCGGCCTCCTCCACCCC GACGACACCCGAGACGCTCGCGGTTGCACCGCGCTACACCTCGCCGCGAT GCACGGCCGCTCTGAGATCGCCCGCGTGCTCCTCGAGGCCGGCGCCTCCA CCGAGTCCGTCGTGGCCGCCGGCGAAAACGAGGGCTTGACGCCGCTCCGG CTGGCGGCGGAGCGTGGCCACCTCTCGACTGTCCGCGCCCTGCTGGAGGC CGGGGCGGAAACGGGTGCGGAGGACCTGGTCGACCGTGCTACGTGCCTGC ACGCCGCCGCGGAGGCGGGCCACACGGAAGTCGTGGTGGAGCTGGTGCGA GGGGGTGCGAAGCTCGAGTCAAGAGCCGTGTCCGGTCAGACCCCACTGAG GTGGGCCCTCAGCATGGGCCGGGCAGGCGCCGCGGCCGCGCTCCTGGAGG CCGGCGCGGACCCGGATGCTCCCGATAGGCGCGGCGCTTGCTGTCTGCAC GCCGTGGCAGCCCTGAAGCCCGAGGATGATTCTTCTGGTGGGACGGGTGG GGGGATGGTCGACAAGCTGCCGTCATCGTCGTCGCCGGCTTCCATGGCAC AGCTTTTGCTGTCTGCAGGGGCGACACCGAACCTCGGGCGCGGCGGAGAG CGCCTCCATTTTCCGCACGCGGGAGGGCCGCTCTCAGAAGGCGCCGGTGT CACGGGCGGTGTTCTTGAGGGGAGCGGGGGGGCCCGCAGAGGTGTCAGCG TCGGTGAGACTCCGCTCCACCTGGCCGCTCGAGAATCGTCTGTCGAGGTG GCGCAGGTGCTCCTGCGCCACGGCGCCGACCCAAACGCCAAGACCTCGAC GGAGGAAGGAGGCATGTCTCCTTTGCATTTCGCGGCGGCGCCGGGGAACG ACGATCGGCGCAGGGCCGTCGTCCGGCTGCTGCTGCAGGCCGGCGCAGAC GTCGATGCCGTGTCCGCGGACGGGCTGACGACCCCTCTCAAGCTAGCCTG CCTCAACGCGGGGGTGGTGTGCGTGGAAGAGCTCCTGCGGCGGGGTGCCG ACGATCCTACGTGCGTCCCGCGTTGTATGCGACCACCTGCGCCGCCGCAC TCCCCGTTGCCGTCCGTTTCGCCGTGGTGCCCCCGTTCGCGTTTCCCGGC TGCTTTTGGTGCTGCCGCTCCCGCCACCGCCCACGACAACCTGCCGCACC TCCGCGGTCTAGTCGGCTCGCGTTTGCCCGATTCCCTCAGGGATGCGGCG GACTGTGAGACGATTGTTGGGATGCTGCGCAAGGCGCCCGCCGACCGCAC CTGGAGGCGCCGAGGCTGGTTGGTGATGATGTACTCGCGGGCGACCGCGG TCGCCTCTGCCGCCGCTTCTGAACAGGGGCGGGTGCCGCCACACCGGTGG CTACCCCCGGCGAAGCGCGAACGAATCCTAGGCGAGGGGGTGATCTCGGG GGGCAAACGAGAGGAGCAATCCGGGCGAGGGGCACTGCACGAAGTTGTGG GTCGCCTGTTCGAAGTAACGGGCGACGAGTCCGTGCTCCGCCTCGTCGTG GGGTGGCTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1105:618..2279-

>mRNA_H-canaliculatus_F_contig1105.957.1 ID=mRNA_H-canaliculatus_F_contig1105.957.1|Name=mRNA_H-canaliculatus_F_contig1105.957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1105:618..2279- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTCCGTCTTGCCCGAGACCATGCCCGTCGGGGGTAGTCCTCCTCCT
GTCGGTCAAGTCAGGCGACGCCGCTCGAACCAAGGCGCTGCTACGCGGGT
GCTCCGGACCCGACGGCCCCGGCCTCCTCCACCCCGACGACACCCGAGAC
GCTCGCGGTTGCACCGCGCTACACCTCGCCGCGATGCACGGCCGCTCTGA
GATCGCCCGCGTGCTCCTCGAGGCCGGCGCCTCCACCGAGTCCGTCGTGG
CCGCCGGCGAAAACGAGGGCTTGACGCCGCTCCGGCTGGCGGCGGAGCGT
GGCCACCTCTCGACTGTCCGCGCCCTGCTGGAGGCCGGGGCGGAAACGGG
TGCGGAGGACCTGGTCGACCGTGCTACGTGCCTGCACGCCGCCGCGGAGG
CGGGCCACACGGAAGTCGTGGTGGAGCTGGTGCGAGGGGGTGCGAAGCTC
GAGTCAAGAGCCGTGTCCGGTCAGACCCCACTGAGGTGGGCCCTCAGCAT
GGGCCGGGCAGGCGCCGCGGCCGCGCTCCTGGAGGCCGGCGCGGACCCGG
ATGCTCCCGATAGGCGCGGCGCTTGCTGTCTGCACGCCGTGGCAGCCCTG
AAGCCCGAGGATGATTCTTCTGGTGGGACGGGTGGGGGGATGGTCGACAA
GCTGCCGTCATCGTCGTCGCCGGCTTCCATGGCACAGCTTTTGCTGTCTG
CAGGGGCGACACCGAACCTCGGGCGCGGCGGAGAGCGCCTCCATTTTCCG
CACGCGGGAGGGCCGCTCTCAGAAGGCGCCGGTGTCACGGGCGGTGTTCT
TGAGGGGAGCGGGGGGGCCCGCAGAGGTGTCAGCGTCGGTGAGACTCCGC
TCCACCTGGCCGCTCGAGAATCGTCTGTCGAGGTGGCGCAGGTGCTCCTG
CGCCACGGCGCCGACCCAAACGCCAAGACCTCGACGGAGGAAGGAGGCAT
GTCTCCTTTGCATTTCGCGGCGGCGCCGGGGAACGACGATCGGCGCAGGG
CCGTCGTCCGGCTGCTGCTGCAGGCCGGCGCAGACGTCGATGCCGTGTCC
GCGGACGGGCTGACGACCCCTCTCAAGCTAGCCTGCCTCAACGCGGGGGT
GGTGTGCGTGGAAGAGCTCCTGCGGCGGGGTGCCGACGATCCTACGTGCG
TCCCGCGTTGTATGCGACCACCTGCGCCGCCGCACTCCCCGTTGCCGTCC
GTTTCGCCGTGGTGCCCCCGTTCGCGTTTCCCGGCTGCTTTTGGTGCTGC
CGCTCCCGCCACCGCCCACGACAACCTGCCGCACCTCCGCGGTCTAGTCG
GCTCGCGTTTGCCCGATTCCCTCAGGGATGCGGCGGACTGTGAGACGATT
GTTGGGATGCTGCGCAAGGCGCCCGCCGACCGCACCTGGAGGCGCCGAGG
CTGGTTGGTGATGATGTACTCGCGGGCGACCGCGGTCGCCTCTGCCGCCG
CTTCTGAACAGGGGCGGGTGCCGCCACACCGGTGGCTACCCCCGGCGAAG
CGCGAACGAATCCTAGGCGAGGGGGTGATCTCGGGGGGCAAACGAGAGGA
GCAATCCGGGCGAGGGGCACTGCACGAAGTTGTGGGTCGCCTGTTCGAAG
TAACGGGCGACGAGTCCGTGCTCCGCCTCGTCGTGGGGTGGCTCTGAATG
TTTCCGTCTTGCCCGAGACCATGCCCGTCGGGGGTAGTCCTCCTCCTGTC
GGTCAAGTCAGGCGACGCCGCTCGAACCAAGGCGCTGCTACGCGGGTGCT
CCGGACCCGACGGCCCCGGCCTCCTCCACCCCGACGACACCCGAGACGCT
CGCGGTTGCACCGCGCTACACCTCGCCGCGATGCACGGCCGCTCTGAGAT
CGCCCGCGTGCTCCTCGAGGCCGGCGCCTCCACCGAGTCCGTCGTGGCCG
CCGGCGAAAACGAGGGCTTGACGCCGCTCCGGCTGGCGGCGGAGCGTGGC
CACCTCTCGACTGTCCGCGCCCTGCTGGAGGCCGGGGCGGAAACGGGTGC
GGAGGACCTGGTCGACCGTGCTACGTGCCTGCACGCCGCCGCGGAGGCGG
GCCACACGGAAGTCGTGGTGGAGCTGGTGCGAGGGGGTGCGAAGCTCGAG
TCAAGAGCCGTGTCCGGTCAGACCCCACTGAGGTGGGCCCTCAGCATGGG
CCGGGCAGGCGCCGCGGCCGCGCTCCTGGAGGCCGGCGCGGACCCGGATG
CTCCCGATAGGCGCGGCGCTTGCTGTCTGCACGCCGTGGCAGCCCTGAAG
CCCGAGGATGATTCTTCTGGTGGGACGGGTGGGGGGATGGTCGACAAGCT
GCCGTCATCGTCGTCGCCGGCTTCCATGGCACAGCTTTTGCTGTCTGCAG
GGGCGACACCGAACCTCGGGCGCGGCGGAGAGCGCCTCCATTTTCCGCAC
GCGGGAGGGCCGCTCTCAGAAGGCGCCGGTGTCACGGGCGGTGTTCTTGA
GGGGAGCGGGGGGGCCCGCAGAGGTGTCAGCGTCGGTGAGACTCCGCTCC
ACCTGGCCGCTCGAGAATCGTCTGTCGAGGTGGCGCAGGTGCTCCTGCGC
CACGGCGCCGACCCAAACGCCAAGACCTCGACGGAGGAAGGAGGCATGTC
TCCTTTGCATTTCGCGGCGGCGCCGGGGAACGACGATCGGCGCAGGGCCG
TCGTCCGGCTGCTGCTGCAGGCCGGCGCAGACGTCGATGCCGTGTCCGCG
GACGGGCTGACGACCCCTCTCAAGCTAGCCTGCCTCAACGCGGGGGTGGT
GTGCGTGGAAGAGCTCCTGCGGCGGGGTGCCGACGATCCTACGTGCGTCC
CGCGTTGTATGCGACCACCTGCGCCGCCGCACTCCCCGTTGCCGTCCGTT
TCGCCGTGGTGCCCCCGTTCGCGTTTCCCGGCTGCTTTTGGTGCTGCCGC
TCCCGCCACCGCCCACGACAACCTGCCGCACCTCCGCGGTCTAGTCGGCT
CGCGTTTGCCCGATTCCCTCAGGGATGCGGCGGACTGTGAGACGATTGTT
GGGATGCTGCGCAAGGCGCCCGCCGACCGCACCTGGAGGCGCCGAGGCTG
GTTGGTGATGATGTACTCGCGGGCGACCGCGGTCGCCTCTGCCGCCGCTT
CTGAACAGGGGCGGGTGCCGCCACACCGGTGGCTACCCCCGGCGAAGCGC
GAACGAATCCTAGGCGAGGGGGTGATCTCGGGGGGCAAACGAGAGGAGCA
ATCCGGGCGAGGGGCACTGCACGAAGTTGTGGGTCGCCTGTTCGAAGTAA
CGGGCGACGAGTCCGTGCTCCGCCTCGTCGTGGGGTGGCTCTGA
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