mRNA_H-canaliculatus_F_contig1104.954.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1104.954.1
Unique NamemRNA_H-canaliculatus_F_contig1104.954.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1104.954.1 vs. uniprot
Match: D7G4M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.130e-22
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 TGAEDGDSSHAFEDSSDP------MPGMTGDFEQGRIVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERAARLASGASSV 225
            +G  DG+S     DS DP        G +GDFE+GR VPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDER+ R+ S +SSV
Sbjct:   47 SGNSDGNSDAGAVDSMDPDMAEGLWRGSSGDFEKGRPVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERS-RMVSESSSV 126
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BLAST of mRNA_H-canaliculatus_F_contig1104.954.1 vs. uniprot
Match: A0A6H5JYV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.940e-22
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 TGAEDGDSSHAFEDSSDP------MPGMTGDFEQGRIVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERAARLASGASSV 225
            +G  DGDS+    DS D       + G +GDFE GR VPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDER+ R+ S +SSV
Sbjct:   13 SGNSDGDSNAGDVDSMDLDMAGGLLRGSSGDFENGRPVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERS-RMVSESSSV 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1104.954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4M6_ECTSI3.130e-2265.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV7_9PHAE4.940e-2265.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1104contigH-canaliculatus_F_contig1104:26413..28852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size463
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1104.954.1prot_H-canaliculatus_F_contig1104.954.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1104 26415..28852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.3761642-CDS-H-canaliculatus_F_contig1104:26414..266901622928779.3761642-CDS-H-canaliculatus_F_contig1104:26414..26690Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 26415..26690 -
1696845561.123987-CDS-H-canaliculatus_F_contig1104:26414..266901696845561.123987-CDS-H-canaliculatus_F_contig1104:26414..26690Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 26415..26690 -
1622928779.391952-CDS-H-canaliculatus_F_contig1104:27836..279381622928779.391952-CDS-H-canaliculatus_F_contig1104:27836..27938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 27837..27938 -
1696845561.132741-CDS-H-canaliculatus_F_contig1104:27836..279381696845561.132741-CDS-H-canaliculatus_F_contig1104:27836..27938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 27837..27938 -
1622928779.4030821-CDS-H-canaliculatus_F_contig1104:28771..288521622928779.4030821-CDS-H-canaliculatus_F_contig1104:28771..28852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 28772..28852 -
1696845561.1507626-CDS-H-canaliculatus_F_contig1104:28771..288521696845561.1507626-CDS-H-canaliculatus_F_contig1104:28771..28852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 28772..28852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1104.954.1

>prot_H-canaliculatus_F_contig1104.954.1 ID=prot_H-canaliculatus_F_contig1104.954.1|Name=mRNA_H-canaliculatus_F_contig1104.954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
TGAEDGDSSHAFEDSSDPMPGMTGDFEQGRIVPPGFWRRHSKGRLSWSDD
YQGGCLAEYYEDERAARLASGASSVDAEASGQQQQQQQQHQAGPSASKVI
TAATAVDSSRNRCCIGCRQHASHREGGEITAATTCTSSTGAEMGEADGCE
RCS
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mRNA from alignment at H-canaliculatus_F_contig1104:26413..28852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1104.954.1 ID=mRNA_H-canaliculatus_F_contig1104.954.1|Name=mRNA_H-canaliculatus_F_contig1104.954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1104:26413..28852- (Hapterophycus canaliculatus Oshoro5f female)
ACAGGAGCCGAGGATGGGGATAGTAGTCATGCTTTTGAAGATAGTAGTGA
CCCCATGCCTGGGATGACGGGGGATTTTGAGGTGAGGTGCGGGGCGGTGC
CTGGTCGGGTGCATAACGGTGGCGGGTTTGTATGTTTTCATGGGGGCGGT
TTGCCGCATATTATGTGAGGTCAGGCGAAAGAGGGCGTGTCTAGCTTAAA
TATAGAGGGAAGGAGTGTAGAACCTTTACAACCTCCTGTGAAACTGCACA
CCGCGTGTGAGCAATCACGACAATCACGACAATCACGACAATCACGACAT
CTGACTGAACGAAGGCACAAGGTCAAGGTTGGGATCACGTGCTCTAGGAT
AGGAACAGCCGTTACTTTCCGTACACAATCGATCAAGCACTGACCGGTCA
CTTCAGTGCTCCATTTTCCGGAGCGAGATTTATCTTTTGGGCACAGTCGG
GTGCTCACGGCCCGACATGTTTGTTTTGCCTGGGTTGTAATCGAAGGCCA
GGTAAGGCTTGGCGTTGTTTGGCGGCTGATGGCGGAAGCAAGAGAGAAAG
AAAGCTTGCAGCTTCCGTCGATTCCCCTCAAAAGTAGGAATGTCGAAAGT
GGACGAAAACTGTCTCCATGCCGTACACTGCATTGTGGCTGGGTTTGGTT
TCGATCGTCCCTCTCCTCAAGGGAGGATCGCTACGCACAGCATGTGATCC
CCAGTATTGTCCTCAAACATGGACGATGTTTAGGGGTGTTTAGGGATGTT
TAGGGAGGTTGAAAGAAGGAAAAGGGAGGGGTTGAGACTCTCGAAGCTCA
GGCCGCCACTTTCACCAATTCGACTGGAATATATCTCGCCATTGCTCACG
GTGCCAACACTGGCCGCAACCTCTTGAACACTTTTGGCTCTGCTTGTCCA
TCTTCGGCTCTCAGCAAGGGAGAATCGTTCCTCCAGGATTCTGGCGACGG
CATTCTAAGGGTCGCCTCAGCTGGAGCGACGACTACCAGGGTGGTTGCCT
CGCGGAATACTACGAGGTAAAGTGTACAGCAGTATACATTGTGCAGTGTA
GTTTGCAGCTTGCATCAACAGGAAAGCAGTAATTCAACAACGACAGCTCT
TGATAGCGCGGACGCCCAACCATGTGGTGAAGTCGTCAACAACAGCATTA
TCACCGGCAGCAACAGCAGCAGCGGCAGCGGCACCATCCAAAAGAAGAGG
AACAGGAAGAGTAGGAGCACCAGCAGTCGAAGTAGCTGCCGCTTCGAGTG
TAAGCAATCTGCCCTACCGTATGTACCAGTATGTACATCCGGTCCCATTT
CGCGCGTGATTTTACGTTTCACTTGGGGTGTGCGCACGGTGATCACCTCC
TGCGGGTTGTTCCCCTACAGTACTGTACGCGATAACCACTCGGAAAAAAG
CGATGGAACCCGTCCCGACGGAGAAGCAAAGAACATCCGACACTTCGAAA
CTCGAGAGTCTGCGGACAAGGTTCAGCCCAGTATCACAATCATGTATGGT
GTGTAGTACTGACTCTTGCACCAGAAGCCTCTTCGAAACTGTTACAGCCT
CCACTCCAACTTGTCAAAACTACCTCGTCAATATCAAAGCTATTCCGATG
GTGATCGGTTTTGAACTTCCACGACCTCATAACTTCGAGGTGTTGGTCGC
TGAAAGTTTGTGCTTATCCCAAGTCGGGCGTCGAAATCTGAGCACCGAAC
GCGCTCGCGTGGTGGTGTGGTGACGTCATGTCGACCTTGCCCTTTTTGAA
GAAAATAGTTTGTTTCGCTGTGATACTCTCTAGTCCTCTTCACGGAGGCC
TCCATGGGCCCAGCTCACGCTTCTCCTCATATTTGTCGAACGTGTTACCG
ACACCTGTTACACGGTGCGGTCAACGGTAATTTGCCTGCCTGCCTGCCTG
ATGGCTTGAACCGGATGTTGGTAAGTCACGACGTCGTTATGTATGCCGTT
GCTTCGTACGAACTTGAATGAAGCTACGCTTAATGGCACGTGGTAGGTTT
TTCACCTCGACCGTTTTCTAGTCGCTTGCTGCGCTTCTCCAACGGTGTTG
TACGTGAGCGCCGACCAACGGCCACCTTCACATTCCGCTCGTGAGATTTT
CTGGCTGCTACATGTTCACCCTAATCGACACTCCGGCGGTCGCGACGGTA
ATTTGCTTTCAGGACGAGCGAGCAGCGCGACTGGCGTCGGGAGCGTCAAG
CGTGGACGCCGAGGCATCTGGCCAGCAGCAGCAGCAGCAGCAGCAGCATC
AGGCTGGTCCGTCCGCCTCGAAAGTGATCACGGCGGCAACCGCCGTCGAC
AGCAGCCGCAACCGCTGTTGCATTGGCTGTCGGCAGCATGCCTCGCATAG
AGAAGGGGGAGAAATCACGGCGGCGACGACATGCACGAGTTCGACCGGTG
CAGAGATGGGCGAAGCCGACGGCTGCGAGCGCTGCTCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1104:26413..28852-

>mRNA_H-canaliculatus_F_contig1104.954.1 ID=mRNA_H-canaliculatus_F_contig1104.954.1|Name=mRNA_H-canaliculatus_F_contig1104.954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1104:26413..28852- (Hapterophycus canaliculatus Oshoro5f female)
ACAGGAGCCGAGGATGGGGATAGTAGTCATGCTTTTGAAGATAGTAGTGA
CCCCATGCCTGGGATGACGGGGGATTTTGAGACAGGAGCCGAGGATGGGG
ATAGTAGTCATGCTTTTGAAGATAGTAGTGACCCCATGCCTGGGATGACG
GGGGATTTTGAGCAAGGGAGAATCGTTCCTCCAGGATTCTGGCGACGGCA
TTCTAAGGGTCGCCTCAGCTGGAGCGACGACTACCAGGGTGGTTGCCTCG
CGGAATACTACGAGCAAGGGAGAATCGTTCCTCCAGGATTCTGGCGACGG
CATTCTAAGGGTCGCCTCAGCTGGAGCGACGACTACCAGGGTGGTTGCCT
CGCGGAATACTACGAGGACGAGCGAGCAGCGCGACTGGCGTCGGGAGCGT
CAAGCGTGGACGCCGAGGCATCTGGCCAGCAGCAGCAGCAGCAGCAGCAG
CATCAGGCTGGTCCGTCCGCCTCGAAAGTGATCACGGCGGCAACCGCCGT
CGACAGCAGCCGCAACCGCTGTTGCATTGGCTGTCGGCAGCATGCCTCGC
ATAGAGAAGGGGGAGAAATCACGGCGGCGACGACATGCACGAGTTCGACC
GGTGCAGAGATGGGCGAAGCCGACGGCTGCGAGCGCTGCTCCGACGAGCG
AGCAGCGCGACTGGCGTCGGGAGCGTCAAGCGTGGACGCCGAGGCATCTG
GCCAGCAGCAGCAGCAGCAGCAGCAGCATCAGGCTGGTCCGTCCGCCTCG
AAAGTGATCACGGCGGCAACCGCCGTCGACAGCAGCCGCAACCGCTGTTG
CATTGGCTGTCGGCAGCATGCCTCGCATAGAGAAGGGGGAGAAATCACGG
CGGCGACGACATGCACGAGTTCGACCGGTGCAGAGATGGGCGAAGCCGAC
GGCTGCGAGCGCTGCTCC
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