mRNA_H-canaliculatus_F_contig1104.953.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1104.953.1
Unique NamemRNA_H-canaliculatus_F_contig1104.953.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1104.953.1 vs. uniprot
Match: D7G4M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.000e-23
Identity = 79/193 (40.93%), Postives = 94/193 (48.70%), Query Frame = 1 
Query:   28 DDDGDEVFHSALQLAVAGDCSDGEDPGDVEDVEATEDLTGIVVGCGARVVEHGTFYGTTR-------DASGDETHGGCIGQTGIWERGPAGGAAPSEDGCVPTSHERAQ---------------DTADALATSGPNDGNAAGTPNSAAGAGTWSPQWGWYVTMTPPQDQYPAQQNPIPGVKLPTPTASTESPD 540
            D+DGD VFHSALQL                 V+  +DL G+  GC A +V   TFYG  +       D+   E       +    + G  GGAA S  G  P  HE+++               DT  A      + G   GTP +    GTWSPQWGWYVTMTPPQDQYPAQQ PIPG K PTPTAS  + D
Sbjct:  201 DEDGD-VFHSALQL-----------------VDEDDDLGGLDGGCAA-LVRRDTFYGDVQIPPMRVLDSPSQEKMEDRNVRFSAAKGGSGGGAAASSLGGEPAKHEQSEGSGCXXXXXXXXXXGDTGVAA-----DSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASAAASD 369
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BLAST of mRNA_H-canaliculatus_F_contig1104.953.1 vs. uniprot
Match: A0A6H5JYV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.700e-20
Identity = 71/180 (39.44%), Postives = 85/180 (47.22%), Query Frame = 1 
Query:   43 EVFHSALQLAVAGDCSDGEDPGDVEDVEATEDLTGIVVGCGARVVEHGTFYGTTRDASGDETHGGCIGQTGIWERGPAGGAAPSEDGCVPTSHERAQDTA------------DALATSGPNDGNAAGTPNSAAGAGTWSPQWGWYVTMTPPQDQYPAQQNPIPGVKLPTPTASTESPDTP 546
            EVFHSALQLA              ED    +DL G+  GC A +V   TFYG  ++   D +      +  I              G  P  HE+++ +             D    +G   G   GTP +    GTWSPQWGWYVTMTPPQDQYP QQ PIPG K PTPTAS  + D P
Sbjct:  174 EVFHSALQLA--------------ED----DDLEGLDGGCAA-LVHRDTFYGDVQEKMEDRSV-----RVSIAGXXXXXXXXXXSLGGEPAKHEQSEGSGCRGXXXXXXXXGDTGVVAG--SGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPTQQFPIPGAKPPTPTASAAASDVP 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1104.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4M6_ECTSI3.000e-2340.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV7_9PHAE4.700e-2039.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1104contigH-canaliculatus_F_contig1104:23302..26303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size547
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1104.953.1prot_H-canaliculatus_F_contig1104.953.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1104 23303..26303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.9981198-CDS-H-canaliculatus_F_contig1104:23302..233861622928779.9981198-CDS-H-canaliculatus_F_contig1104:23302..23386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 23303..23386 -
1696845561.2856128-CDS-H-canaliculatus_F_contig1104:23302..233861696845561.2856128-CDS-H-canaliculatus_F_contig1104:23302..23386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 23303..23386 -
1622928780.0131164-CDS-H-canaliculatus_F_contig1104:23840..239681622928780.0131164-CDS-H-canaliculatus_F_contig1104:23840..23968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 23841..23968 -
1696845561.294388-CDS-H-canaliculatus_F_contig1104:23840..239681696845561.294388-CDS-H-canaliculatus_F_contig1104:23840..23968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 23841..23968 -
1622928780.0281143-CDS-H-canaliculatus_F_contig1104:24738..248651622928780.0281143-CDS-H-canaliculatus_F_contig1104:24738..24865Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 24739..24865 -
1696845561.3028696-CDS-H-canaliculatus_F_contig1104:24738..248651696845561.3028696-CDS-H-canaliculatus_F_contig1104:24738..24865Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 24739..24865 -
1622928780.045713-CDS-H-canaliculatus_F_contig1104:26096..263031622928780.045713-CDS-H-canaliculatus_F_contig1104:26096..26303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 26097..26303 -
1696845561.3121457-CDS-H-canaliculatus_F_contig1104:26096..263031696845561.3121457-CDS-H-canaliculatus_F_contig1104:26096..26303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1104 26097..26303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1104.953.1

>prot_H-canaliculatus_F_contig1104.953.1 ID=prot_H-canaliculatus_F_contig1104.953.1|Name=mRNA_H-canaliculatus_F_contig1104.953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=182bp
GGREGGDNDDDDGDEVFHSALQLAVAGDCSDGEDPGDVEDVEATEDLTGI
VVGCGARVVEHGTFYGTTRDASGDETHGGCIGQTGIWERGPAGGAAPSED
GCVPTSHERAQDTADALATSGPNDGNAAGTPNSAAGAGTWSPQWGWYVTM
TPPQDQYPAQQNPIPGVKLPTPTASTESPDTP
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mRNA from alignment at H-canaliculatus_F_contig1104:23302..26303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1104.953.1 ID=mRNA_H-canaliculatus_F_contig1104.953.1|Name=mRNA_H-canaliculatus_F_contig1104.953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1104:23302..26303- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAAGAGAAGGAGGCGACAACGACGACGACGACGGTGACGAAGTGTT
CCACAGTGCGCTTCAGCTGGCGGTAGCTGGAGACTGCAGCGATGGCGAGG
ACCCTGGTGATGTGGAGGACGTTGAGGCTACGGAGGACTTGACAGGGATT
GTCGTCGGGTGTGGTGCGCGGGTGGTGGAGCACGGCACGTTCTACGGAAC
CACGCGGGTGAGCGAAGCTTGTCGTCGCTGTCATCGCTGCTGGGGTTTCC
CTCGTTGCACGAATCATTTGGGGGACGGCGGATGGCCACGGACCGCGTCC
GTCAAACACGCGCGAAAGACGCGTGGAACACGAGTGGTCCAATCATCCAA
AGTGATGGATGATCTGCTAAGCCCAAGGTTGTTCGTTCCTCTCCCCTTCC
CCCGTCCTTGTTGTTTTGTCTTACGGGATGGTTATTAGCTTCGATAGTCT
ACGAACAGGAGCCAAAACAATGAATTGAAAGCCCCGTGCGACAGGACACG
GCAAGGGTGCTCAAACAGCTGGAAGTGCCGGTTCAGCGGGGCCAGACGAG
GCCGGGATAAAAGTAGTGGTGGAGGATGGAGATTTAAAAATATGTTTTTG
GACGCTGGTGACGCTGTGAAGTCGCGTTCCGCGGTGCTGCTTCCAATACT
CCTGTATTTGTCTACTTGTGTGTTTAGCCTGCTTCGCCCCTGCCTTTGTT
TATTTCCGATCCTAGGCTGGTGGAATTGCCACCGTCATGAGAGGTGATTG
CCACCGTCATGAAAGTAATTCGAGTCATCGGAGGCTTGTGACCTCCTCCT
CCTTCGAGAAGGAAACACGCTTCTACACCCCCCCCGGCTTGGTGTGCTCG
TAGAGCATGGCATCTTTGAGATACCCTTCCTCCCTTCCTTCCTTCCTTCC
TTCCGCGTTTGGCGGGCGGAGCTGGGAATGGTCATCCGATCCCCTTTCTC
GACCCCTACAGTTGCAGATTCTCCCTGCTATGCCTCCCATAGGGAATCTC
TCAGAGAGCGTAGGCCCTGGTTGGCGCATACGATGCTGGCGTCCTAGATT
CTTGACAATTCCTCGACTAGCGCCACAATTGGAAATGGGCGCGAGGCGAA
AGCACGGTAATGTTCATGTCGAGGATAGGAATAGGAATGGTCGAGGCCCA
TCGAAGTGGGTGGTGAGTGAGAGGTTCCGTCGTTTGAGTGCCCGCGTGAC
GGCTTGCTGTGTTCACAGCCTTCGTGGGCCGCTCCTCAAGTACTCGCATT
TTTCAATGGTATTGCCCCCCTCTGAGCGGTAATGCTCTCCCCCCTTGTTG
CCAGCGAAGCAGCAGCACACACGGCAGACGAGAAACACTCATGTGGTAAC
CGTTGGTCACACATCGAACATTTTGCTCATGCGGCATCGTTTAAGAAAGG
GCCACACGCAATATTTCAAAATCACAAATACGCACCAGGATGCAAGTGGG
GACGAGACGCACGGGGGTTGCATTGGCCAGACTGGAATTTGGGAGAGGGG
ACCTGCTGGTGGTGCGGCGCCTTCCGAAGACGGCTGCGTCCCAACCTCCC
ACGAGCGGGCACAAGGTACGTGTTGGGTAGTTGTACAGCAGTTGTAGGGT
GGTTGTCTGCAGTCTTGATCAGGACACCGTGTCGATTCTTGCCGCCTGTG
TACCCCTTGCCTTTTGGATCTCGTTTGTTCGAGGGGCTGCTTTTTGTAAT
AGTGGTGGTGGGTCAGCATCCGTGGGACATGAAACTTTGCCCCAATGTGG
CGGATGTGTTCTCGGACTTGGCGAGAACTGAGATTGCTCCTTTCGAAGCA
CCTCGCCCACACTGACCCGCTCCACTGTAAGCCACACTTCTGCCCTTGAG
ACTCTTCGACCTGTCACTCGTTTCATTTGTTCACAAGAAGTTTGTGGCAG
AGCGGCAGCGCACGTGAATTGGGAATGCATGGACGATGCTTGGTGCCCCT
TTTGGAAAATGCAATGTTGCCGCGCGTTATCTCGCGGAGAATGAACGGAA
CAGCAGTGACAACGCGGTAGAACATGGACCACGATACAGGATCTTGCTGC
ACCGTCAAAGGTCTTTGGTTTTGGTGTGCATGCTTGCGTGCACTTGTCTA
CTCAGTCCCTACAACTCGCCGCAAGCTTGTTCAGTTCTTGGTTCGGAGTA
TCTTCGTACATATACAACATATCACCTTACAAGCGTAATCCTTTCGTTGT
CCACGCTATGAAAGTCCGTGGGTTTGCGGTTACTCATCACTCTTCGAACC
GCGATGGCTCGTGACTGTTGGTGAGGACTCTGACTCCTCATGACCGTTCA
ACCTGCCGATGCCGCGACCATGGCTGGCGAATCAGACACGGCCGATGCAT
TAGCAACCTCGGGACCAAACGACGGAAATGCAGCGGGAACCCCAAACTCT
GCGGCTGGCGCGGGCACCTGGTCTCCGCAGTGGGGGTGGTACGTGACCAT
GACCCCTCCTCAGGTGTGTCGTCGTCGTTGTTGTCGCAGTCACTAATGTC
ACTGCGGGTGTTGTTTTCTCTGTCATTGTCGACGTTGGCGATGTTGGTGG
TGTATCTTGTAACACCGGGTCGTTATGAGTGTTGTTATGGTTTTCGCCGC
TTGTGTTGTGTTGATGCAAGAAATGGATGTGGTGGAATGTAGTGGCATCT
TTGTCGTCGGTTGCCTGAGAACGATCACCGCTCTCTGTAGGGTATCCCTG
CTTTGCCTCTTGGAGCGAGCTTGGTCAGTCTTGGCTGAAGACAGTTCAGT
TCACCATTCGGCATTTTTTTTCTTTTTTCGTATGCCTAGGTTTGATCGCA
CGGCTGCGGTGTCGTCTGGATTTTCACCGTCGTAGCGCTCCCTGCGTCCC
CATGTTCGTCCTCAACAGCCTCGTTTTTCTTTTTACCGGTCATGCCGTCG
TTTGCTCTGCCGAGCAGGACCAGTATCCGGCTCAGCAGAACCCGATTCCG
GGCGTCAAACTCCCTACCCCTACCGCCTCTACCGAATCTCCGGACACGCC
GA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1104:23302..26303-

>mRNA_H-canaliculatus_F_contig1104.953.1 ID=mRNA_H-canaliculatus_F_contig1104.953.1|Name=mRNA_H-canaliculatus_F_contig1104.953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1092bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1104:23302..26303- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAAGAGAAGGAGGCGACAACGACGACGACGACGGTGACGAAGTGTT
CCACAGTGCGCTTCAGCTGGCGGTAGCTGGAGACTGCAGCGATGGCGAGG
ACCCTGGTGATGTGGAGGACGTTGAGGCTACGGAGGACTTGACAGGGATT
GTCGTCGGGTGTGGTGCGCGGGTGGTGGAGCACGGCACGTTCTACGGAAC
CACGCGGGGAGGAAGAGAAGGAGGCGACAACGACGACGACGACGGTGACG
AAGTGTTCCACAGTGCGCTTCAGCTGGCGGTAGCTGGAGACTGCAGCGAT
GGCGAGGACCCTGGTGATGTGGAGGACGTTGAGGCTACGGAGGACTTGAC
AGGGATTGTCGTCGGGTGTGGTGCGCGGGTGGTGGAGCACGGCACGTTCT
ACGGAACCACGCGGGATGCAAGTGGGGACGAGACGCACGGGGGTTGCATT
GGCCAGACTGGAATTTGGGAGAGGGGACCTGCTGGTGGTGCGGCGCCTTC
CGAAGACGGCTGCGTCCCAACCTCCCACGAGCGGGCACAAGGATGCAAGT
GGGGACGAGACGCACGGGGGTTGCATTGGCCAGACTGGAATTTGGGAGAG
GGGACCTGCTGGTGGTGCGGCGCCTTCCGAAGACGGCTGCGTCCCAACCT
CCCACGAGCGGGCACAAGACACGGCCGATGCATTAGCAACCTCGGGACCA
AACGACGGAAATGCAGCGGGAACCCCAAACTCTGCGGCTGGCGCGGGCAC
CTGGTCTCCGCAGTGGGGGTGGTACGTGACCATGACCCCTCCTCAGACAC
GGCCGATGCATTAGCAACCTCGGGACCAAACGACGGAAATGCAGCGGGAA
CCCCAAACTCTGCGGCTGGCGCGGGCACCTGGTCTCCGCAGTGGGGGTGG
TACGTGACCATGACCCCTCCTCAGGACCAGTATCCGGCTCAGCAGAACCC
GATTCCGGGCGTCAAACTCCCTACCCCTACCGCCTCTACCGAATCTCCGG
ACACGCCGGACCAGTATCCGGCTCAGCAGAACCCGATTCCGGGCGTCAAA
CTCCCTACCCCTACCGCCTCTACCGAATCTCCGGACACGCCG
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