mRNA_H-canaliculatus_F_contig11028.944.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11028.944.1
Unique NamemRNA_H-canaliculatus_F_contig11028.944.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A6H5L8C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8C0_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 5.560e-84
Identity = 158/272 (58.09%), Postives = 178/272 (65.44%), Query Frame = 1 
Query:   25 MLSRHATMGILLLRATSTLAWAPGSLRLTRYGRFGADICGRCRSSTSPTATTT--AAPLHRSSSNGRGSSGRRGLRTFATLSTTETGEAVNSEDGARQGSSSDEVGNGELSPGTAGRVSISQRGGSDENSSSVVEIQPLLQRHMEILGSPAGKKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            MLSRH TMG+LLLRATSTLAW P      R GRF A    R  S+ S  A+    ++P                                       +  SS++ G+ E  P      ++    G +    S VE+QPLLQRHME LGSP  +K+KTRQHVNPLAATFQ PVVLPERWFQ+ FRDPTAPLLVDIGCAKGSFVR MA   PERNYLGLEIRRPTAA+ALERAA+LGTRNCHVVCCNANVDLDAVLTEA Q+GASIDT+CIQFP
Sbjct:    1 MLSRHTTMGLLLLRATSTLAWVPAQ----RSGRFAAACYRRYPSNASQPASAIGLSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQRSSEDDGSNEQQPRKVTTTAVVD--GQERQQGSGVEVQPLLQRHMEKLGSPDRRKVKTRQHVNPLAATFQAPVVLPERWFQAAFRDPTAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAARLGTRNCHVVCCNANVDLDAVLTEAAQHGASIDTVCIQFP 266
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: D7FPV8_ECTSI (tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV8_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.990e-68
Identity = 110/129 (85.27%), Postives = 117/129 (90.70%), Query Frame = 1 
Query:  448 MEILGSPAGKKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            ME LGSP  +K+KTRQHVNPLAATFQ PVVLPERWFQ+ FRD +APLLVDIGCAKGSFVR MA   PERNYLGLEIRRPTAA+ALERAA LGTRNCHVVCCNANVDLDAVLTEA Q+GASIDT+CIQFP
Sbjct:    1 MEKLGSPDRRKVKTRQHVNPLAATFQAPVVLPERWFQAAFRDLSAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAAGLGTRNCHVVCCNANVDLDAVLTEAAQHGASIDTVCIQFP 129
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A835ZDY0_9STRA (Guanine-N(7)--methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.390e-36
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 1 
Query:  421 EIQPLLQRHMEILGSPAGKKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            E QP LQ+H++ L     +K+K RQHVNPLA++ Q+PV L + W++  F D T PL +DIGCA G F  DMA A P RNYLGL+IR P  AVAL +A +    NCH + CNANV+L+ +L + +  G  ++ + +QFP
Sbjct:   28 ESQPALQQHIDRLHRVGRRKLKARQHVNPLASSHQQPVQLVDGWYRKAFADTTKPLHLDIGCAYGRFCLDMATADPTRNYLGLDIRWPVVAVALCKATERTLDNCHFISCNANVNLERILGDVIAAGGVVERVSVQFP 165
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A482UT47_9ARCH (tRNA (Guanosine(46)-N7)-methyltransferase TrmB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UT47_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 6.880e-26
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:  466 PAGKKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            P   ++K RQHVNPL++T+Q P+ LP  W Q  + +   P+++DIGCAKGS+V DMA      N+LGLEIRRP   + L R       N H +  NANVDL+ +L     +  SI  +CIQFP
Sbjct:  112 PGALRLKVRQHVNPLSSTYQRPLSLPNTWIQDAYPNSNLPMVLDIGCAKGSWVLDMAAQHTHINFLGLEIRRPVVNLCLRRKQHRQLTNVHFLPSNANVDLENLLQSLHSHHVSIQCVCIQFP 234
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: R7QPP6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP6_CHOCR)

HSP 1 Score: 105 bits (262), Expect = 2.030e-22
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  460 GSPAGKKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEA 789
            GS     ++ RQHVNPLA  + +P+ LP  W+   F+DP+ PL+VD+G AKG F+  +A +   RN+LGLEIR P    A   AA  G  N   + CNANV L AVL +A
Sbjct:   23 GSVENGTVRVRQHVNPLARRWSQPLQLPHEWYSQAFQDPSLPLVVDVGVAKGRFLAKLAASDASRNFLGLEIREPLVHQANRAAASAGRGNLFYLACNANVSLAAVLADA 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A7S0PU57_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PU57_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.250e-22
Identity = 60/122 (49.18%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:  478 KIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPE-RNYLGLEIRRPTAAVALERAAKLG-TRNCHVVCCNANVDLDAVLTEAVQ-NGASIDTICIQFP 834
            K + RQHVNPLA  FQ P VL   W +  + D + PL +DIGC KG F+RD+A    E +NYLGLEIR      A ER AK G T     V CNANVDL+ +LT  V+  G  +D + IQ+P
Sbjct:   98 KSRFRQHVNPLARKFQHPTVLSTNWPEDVYDDISLPLHMDIGCGKGGFLRDLAGNSTESKNYLGLEIRPSVVEYAQERIAKRGLTGKLDYVGCNANVDLERLLTHYVEAGGGPVDIVSIQYP 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A3M1STK3_9CYAN (tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M1STK3_9CYAN)

HSP 1 Score: 101 bits (252), Expect = 1.810e-21
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  481 IKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            ++ RQHVNPL+  +Q PV+LP   ++  +  PT PLL+DIGCA+G F+  +A  QP+ N+LGLEIR P    A     ++G  N H + CNAN DLDA+L  ++ +G  +  + IQFP
Sbjct:    4 VRVRQHVNPLSQKYQRPVILPP--WERIYAKPTQPLLLDIGCARGRFLYQLAPLQPDWNHLGLEIREPLVEEANRWRDEVGLTNLHYLFCNANRDLDAILA-SLPSGV-LRRVAIQFP 117
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A8J7E9S3_9CYAN (tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E9S3_9CYAN)

HSP 1 Score: 100 bits (250), Expect = 3.960e-21
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1 
Query:  481 IKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            ++ RQHVNPL+  +Q PV +P+  +   F  P  PL +DIGC KG FV  MA+  PE N+LGLEIR+P    A +R  + G  N HV+ CN N+ L A+L E+  +   +  + IQFP
Sbjct:   16 VRVRQHVNPLSERYQAPVAMPD--WSEVFAYPQRPLHIDIGCGKGMFVLQMAQLVPEGNFLGLEIRKPVVESAQKRQQEAGLTNLHVMFCNVNISLRALL-ESWGDRNPLQQVSIQFP 130
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: UPI001C017C3B (tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1 Tax=Leptothoe kymatousa TaxID=2651727 RepID=UPI001C017C3B)

HSP 1 Score: 99.0 bits (245), Expect = 1.770e-20
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:  484 KTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            + RQHVNPL   + +PV  P  W    F  PT PL +DIGCAKG F+RDMA+  P+ N+LGLEIR P    +L+   +LG  N H++ CNAN  L  +LT   Q    +    IQFP
Sbjct:    3 RVRQHVNPLNIRYSKPVT-PPAW-SDIFAHPTQPLHIDIGCAKGYFIRDMAQLCPDWNFLGLEIREPLVEQSLKHLDQLGLNNLHMLFCNANNSLQPLLTSLPQPPQRVS---IQFP 114
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Match: A0A1U7IZN9_9CYAN (tRNA (guanine-N(7)-)-methyltransferase n=11 Tax=Cyanobacteria TaxID=1117 RepID=A0A1U7IZN9_9CYAN)

HSP 1 Score: 97.4 bits (241), Expect = 5.490e-20
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:  481 IKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFVRDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDAVLTEAVQNGASIDTICIQFP 834
            ++ RQHVNPL+  +Q PV +P   + + F +P  PL +DIGCAKG F+  MA+ QPE N+LGLEIR+P    A +R  +    N H + CN N+ L ++L E+  +   +  + IQFP
Sbjct:    4 VRVRQHVNPLSGKYQAPVEVPN--WSAVFANPQQPLHIDIGCAKGVFLLQMAQLQPEWNFLGLEIRKPVVESAQKRQQEAELTNLHFMYCNVNISLRSLL-ESWGDQNPLQQVSIQFP 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11028.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8C0_9PHAE5.560e-8458.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPV8_ECTSI1.990e-6885.27tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Ect... [more]
A0A835ZDY0_9STRA9.390e-3648.55Guanine-N(7)--methyltransferase n=1 Tax=Tribonema ... [more]
A0A482UT47_9ARCH6.880e-2645.53tRNA (Guanosine(46)-N7)-methyltransferase TrmB n=1... [more]
R7QPP6_CHOCR2.030e-2246.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0PU57_9STRA4.250e-2249.18Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A3M1STK3_9CYAN1.810e-2144.92tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Cya... [more]
A0A8J7E9S3_9CYAN3.960e-2144.07tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Nod... [more]
UPI001C017C3B1.770e-2046.15tRNA (guanosine(46)-N7)-methyltransferase TrmB n=1... [more]
A0A1U7IZN9_9CYAN5.490e-2042.37tRNA (guanine-N(7)-)-methyltransferase n=11 Tax=Cy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11028contigH-canaliculatus_F_contig11028:410..4339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue4.8e-56
Seed eggNOG ortholog2880.D7FPV8
KEGG rclassRC00002,RC00043
KEGG koko:K00927,ko:K03439
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019253,GO:0019538,GO:0019685,GO:0030312,GO:0031967,GO:0031975,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901576
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGsCOG0220@1,KOG3115@2759
Ec32 ortholog descriptiontRNA (guanine-N(7)-)-methyltransferase
Ec32 orthologEc-01_008520.1
EC2.1.1.33,2.7.2.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04147
Hectar predicted targeting categorysignal peptide
Exons5
Model size1193
Cds size1158
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.4597049-UTR-H-canaliculatus_F_contig11028:409..4331622928778.4597049-UTR-H-canaliculatus_F_contig11028:409..433Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11028 410..433 +
1696845560.526609-UTR-H-canaliculatus_F_contig11028:409..4331696845560.526609-UTR-H-canaliculatus_F_contig11028:409..433Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11028 410..433 +
1622928778.5700386-UTR-H-canaliculatus_F_contig11028:4328..43391622928778.5700386-UTR-H-canaliculatus_F_contig11028:4328..4339Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11028 4329..4339 +
1696845560.6124845-UTR-H-canaliculatus_F_contig11028:4328..43391696845560.6124845-UTR-H-canaliculatus_F_contig11028:4328..4339Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11028 4329..4339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.4748313-CDS-H-canaliculatus_F_contig11028:433..8881622928778.4748313-CDS-H-canaliculatus_F_contig11028:433..888Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 434..888 +
1696845560.540275-CDS-H-canaliculatus_F_contig11028:433..8881696845560.540275-CDS-H-canaliculatus_F_contig11028:433..888Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 434..888 +
1622928778.4899092-CDS-H-canaliculatus_F_contig11028:1348..14701622928778.4899092-CDS-H-canaliculatus_F_contig11028:1348..1470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 1349..1470 +
1696845560.5642822-CDS-H-canaliculatus_F_contig11028:1348..14701696845560.5642822-CDS-H-canaliculatus_F_contig11028:1348..1470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 1349..1470 +
1622928778.5123453-CDS-H-canaliculatus_F_contig11028:2442..26001622928778.5123453-CDS-H-canaliculatus_F_contig11028:2442..2600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 2443..2600 +
1696845560.578103-CDS-H-canaliculatus_F_contig11028:2442..26001696845560.578103-CDS-H-canaliculatus_F_contig11028:2442..2600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 2443..2600 +
1622928778.5295262-CDS-H-canaliculatus_F_contig11028:3090..32081622928778.5295262-CDS-H-canaliculatus_F_contig11028:3090..3208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 3091..3208 +
1696845560.594841-CDS-H-canaliculatus_F_contig11028:3090..32081696845560.594841-CDS-H-canaliculatus_F_contig11028:3090..3208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 3091..3208 +
1622928778.5574017-CDS-H-canaliculatus_F_contig11028:4023..43281622928778.5574017-CDS-H-canaliculatus_F_contig11028:4023..4328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 4024..4328 +
1696845560.6043205-CDS-H-canaliculatus_F_contig11028:4023..43281696845560.6043205-CDS-H-canaliculatus_F_contig11028:4023..4328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11028 4024..4328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11028.944.1prot_H-canaliculatus_F_contig11028.944.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11028 434..4328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11028.944.1

>prot_H-canaliculatus_F_contig11028.944.1 ID=prot_H-canaliculatus_F_contig11028.944.1|Name=mRNA_H-canaliculatus_F_contig11028.944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=386bp
MLSRHATMGILLLRATSTLAWAPGSLRLTRYGRFGADICGRCRSSTSPTA
TTTAAPLHRSSSNGRGSSGRRGLRTFATLSTTETGEAVNSEDGARQGSSS
DEVGNGELSPGTAGRVSISQRGGSDENSSSVVEIQPLLQRHMEILGSPAG
KKIKTRQHVNPLAATFQEPVVLPERWFQSTFRDPTAPLLVDIGCAKGSFV
RDMARAQPERNYLGLEIRRPTAAVALERAAKLGTRNCHVVCCNANVDLDA
VLTEAVQNGASIDTICIQFPVRGLTLPSRGPRRPRSSLQDEALQAASDAG
DRANCLRPGGMACLFRHFSGLEIGVSLVLSASLSPPRSLSVPLTPMHHPP
VHQQTHFLRAAKCPASTHARTRHRMSPYGDVICEF*
back to top

mRNA from alignment at H-canaliculatus_F_contig11028:410..4339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11028.944.1 ID=mRNA_H-canaliculatus_F_contig11028.944.1|Name=mRNA_H-canaliculatus_F_contig11028.944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11028:410..4339+ (Hapterophycus canaliculatus Oshoro5f female)
AGCAACTCGAGGGACCACAGGAGAATGCTCTCCCGCCATGCCACCATGGG
AATTCTACTCTTGCGAGCGACGTCCACACTAGCATGGGCACCAGGGTCAC
TTCGCTTGACTCGGTATGGTCGATTCGGCGCCGATATTTGTGGCCGATGT
CGCAGCAGCACTTCTCCAACTGCAACGACTACCGCGGCTCCTCTTCACCG
CTCATCATCGAACGGCAGGGGCAGCAGTGGTCGCCGCGGCCTTCGAACCT
TCGCGACCCTTTCAACAACGGAGACAGGAGAAGCTGTCAACAGCGAAGAC
GGAGCGAGACAGGGGTCAAGTAGCGACGAAGTTGGAAATGGGGAGCTATC
ACCCGGCACGGCTGGTAGAGTCAGCATCAGTCAAAGAGGAGGGAGCGATG
AAAACAGCAGCAGCGTTGTGGAAATCCAACCTCTCCTTCAGCGACACATG
GAGATCCTCGGGTCTCCGGCCGGGAAAAAGTGAGTGGGGAAACAGCGGCA
GTGCACAGGTATCATGGTGCATTGCTGCCATTTCAATCAGAATGCCTCTA
CCAAAAACCACCCGCGCCACGGCGTTTTTATGCGGAGATTCGATCCAACA
TGAACCGGTACGCAGGCCCCTGCGGAGGAATGTCTTCCATCCCGCAGAAA
CCGGAGAATAGCACCGGCAGCACCTCAGAGAATAATCTTGCAGCAGCGTG
GACTCTCATCGCGCAGTACCATGTGGCCTTCTCGAGTCCGCACGTGGCCG
TCATCCGCCACACCAAGCAATGTGCGGGAGGGCAAACTCCTCCTCATCTA
GAAAGTATACAAGGAAGATGGCATGCGGGCAAACGTGCGACCATGCCGTC
TAGGAGCTTACCCGTCCACCCCGTGTCCTCGGCTACGTCCTCGTGTTCTC
TCTTTTGGCCGGTTGCCTCCTCTCGCCCTTTCGGTCTAGGATCAAGACTC
GGCAGCACGTCAACCCCCTTGCGGCCACGTTCCAGGAGCCAGTCGTCTTG
CCAGAACGTTGGTTCCAGTCAACCTTTCGGGACCCTACGGCGCCGCTGCT
GGTGGATATCGGTGCGGATATTTTGCGTTCGTTGCGCGTTCTCGACTTTT
TTGTGCCATTCGTTGGTCGCGCCAGGTCCGACTTGCTCGGTCGTTCTGAA
ATCGGCAAACATCTCCTCCGAATTGCGAGTGAGAAAGTGGGTCAGCGCTT
TTCCGGCGAAGATAGCGCGATCGAAGAGAAACAAGCAAGTGCCGCGTTTG
TGAAGCTAAAGGCGGTTTTCACTCCGATAGCGATCCTCGTTTGAAAGTTG
CAGCAGAAAAGGCGTGGTAAGCGTCGTTTCACAACACTACTCCCTACACG
CGATGTGCCGATAATCACAATCCACATCGTTTGAAGGCGAAGCGTGGCGA
CACGCCTTCCTAAAGTGCAAATTCTGCGGAAAGAAAATCGCCCAAGTTAC
GCCTATGAAATCCAGCTAGAATGGACAGAGGTACGACATCGTGTAGGGCA
ACATCAACATTACTCCACGAAGAGCATTGCCCTTGTTGGGTAGGATAGCA
ACTGACCTAAGCAAACTTTGCCCAACGCTCTCCCCAATCGAACAAGCCTC
GTCAAAGACAGCTGGAACTTTCTGCGCAGCTTTTGTTTTATGCATCGCCG
GCAGCGATAGATGGAGAGGAGACGGAGCTCCCCCAGCTTGTTTTTAGTGA
CTGGGTTCCAGGGAGAAAGCGACGCTTTCCCGCAAAGCTGCTCACAAATG
CTCAGCCTCTGCGTGATCTCGCCCGCCTATTCCTGCGTTTTGTGTGCCTT
AGAACCTTCTCGTCTATCGATGTTATTGATTTTGCCGGTATCCGAGCGTC
TCCGGGCGGACAAACGGGGATTCTATTCGATACATGCGTGCACACCAAAC
CGTTAATCGCCAACTGAGTGGATGCAGAAAAGAGGAACAAGAATGACGAA
TGAGCGAGAAAAAACAGATTTCCAAATCTTCCACTCTCGGAGAGCCCACG
TCGACCGACCATTTTCTCTATCCGACCGCTCAGGCTGCGCGAAGGGATCC
TTTGTGAGGGACATGGCCAGGGCGCAGCCGGAGCGAAATTACTTGGGTCT
GGAGATCCGACGGCCCACGGCGGCGGTGGCGTTGGAGAGAGCGGCGAAGC
TGGGCACGCGTAACTGCCACGTTGTCTGCTGCAACGCCAACGTGAGGGTC
GTTCGCGTTCAATATGTTTTGGCCTTTATACTCTTGCGCTACTCTTGCGT
CACGCGAATGTGTTGGAGAAAGGGCGGATCCCGTTGCGATTGGCCTTTTC
CTTCCCCTCCGGGAGGAAGAAGTAGGAGGAGCTGGTGATCAATTTTTTCA
CAGCGCCAATGTTGGAGTTCGTGATCAAGCACGGTGCTTCGTGTTTCGTC
GAGATTGGACTCTAGCCGACTAACTTCCAAAGGCGGCGGAAAGTAAAGGA
AATAGACCCGAGGCACATTTGCGACTTTTTTTTCTGTACTATACTTGCTC
GCTTTAAAGAACGTTGCTCACAAGCCTCATGAAAGAGTCTTGAAGGCAAT
AAGAGGGTGCGCCGCTTTTGATGCTCTCGGACGCTGGCTGGCGTGTGGGG
CGAACGCACTGGTTTTGTCTTGCGCATTTGTCACCACTTGTTTCTTGTTT
CGTTTTGGCGATTGATCGAACCCCCAACCAGGTAGACTTGGACGCCGTGC
TCACAGAAGCGGTGCAGAACGGAGCTTCGATCGACACGATCTGCATACAG
TTCCCGGTGAGAGGCCTGACCCTTCCCTCCCGCGGTCCGCGTCGCCCCCG
TAGACGCATTCGCACGCCAACATAAACAGTCCCTTTCTAGAAGACGTATA
AGAGACGAGTGCCGGACACCGGAACTATCTGGTTTGTTGGTATTTTGCGG
AACGGGTCGGTACATGATGCGCGTGCTCTGGGAAAGAACGCGCTGATCAA
TGTCTGATCTTTCGTCGCAGGGCGAGCTGGCTTTGCACTTTCGACCTGTT
GTTGTGGTGGAGCACCAAGTAGCACCCGGCAGCAGGCGTCTTTGGTTTCA
AACGATGCGGTGTCATGCCATGCGCTCGAAGACGAGAAGCGGCGTCGTGG
CGGCGCCGATGAACGGGCGTCGTTGTTGACGGGGCACGTTGCGAGAGCCT
CCGGTGACAAGCCTGCTGCGCGAACAGCTCGACTTTGTCGCGCTTGTGAA
ACCATCGCGTTGGACCATCGCGTTGAAGCTTGCCGATGACAAGGCGAAGG
GTCGACAAGGATGCGGTCAGATGCGGTGTCCCTTGTTTCCCTTGTGGCAG
ACACGGGGGGCGCTTTGCTGTTCACGTGACCGCGACGAGACAGCTATCCG
TAATCTCATCTCGCTCGCATCACGTCTCTGCACACGGCCTTCCGCCTGCG
GCAGGAATGGCTATGAGTCACGTTCCCCTATCGGCGTGTTGCACAGACGC
ACGGAGAGCCCGGCCGTGGGAGTGTCCCTGCTAGGAATGGGAACGGTGAT
TCGTCTCGAAAGTCATGCGTGGTGAATGATCGCATGGCTTAGACGACCAA
TTGACCATTACGATCCCCAAGCCCCCCCCCCAATGGTGCTCCTCTTTGCG
TGCTGTTTGGGCAGGATCCTCACTTCAAGACGAAGCACTACAAGCGGCGA
GTGATGCAGGTGATCGTGCAAATTGTTTGCGCCCCGGCGGAATGGCCTGC
TTGTTTCGTCATTTCTCTGGTCTAGAGATCGGCGTGTCCCTCGTTCTCTC
TGCATCTTTATCTCCCCCTCGCTCCCTCTCTGTCCCCCTTACCCCTATGC
ACCACCCTCCCGTACACCAGCAAACCCACTTTCTGCGTGCCGCGAAGTGC
CCCGCTTCGACGCACGCACGCACGCGACACCGCATGTCACCCTATGGAGA
TGTTATCTGCGAGTTCTGATGCCCTCCGAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11028:410..4339+

>mRNA_H-canaliculatus_F_contig11028.944.1 ID=mRNA_H-canaliculatus_F_contig11028.944.1|Name=mRNA_H-canaliculatus_F_contig11028.944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2316bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11028:410..4339+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCTCCCGCCATGCCACCATGGGAATTCTACTCTTGCGAGCGACGTC
CACACTAGCATGGGCACCAGGGTCACTTCGCTTGACTCGGTATGGTCGAT
TCGGCGCCGATATTTGTGGCCGATGTCGCAGCAGCACTTCTCCAACTGCA
ACGACTACCGCGGCTCCTCTTCACCGCTCATCATCGAACGGCAGGGGCAG
CAGTGGTCGCCGCGGCCTTCGAACCTTCGCGACCCTTTCAACAACGGAGA
CAGGAGAAGCTGTCAACAGCGAAGACGGAGCGAGACAGGGGTCAAGTAGC
GACGAAGTTGGAAATGGGGAGCTATCACCCGGCACGGCTGGTAGAGTCAG
CATCAGTCAAAGAGGAGGGAGCGATGAAAACAGCAGCAGCGTTGTGGAAA
TCCAACCTCTCCTTCAGCGACACATGGAGATCCTCGGGTCTCCGGCCGGG
AAAAAATGCTCTCCCGCCATGCCACCATGGGAATTCTACTCTTGCGAGCG
ACGTCCACACTAGCATGGGCACCAGGGTCACTTCGCTTGACTCGGTATGG
TCGATTCGGCGCCGATATTTGTGGCCGATGTCGCAGCAGCACTTCTCCAA
CTGCAACGACTACCGCGGCTCCTCTTCACCGCTCATCATCGAACGGCAGG
GGCAGCAGTGGTCGCCGCGGCCTTCGAACCTTCGCGACCCTTTCAACAAC
GGAGACAGGAGAAGCTGTCAACAGCGAAGACGGAGCGAGACAGGGGTCAA
GTAGCGACGAAGTTGGAAATGGGGAGCTATCACCCGGCACGGCTGGTAGA
GTCAGCATCAGTCAAAGAGGAGGGAGCGATGAAAACAGCAGCAGCGTTGT
GGAAATCCAACCTCTCCTTCAGCGACACATGGAGATCCTCGGGTCTCCGG
CCGGGAAAAAGATCAAGACTCGGCAGCACGTCAACCCCCTTGCGGCCACG
TTCCAGGAGCCAGTCGTCTTGCCAGAACGTTGGTTCCAGTCAACCTTTCG
GGACCCTACGGCGCCGCTGCTGGTGGATATCGGATCAAGACTCGGCAGCA
CGTCAACCCCCTTGCGGCCACGTTCCAGGAGCCAGTCGTCTTGCCAGAAC
GTTGGTTCCAGTCAACCTTTCGGGACCCTACGGCGCCGCTGCTGGTGGAT
ATCGGCTGCGCGAAGGGATCCTTTGTGAGGGACATGGCCAGGGCGCAGCC
GGAGCGAAATTACTTGGGTCTGGAGATCCGACGGCCCACGGCGGCGGTGG
CGTTGGAGAGAGCGGCGAAGCTGGGCACGCGTAACTGCCACGTTGTCTGC
TGCAACGCCAACGCTGCGCGAAGGGATCCTTTGTGAGGGACATGGCCAGG
GCGCAGCCGGAGCGAAATTACTTGGGTCTGGAGATCCGACGGCCCACGGC
GGCGGTGGCGTTGGAGAGAGCGGCGAAGCTGGGCACGCGTAACTGCCACG
TTGTCTGCTGCAACGCCAACGTAGACTTGGACGCCGTGCTCACAGAAGCG
GTGCAGAACGGAGCTTCGATCGACACGATCTGCATACAGTTCCCGGTGAG
AGGCCTGACCCTTCCCTCCCGCGGTCCGCGTCGCCCCCGTAGACTTGGAC
GCCGTGCTCACAGAAGCGGTGCAGAACGGAGCTTCGATCGACACGATCTG
CATACAGTTCCCGGTGAGAGGCCTGACCCTTCCCTCCCGCGGTCCGCGTC
GCCCCCGATCCTCACTTCAAGACGAAGCACTACAAGCGGCGAGTGATGCA
GGTGATCGTGCAAATTGTTTGCGCCCCGGCGGAATGGCCTGCTTGTTTCG
TCATTTCTCTGGTCTAGAGATCGGCGTGTCCCTCGTTCTCTCTGCATCTT
TATCTCCCCCTCGCTCCCTCTCTGTCCCCCTTACCCCTATGCACCACCCT
CCCGTACACCAGCAAACCCACTTTCTGCGTGCCGCGAAGTGCCCCGCTTC
GACGCACGCACGCACGCGACACCGCATGTCACCCTATGGAGATGTTATCT
GCGAGTTCTGAGATCCTCACTTCAAGACGAAGCACTACAAGCGGCGAGTG
ATGCAGGTGATCGTGCAAATTGTTTGCGCCCCGGCGGAATGGCCTGCTTG
TTTCGTCATTTCTCTGGTCTAGAGATCGGCGTGTCCCTCGTTCTCTCTGC
ATCTTTATCTCCCCCTCGCTCCCTCTCTGTCCCCCTTACCCCTATGCACC
ACCCTCCCGTACACCAGCAAACCCACTTTCTGCGTGCCGCGAAGTGCCCC
GCTTCGACGCACGCACGCACGCGACACCGCATGTCACCCTATGGAGATGT
TATCTGCGAGTTCTGA
back to top