mRNA_H-canaliculatus_F_contig11018.942.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11018.942.1
Unique NamemRNA_H-canaliculatus_F_contig11018.942.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11018.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11018contigH-canaliculatus_F_contig11018:330..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11018.942.1prot_H-canaliculatus_F_contig11018.942.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11018 335..856 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.2003827-UTR-H-canaliculatus_F_contig11018:329..3341622928778.2003827-UTR-H-canaliculatus_F_contig11018:329..334Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11018 330..334 +
1696845560.414993-UTR-H-canaliculatus_F_contig11018:329..3341696845560.414993-UTR-H-canaliculatus_F_contig11018:329..334Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11018 330..334 +
1622928778.2431664-UTR-H-canaliculatus_F_contig11018:856..9311622928778.2431664-UTR-H-canaliculatus_F_contig11018:856..931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11018 857..931 +
1696845560.4336593-UTR-H-canaliculatus_F_contig11018:856..9311696845560.4336593-UTR-H-canaliculatus_F_contig11018:856..931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11018 857..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.220378-CDS-H-canaliculatus_F_contig11018:334..8561622928778.220378-CDS-H-canaliculatus_F_contig11018:334..856Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11018 335..856 +
1696845560.4240294-CDS-H-canaliculatus_F_contig11018:334..8561696845560.4240294-CDS-H-canaliculatus_F_contig11018:334..856Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11018 335..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11018.942.1

>prot_H-canaliculatus_F_contig11018.942.1 ID=prot_H-canaliculatus_F_contig11018.942.1|Name=mRNA_H-canaliculatus_F_contig11018.942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=174bp
MMDAQPQSPLRVEIVGGGAEVSILDCHPCPCALLPSPSLSLSELIWRPPS
KRQNAPEESVQDRGRLPLFTFSGRCYFQNESATQKVHNSPLSQVTATQRG
RVIFTAPSDPSLAGRSEPVLRAVSSEGWIPRSPIRAGRSCGSIRVATLWR
RHSRTLLSQIVTKCASSRWRYRK*
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mRNA from alignment at H-canaliculatus_F_contig11018:330..931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11018.942.1 ID=mRNA_H-canaliculatus_F_contig11018.942.1|Name=mRNA_H-canaliculatus_F_contig11018.942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=602bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11018:330..931+ (Hapterophycus canaliculatus Oshoro5f female)
TGACAATGATGGACGCTCAACCCCAATCTCCTTTAAGGGTCGAGATCGTG
GGGGGGGGGGCGGAGGTGAGCATCCTTGATTGTCATCCGTGCCCGTGTGC
CCTCTTGCCCTCACCGTCCCTCTCTCTATCTGAGTTGATTTGGAGACCAC
CCTCAAAAAGGCAAAATGCTCCTGAAGAGTCTGTCCAGGACCGAGGACGA
CTCCCTCTTTTCACATTTTCGGGTCGCTGCTACTTTCAAAATGAGTCAGC
AACACAGAAGGTACACAACTCTCCGCTAAGCCAAGTTACAGCGACCCAAC
GAGGGAGGGTAATTTTTACTGCTCCTTCTGACCCCTCGTTGGCGGGCCGG
TCGGAACCCGTCCTGCGCGCCGTCTCTTCCGAGGGTTGGATCCCTCGGTC
CCCGATCCGCGCGGGTCGAAGCTGTGGAAGCATTCGTGTTGCGACCCTCT
GGCGAAGACATTCTCGCACTCTGTTATCTCAGATCGTTACAAAATGCGCG
TCCTCAAGATGGAGATATAGGAAATAGATCCCTGCTAAACGTGTCTCTGG
AGAGTAAGGATCTACTAACCTTACCACCGAAGACCACCGAAGACTGGCCT
TC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11018:330..931+

>mRNA_H-canaliculatus_F_contig11018.942.1 ID=mRNA_H-canaliculatus_F_contig11018.942.1|Name=mRNA_H-canaliculatus_F_contig11018.942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11018:330..931+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGACGCTCAACCCCAATCTCCTTTAAGGGTCGAGATCGTGGGGGG
GGGGGCGGAGGTGAGCATCCTTGATTGTCATCCGTGCCCGTGTGCCCTCT
TGCCCTCACCGTCCCTCTCTCTATCTGAGTTGATTTGGAGACCACCCTCA
AAAAGGCAAAATGCTCCTGAAGAGTCTGTCCAGGACCGAGGACGACTCCC
TCTTTTCACATTTTCGGGTCGCTGCTACTTTCAAAATGAGTCAGCAACAC
AGAAGGTACACAACTCTCCGCTAAGCCAAGTTACAGCGACCCAACGAGGG
AGGGTAATTTTTACTGCTCCTTCTGACCCCTCGTTGGCGGGCCGGTCGGA
ACCCGTCCTGCGCGCCGTCTCTTCCGAGGGTTGGATCCCTCGGTCCCCGA
TCCGCGCGGGTCGAAGCTGTGGAAGCATTCGTGTTGCGACCCTCTGGCGA
AGACATTCTCGCACTCTGTTATCTCAGATCGTTACAAAATGCGCGTCCTC
AAGATGGAGATATAGGAAATAGATGATGGACGCTCAACCCCAATCTCCTT
TAAGGGTCGAGATCGTGGGGGGGGGGGCGGAGGTGAGCATCCTTGATTGT
CATCCGTGCCCGTGTGCCCTCTTGCCCTCACCGTCCCTCTCTCTATCTGA
GTTGATTTGGAGACCACCCTCAAAAAGGCAAAATGCTCCTGAAGAGTCTG
TCCAGGACCGAGGACGACTCCCTCTTTTCACATTTTCGGGTCGCTGCTAC
TTTCAAAATGAGTCAGCAACACAGAAGGTACACAACTCTCCGCTAAGCCA
AGTTACAGCGACCCAACGAGGGAGGGTAATTTTTACTGCTCCTTCTGACC
CCTCGTTGGCGGGCCGGTCGGAACCCGTCCTGCGCGCCGTCTCTTCCGAG
GGTTGGATCCCTCGGTCCCCGATCCGCGCGGGTCGAAGCTGTGGAAGCAT
TCGTGTTGCGACCCTCTGGCGAAGACATTCTCGCACTCTGTTATCTCAGA
TCGTTACAAAATGCGCGTCCTCAAGATGGAGATATAGGAAATAG
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