mRNA_H-canaliculatus_F_contig11010.940.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11010.940.1
Unique NamemRNA_H-canaliculatus_F_contig11010.940.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11010.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11010contigH-canaliculatus_F_contig11010:590..3472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size379
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11010.940.1prot_H-canaliculatus_F_contig11010.940.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11010 590..3472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.9468424-CDS-H-canaliculatus_F_contig11010:589..6911622928777.9468424-CDS-H-canaliculatus_F_contig11010:589..691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 590..691 -
1696845560.3222883-CDS-H-canaliculatus_F_contig11010:589..6911696845560.3222883-CDS-H-canaliculatus_F_contig11010:589..691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 590..691 -
1622928777.9659688-CDS-H-canaliculatus_F_contig11010:1654..17451622928777.9659688-CDS-H-canaliculatus_F_contig11010:1654..1745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 1655..1745 -
1696845560.3320706-CDS-H-canaliculatus_F_contig11010:1654..17451696845560.3320706-CDS-H-canaliculatus_F_contig11010:1654..1745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 1655..1745 -
1622928777.9888067-CDS-H-canaliculatus_F_contig11010:2177..23061622928777.9888067-CDS-H-canaliculatus_F_contig11010:2177..2306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 2178..2306 -
1696845560.3416083-CDS-H-canaliculatus_F_contig11010:2177..23061696845560.3416083-CDS-H-canaliculatus_F_contig11010:2177..2306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 2178..2306 -
1622928778.0072649-CDS-H-canaliculatus_F_contig11010:3416..34721622928778.0072649-CDS-H-canaliculatus_F_contig11010:3416..3472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 3417..3472 -
1696845560.353213-CDS-H-canaliculatus_F_contig11010:3416..34721696845560.353213-CDS-H-canaliculatus_F_contig11010:3416..3472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11010 3417..3472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11010.940.1

>prot_H-canaliculatus_F_contig11010.940.1 ID=prot_H-canaliculatus_F_contig11010.940.1|Name=mRNA_H-canaliculatus_F_contig11010.940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
TAEHSSTQAIPDRCTSDPCSTDRLLSPLSSSPGPYHPTRARPTHKQAMSE
RKRLRRCSGGERLLPRGQSVIPSWIPEHERPLDRTSKGDSLQAPRVRLQG
KKATCQAGLEMLLQVSGEEMSCVTD*
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mRNA from alignment at H-canaliculatus_F_contig11010:590..3472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11010.940.1 ID=mRNA_H-canaliculatus_F_contig11010.940.1|Name=mRNA_H-canaliculatus_F_contig11010.940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2883bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11010:590..3472- (Hapterophycus canaliculatus Oshoro5f female)
ACAGCTGAGCACAGCTCTACACAGGCAATCCCTGACAGATGTACGTCCGA
CCCTTGGTAAGAAAGTTGGGCGAATGCAGAGCGGTATCCCGTCCGGCCGT
GTTGGTTAGAATTCCCGACCAACAAACTGGCAGGGCCGTAGGGCTTCTTC
GTCTCAGATAGCTCGCCCCGTTGCAGAAGCCACAGCGGCCGTGCTGCCTT
GAGACCCGCAAGGGCCTCCGCATCCTACAAGATTTCTTCTTCACGTTGCT
CAGTGCTCCTTTGCAAAGTGCACTCTTCGTGCGTTTGTCCTCAACTAACA
ACCATGTGTTTTTTTGGTGGGTGACGGGCTTCGACCTTCCGACTTCCAAC
CTCAGAAAGTGAAATGCTCAGTCATATTTCACGCCGTGTTGAATGTCGAG
TTCGTCCGAGCGGGCTGGTGCAGAAACATTTTCTATACTTCTAGCTTTTC
TTTGCTGTACATGCATCACGCAGGTGAGCGCGCTTTTCACCTGTTGGTTT
TCCTTTCAGTACTCAGTAATATTTTGCGTCCCTCTGGTGACGTGTTCTTT
GTCGATGTTTTCTTTCCTTTTTCTTTCCACCAATCTCTCTTTGTGTTGCG
TTTTGAGTCACCTACCGCAAGAAACCACCCGCGGATGAACACGTACAACG
TGCGAAGGATGCTGCTCCTTCTGTGCGCCAGCAGAATACATCTGGTGCAC
TGACCGCAGCCTGTTTTGAAGCACCGCGGATAGACATGTATAAATATCTC
GCAGGTTCGTGCCCTGAAGAAGAATGCTCTTACAGCAGCCTTCAATCGCC
TCCCAACACCCGCAACCAAAAAGTGGAGCATGTCCGCCAGACACAACTAC
AGTAAGTGCAACAATTCTTCAGCCGCAGGATCCCTGGACGAACTTAATGT
CTGCATGTCTGCACAAACGCGATTTATCTTGGTACACCCTACTGGAGACC
CCTTTTGGCGTCTGCCGCTGTTTGCGAGACGAGGTGTCTCTGTACCTGAA
CAGCGCTTGCACAAGTGTATGTATCTCAACGACAACAACATGCGGGGCGA
AGTTTGAGTTCGAAGGTACTGGCATCTTTTTTCACGTTTTCGAAGGGCTC
CACATCCTCCACCTGAATTCGGCATCGCGCACTCACAAACGTCTGTCGCA
CTCCTCCTCTCTCCAGCAGCACGGACCGACTGCTTTCGCCTCTCAGCTCT
AGCCCCGGCCCCTACCACCCGACTCGAGCCCGACCGACCCATAAGCAAGC
GATGTCGGAACGGAAGCGCCTTCGTCGTTGCAGCGGAGGGGAAAGGCAAG
AGACGTCTTTTTCGATCATGGGAAAAGAAAGGCGACAGTAAAAGCTTCGT
TTAATTTTCCTTCTTGAGGCCACCATCTCCCTGATCGTCTCAGCCGCTGC
TGAGCGGCCGAGGATATAGACAGATGGTGGGAGCATTGATCAGCGCGCCT
GGGCGACACCGCTCCTGTTGGCGCACGCCCGGTTACGCGCTTGGTTTATC
TTATAGATGGGGTATGGATGTGGTGTACGGGGGGATTTCGTGCGGGGGCA
GCAAAGATGCCCGAATTTCAAACTCGTTTTCCTGAACATGCCTCCCTCGA
TTTTCAGCCCACTCCCTAAAATGACCCCTCCCTCTCACTCTGCCATCTCA
CACCACTCGCTTCCCTCTCTCTGCTCCCACGCGTGCCCCGTCTCCCTCTT
CTTTCGGCAACGCACCATCTCCACCAGACTGCTGCCTCGAGGACAGAGCG
TGATACCCTCCTGGATACCAGAACATGAGCGCCCTTTAGATCGGACGTCG
AAGGGTGACTCGCTGCAGGTGTGTTGGCCTCCAGCTGGTAAATGAAACAG
AGGAGAGGCAATCAGATTGTTGATCTGCTTGGACGGCGGGCCTTGCTCGC
GGCAGATTTAAGGAAAGGGCCTCATGCCTTGCTTAGATATCTTTGGCGAC
CGCGTGCTGCCCGCCACGGCTGGGCACCGCGCTCGGCGTGCCCATCGCGG
ATATGGCGGCGCGCTCGCCCTGTTTTTCCTGGATTTGAACGAGGCCGCGG
ACTCTTTCTGTGGGTGCTGAAACCTATTTCAAATACACGCGAGAGCGCGC
GTTTTTTCCTTCAGCAGGGGAACTACGAACGTGCCCTGCCGGACGTTGGG
TTGCTGGCACCACCCGCCGGTCTGTGCACTCTTCAGCACGCTAATGACTA
GTGCCGTTTCGGCCTCGGAGCGTAGGGTCTTGTGTGTGTCATGCAGCTAA
TAATTTGTATCAGCTTTGTACGCCTCCGTAGCCGTCCCTTTGCGGCTATC
AGCCACGGTTATTACTGTAGTGCTCTGAGCAAGTGCGATCTCCCTTACCT
CACGCAGATGAGATAGCTTCAGCGTCTCCCATTGTCGAGGGACGACTCGA
GTGTGCATACATCTGTGCGTAAAGTGACCGCGTAATGCGTTTGCATCAGC
AGGAATCGGTCGTTGCTTTGAAGCGTGGCACTTTGCTAGGTCGTTTGTTC
AGCATCCAGTTGTTCGTGCGCGATTGAAGTTGAAACACTTTTTCGAGGAG
TGTGAACAAGTCATTTCGAAGTTCTTTGCATGAGTCGTTGGATACGATGC
ATGTCTTGAGAGTGGTATTCGTGTGCCAGCATACGCAATGGAGCGACGAT
ACGCCGCAGGTTGGCGACGCCCAAGTGGTTTCTCGAAGAAGTCCTTCAAA
TGATCCTTGACCCTCCTTCGCCGCTTGCCGACTTTGTGCTGATCCGTGAT
GCTACGGCCGCTGCTGCTGCTGCCGCTGCAGGCTCCACGAGTTCGACTTC
AAGGGAAGAAGGCAACATGTCAAGCGGGACTCGAGATGCTGCTTCAAGTA
TCAGGCGAGGAGATGTCTTGTGTAACCGATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11010:590..3472-

>mRNA_H-canaliculatus_F_contig11010.940.1 ID=mRNA_H-canaliculatus_F_contig11010.940.1|Name=mRNA_H-canaliculatus_F_contig11010.940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11010:590..3472- (Hapterophycus canaliculatus Oshoro5f female)
ACAGCTGAGCACAGCTCTACACAGGCAATCCCTGACAGATGTACGTCCGA
CCCTTGACAGCTGAGCACAGCTCTACACAGGCAATCCCTGACAGATGTAC
GTCCGACCCTTGCAGCACGGACCGACTGCTTTCGCCTCTCAGCTCTAGCC
CCGGCCCCTACCACCCGACTCGAGCCCGACCGACCCATAAGCAAGCGATG
TCGGAACGGAAGCGCCTTCGTCGTTGCAGCGGAGGGGAAAGCAGCACGGA
CCGACTGCTTTCGCCTCTCAGCTCTAGCCCCGGCCCCTACCACCCGACTC
GAGCCCGACCGACCCATAAGCAAGCGATGTCGGAACGGAAGCGCCTTCGT
CGTTGCAGCGGAGGGGAAAGACTGCTGCCTCGAGGACAGAGCGTGATACC
CTCCTGGATACCAGAACATGAGCGCCCTTTAGATCGGACGTCGAAGGGTG
ACTCGCTGCAGACTGCTGCCTCGAGGACAGAGCGTGATACCCTCCTGGAT
ACCAGAACATGAGCGCCCTTTAGATCGGACGTCGAAGGGTGACTCGCTGC
AGGCTCCACGAGTTCGACTTCAAGGGAAGAAGGCAACATGTCAAGCGGGA
CTCGAGATGCTGCTTCAAGTATCAGGCGAGGAGATGTCTTGTGTAACCGA
TTGAGCTCCACGAGTTCGACTTCAAGGGAAGAAGGCAACATGTCAAGCGG
GACTCGAGATGCTGCTTCAAGTATCAGGCGAGGAGATGTCTTGTGTAACC
GATTGA
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