mRNA_H-canaliculatus_F_contig11009.936.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11009.936.1
Unique NamemRNA_H-canaliculatus_F_contig11009.936.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11009.936.1 vs. uniprot
Match: A0A0G3ITX7_PENRO (Uncharacterized protein n=1 Tax=Penicillium roqueforti TaxID=5082 RepID=A0A0G3ITX7_PENRO)

HSP 1 Score: 294 bits (752), Expect = 3.200e-97
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 1 
Query:    1 IRDHDHIEADDDVPVLMSDXXXXXXXXXXDNSNNDFNLDEPSIILAHHSPQADPTPLIIGMEPLNNGIASNLVIYNHEMRYDQFIHNNYSIHMSGLDTIDYRMSYEYLIDSLDYLDRLIVQHQTLDALERVILPLNNGLDVQSQVVEIEISTIFELLSQLC 483
            IRDHDHIEADDDVPVLMS XXXXXXXXXXDNSNNDFNLDEPSIILAHHSPQADPTPLIIGMEPLNNGIASNLVIYNHEMRYDQFIHNNYSIHMSGLDTIDYRMSYEYLIDSLDYLDRLIVQHQTLDALERVILPLNNGLDVQSQVVEIEISTIFELLSQLC
Sbjct:  212 IRDHDHIEADDDVPVLMSXXXXXXXXXXXDNSNNDFNLDEPSIILAHHSPQADPTPLIIGMEPLNNGIASNLVIYNHEMRYDQFIHNNYSIHMSGLDTIDYRMSYEYLIDSLDYLDRLIVQHQTLDALERVILPLNNGLDVQSQVVEIEISTIFELLSQLC 372
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11009.936.1 vs. uniprot
Match: G8I2R3_9EURO (Uncharacterized protein orf459 n=1 Tax=Penicillium solitum TaxID=60172 RepID=G8I2R3_9EURO)

HSP 1 Score: 100 bits (250), Expect = 5.860e-22
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:  175 IGMEPLNNGIASNLVIYNHEMRYDQFIHNNYSIHMSGLDTIDYRMSYEYLIDSLDYLDRLIVQHQTLDALERVILPLNNGL-DVQSQVVEIEISTIFELLSQL 480
            +GMEPL+NG+  N V Y+ ++R D  I+NNY IHM G+D IDYRM Y  +++ LD LD LI ++Q L+A ER ILPL +GL +   +VV  +IS+I E+LS L
Sbjct:  356 VGMEPLDNGVLINQVTYSDQIRADDIIYNNYIIHMRGIDNIDYRMVYCDIVECLDNLDLLIAEYQALEATERAILPLVDGLFNTAHEVVREQISSILEVLSHL 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11009.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G3ITX7_PENRO3.200e-9799.38Uncharacterized protein n=1 Tax=Penicillium roquef... [more]
G8I2R3_9EURO5.860e-2251.46Uncharacterized protein orf459 n=1 Tax=Penicillium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11009contigH-canaliculatus_F_contig11009:4027..4512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.4001966-CDS-H-canaliculatus_F_contig11009:4026..45121622928777.4001966-CDS-H-canaliculatus_F_contig11009:4026..4512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 4027..4512 -
1696845560.0335646-CDS-H-canaliculatus_F_contig11009:4026..45121696845560.0335646-CDS-H-canaliculatus_F_contig11009:4026..4512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 4027..4512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11009.936.1prot_H-canaliculatus_F_contig11009.936.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11009 4027..4512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11009.936.1

>prot_H-canaliculatus_F_contig11009.936.1 ID=prot_H-canaliculatus_F_contig11009.936.1|Name=mRNA_H-canaliculatus_F_contig11009.936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
IRDHDHIEADDDVPVLMSDNDSDSNSSISDNSNNDFNLDEPSIILAHHSP
QADPTPLIIGMEPLNNGIASNLVIYNHEMRYDQFIHNNYSIHMSGLDTID
YRMSYEYLIDSLDYLDRLIVQHQTLDALERVILPLNNGLDVQSQVVEIEI
STIFELLSQLC*
back to top

mRNA from alignment at H-canaliculatus_F_contig11009:4027..4512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11009.936.1 ID=mRNA_H-canaliculatus_F_contig11009.936.1|Name=mRNA_H-canaliculatus_F_contig11009.936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:4027..4512- (Hapterophycus canaliculatus Oshoro5f female)
ATTAGAGACCATGATCATATAGAAGCTGATGATGATGTACCTGTATTAAT
GTCAGATAATGATTCAGATAGTAATAGTTCAATTAGCGACAATTCAAATA
ATGATTTTAATCTAGATGAGCCTAGTATAATACTGGCACATCATAGCCCT
CAAGCAGATCCAACTCCTCTGATTATAGGAATGGAGCCATTAAATAATGG
TATAGCATCTAATCTGGTTATATATAATCATGAAATGCGTTATGATCAAT
TCATACATAACAATTACTCTATACATATGTCAGGTTTAGATACTATAGAC
TACCGTATGTCTTATGAGTATTTAATAGATAGTTTAGATTATCTAGACAG
ACTAATAGTTCAACACCAAACGTTGGATGCATTAGAAAGAGTAATCTTAC
CCCTAAATAATGGGTTAGATGTTCAATCCCAAGTAGTTGAGATAGAAATC
TCAACAATATTTGAATTATTAAGTCAATTATGCTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11009:4027..4512-

>mRNA_H-canaliculatus_F_contig11009.936.1 ID=mRNA_H-canaliculatus_F_contig11009.936.1|Name=mRNA_H-canaliculatus_F_contig11009.936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:4027..4512- (Hapterophycus canaliculatus Oshoro5f female)
ATTAGAGACCATGATCATATAGAAGCTGATGATGATGTACCTGTATTAAT
GTCAGATAATGATTCAGATAGTAATAGTTCAATTAGCGACAATTCAAATA
ATGATTTTAATCTAGATGAGCCTAGTATAATACTGGCACATCATAGCCCT
CAAGCAGATCCAACTCCTCTGATTATAGGAATGGAGCCATTAAATAATGG
TATAGCATCTAATCTGGTTATATATAATCATGAAATGCGTTATGATCAAT
TCATACATAACAATTACTCTATACATATGTCAGGTTTAGATACTATAGAC
TACCGTATGTCTTATGAGTATTTAATAGATAGTTTAGATTATCTAGACAG
ACTAATAGTTCAACACCAAACGTTGGATGCATTAGAAAGAGTAATCTTAC
CCCTAAATAATGGGTTAGATGTTCAATCCCAAGTAGTTGAGATAGAAATC
TCAACAATATTTGAATTATTAAGTCAATTATGCTAAATTAGAGACCATGA
TCATATAGAAGCTGATGATGATGTACCTGTATTAATGTCAGATAATGATT
CAGATAGTAATAGTTCAATTAGCGACAATTCAAATAATGATTTTAATCTA
GATGAGCCTAGTATAATACTGGCACATCATAGCCCTCAAGCAGATCCAAC
TCCTCTGATTATAGGAATGGAGCCATTAAATAATGGTATAGCATCTAATC
TGGTTATATATAATCATGAAATGCGTTATGATCAATTCATACATAACAAT
TACTCTATACATATGTCAGGTTTAGATACTATAGACTACCGTATGTCTTA
TGAGTATTTAATAGATAGTTTAGATTATCTAGACAGACTAATAGTTCAAC
ACCAAACGTTGGATGCATTAGAAAGAGTAATCTTACCCCTAAATAATGGG
TTAGATGTTCAATCCCAAGTAGTTGAGATAGAAATCTCAACAATATTTGA
ATTATTAAGTCAATTATGCTAA
back to top