mRNA_H-canaliculatus_F_contig11001.931.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11001.931.1
Unique NamemRNA_H-canaliculatus_F_contig11001.931.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.800e-50
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGE 261
            AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALS E
Sbjct:  816 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSAE 899
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.430e-40
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALS 255
            AYGVNMPFR+CCFC SM+G+L PL+AQQMSGRAGRRGLDTQGNLL+MNM+WP+IQ LMLG IPAI GQDPQYPT+AL HALS
Sbjct:  753 AYGVNMPFRTCCFCESMEGILTPLLAQQMSGRAGRRGLDTQGNLLFMNMSWPRIQYLMLGTIPAIQGQDPQYPTVALQHALS 834
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: F0YFT5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFT5_AURAN)

HSP 1 Score: 123 bits (309), Expect = 7.470e-31
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 VRQAYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGE 261
            V  AYGVNMPFR+  FCG    LL PL+AQQM+GRAGRRGLDTQGNL+Y+ M+WP+I+ LM+G +PAI+G+ P +PT+AL  ALS E
Sbjct: 1523 VSLAYGVNMPFRTVMFCGDEGSLLTPLLAQQMAGRAGRRGLDTQGNLVYLGMSWPRIRKLMVGTVPAILGKPPHFPTMALPLALSAE 1609
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A7S1TTY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTY9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.400e-30
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHAL 252
            AYGVNMPFRSC F G M  LL PL+AQQMSGRAGRRGLD +GNL+Y NM WPKI+ LMLG +PAI G+DP YP + L   L
Sbjct:  275 AYGVNMPFRSCVFYGQMGNLLTPLMAQQMSGRAGRRGLDREGNLVYANMPWPKIKSLMLGRVPAIKGEDPLYPLLGLQKLL 355
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A7S4IZ82_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZ82_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.500e-30
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGEKE 267
            AYGVNMPFRSC FCG M   L PL+AQQM GRAGRRG+D QGN+LY+ M WP I+ LMLG I  + G++P+YP +AL HA++   +
Sbjct:  859 AYGVNMPFRSCVFCGDMGTTLTPLIAQQMQGRAGRRGMDVQGNVLYVGMDWPYIENLMLGQISQVTGKEPRYPIMALQHAIAAAND 944
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A1Z5JDF0_FISSO (Helicase ATP-binding domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDF0_FISSO)

HSP 1 Score: 120 bits (301), Expect = 8.900e-30
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGEKE 267
            AYGVNMPFRSC FCG M   L PL+AQQM GRAGRRGLD QGN++Y+ M WP I+ LMLG I  + G++P+YPT+ L  AL+   +
Sbjct:  856 AYGVNMPFRSCIFCGDMGDDLTPLIAQQMQGRAGRRGLDVQGNIIYLGMDWPYIENLMLGQISIVTGKEPRYPTMCLQQALAASND 941
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A7S1ZG66_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG66_TRICV)

HSP 1 Score: 120 bits (300), Expect = 1.210e-29
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGEKE 267
            AYGVNMPFRSC FCG M   L PL+AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + G++P+YP +AL H L+   +
Sbjct:  730 AYGVNMPFRSCVFCGDMGDALTPLIAQQMQGRAGRRGMDVQGNVVYVGMDWPYIENLMLGQISHVTGKEPRYPIMALQHCLAASND 815
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A7S4A060_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A060_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.210e-29
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 VRQAYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALS 255
            V  AYGVNMPFR+  FCG   GLL PL+AQQM+GRAGRRGLDTQGNL+Y+ M WP+I+ LM+G +P IVG+ P + T+AL  ALS
Sbjct:  769 VSLAYGVNMPFRTVMFCGDEGGLLTPLLAQQMAGRAGRRGLDTQGNLVYLGMTWPRIRRLMVGTVPGIVGKTPHFATMALPLALS 853
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: B7G3A5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3A5_PHATC)

HSP 1 Score: 120 bits (300), Expect = 1.220e-29
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGEKE 267
            AYGVNMPFR+C FCG M   L PL+AQQM GRAGRRGLD QGN+LY+ M WP I+ LMLG I  + G++P+YP I L  AL+   +
Sbjct:  868 AYGVNMPFRTCIFCGDMGDALTPLIAQQMQGRAGRRGLDVQGNILYLGMDWPYIENLMLGQISQVTGKEPRYPLIVLQQALAASND 953
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BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Match: A0A6V2ICP0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ICP0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.080e-29
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSGEKE 267
            AYGVNMPFRSC FCG M   L PL+AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + G+ P+YP IAL  AL+   +
Sbjct:  740 AYGVNMPFRSCLFCGDMGDSLTPLIAQQMQGRAGRRGMDVQGNVIYLGMEWPYIENLMLGQISKVDGKQPRYPIIALQQALAASND 825
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11001.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI2.800e-5098.81Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA1.430e-4082.93P-loop containing nucleoside triphosphate hydrolas... [more]
F0YFT5_AURAN7.470e-3164.37Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1TTY9_9STRA2.400e-3069.14Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4IZ82_9STRA3.500e-3060.47Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5JDF0_FISSO8.900e-3060.47Helicase ATP-binding domain-containing protein n=2... [more]
A0A7S1ZG66_TRICV1.210e-2959.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4A060_9STRA1.210e-2964.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B7G3A5_PHATC1.220e-2960.47Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6V2ICP0_9STRA3.080e-2960.47Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11001contigH-canaliculatus_F_contig11001:3632..4447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D7FZQ4
Preferred nameDDX60
KEGG koko:K20103
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
EggNOG free text desc.helicase activity
EggNOG OGsCOG4581@1,KOG0949@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase superfamily 1/2, ATP-binding domain
Ec32 orthologEc-08_001070.1
Exons2
Model size267
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11001.931.1prot_H-canaliculatus_F_contig11001.931.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11001 3656..4447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.107083-UTR-H-canaliculatus_F_contig11001:3631..36551622928777.107083-UTR-H-canaliculatus_F_contig11001:3631..3655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11001 3632..3655 +
1696845559.9062462-UTR-H-canaliculatus_F_contig11001:3631..36551696845559.9062462-UTR-H-canaliculatus_F_contig11001:3631..3655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11001 3632..3655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.1218698-CDS-H-canaliculatus_F_contig11001:3655..37121622928777.1218698-CDS-H-canaliculatus_F_contig11001:3655..3712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11001 3656..3712 +
1696845559.9267218-CDS-H-canaliculatus_F_contig11001:3655..37121696845559.9267218-CDS-H-canaliculatus_F_contig11001:3655..3712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11001 3656..3712 +
1622928777.1390998-CDS-H-canaliculatus_F_contig11001:4261..44471622928777.1390998-CDS-H-canaliculatus_F_contig11001:4261..4447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11001 4262..4447 +
1696845559.9356751-CDS-H-canaliculatus_F_contig11001:4261..44471696845559.9356751-CDS-H-canaliculatus_F_contig11001:4261..4447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11001 4262..4447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11001.931.1

>prot_H-canaliculatus_F_contig11001.931.1 ID=prot_H-canaliculatus_F_contig11001.931.1|Name=mRNA_H-canaliculatus_F_contig11001.931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQ
GLMLGDIPAIVGQDPQYPTIALHHALSGEKE
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mRNA from alignment at H-canaliculatus_F_contig11001:3632..4447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11001.931.1 ID=mRNA_H-canaliculatus_F_contig11001.931.1|Name=mRNA_H-canaliculatus_F_contig11001.931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11001:3632..4447+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGTCAGGCGTACGGCGTGAACATGCCCTTCCGGTCTTGCTGCTTCTG
CGGCAGCATGGACGGACTGCTCAACCCTCTCGTGAGTCTCAGATCATATT
CTTGTTCTTGTAGAAAAAAATGTGACAATACCGGTTGAAGACCTCCTGAG
GTACGTCGTGCCAGGCGTTGCTCGAGGCTTCTGTTGAGCTCCAAACGAGA
AGGGCTCATTGATTTGTAAGGTTGGGACAAAAAAACATGAACATAAAAAA
TCTTCTTCTATTTGTTCTCGTGGATGGTGATGTTTCCATCGCGTGGCCTA
CCAACACCCTCTGCTCTTGAAGAGACTTGCCAAACCAAAGTGCCACTCTG
CATGGAAAGAGGATATTGCCTGTGCGGCATGTTCAAGGTACGCCCTAGTC
AACCAATGGCGTTCGTGGTGGCACCACAACTAAAAGCTGGAGAAAAAACG
ATATTGCCACGTATCTCGATCGATGACATCAACCCTCACCGGAAAGAGCC
CCACAAAAAGTTCTGAGAGTCCCGTCTGCAAATATTCCTTCTGCGTTGCT
GATATTTCACCAGAGACACAATAGACGCTCGAAACCAACATGCAGTCGCA
TTGGCGACTTACCACTTTTCCGCATTACAGGTTGCCCAACAGATGTCGGG
GAGAGCCGGGCGCCGTGGCCTAGACACTCAGGGCAACCTGTTGTACATGA
ACATGGCGTGGCCCAAGATCCAGGGGCTGATGCTCGGAGACATCCCGGCC
ATCGTTGGGCAGGACCCACAATATCCTACCATCGCGCTCCACCACGCCCT
TTCTGGTGAGAAAGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11001:3632..4447+

>mRNA_H-canaliculatus_F_contig11001.931.1 ID=mRNA_H-canaliculatus_F_contig11001.931.1|Name=mRNA_H-canaliculatus_F_contig11001.931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11001:3632..4447+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCTTCCGGTCTTGCTGCTTCTGCGGCAGCATGGACGGACTGCTCAA
CCCTCTCATGCCCTTCCGGTCTTGCTGCTTCTGCGGCAGCATGGACGGAC
TGCTCAACCCTCTCGTTGCCCAACAGATGTCGGGGAGAGCCGGGCGCCGT
GGCCTAGACACTCAGGGCAACCTGTTGTACATGAACATGGCGTGGCCCAA
GATCCAGGGGCTGATGCTCGGAGACATCCCGGCCATCGTTGGGCAGGACC
CACAATATCCTACCATCGCGCTCCACCACGCCCTTTCTGGTGAGAAAGAA
GTTGCCCAACAGATGTCGGGGAGAGCCGGGCGCCGTGGCCTAGACACTCA
GGGCAACCTGTTGTACATGAACATGGCGTGGCCCAAGATCCAGGGGCTGA
TGCTCGGAGACATCCCGGCCATCGTTGGGCAGGACCCACAATATCCTACC
ATCGCGCTCCACCACGCCCTTTCTGGTGAGAAAGAA
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