mRNA_H-canaliculatus_F_contig10999.913.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10999.913.1
Unique NamemRNA_H-canaliculatus_F_contig10999.913.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10999.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10999contigH-canaliculatus_F_contig10999:3742..4285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10999.913.1prot_H-canaliculatus_F_contig10999.913.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10999 3872..4183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.7645621-UTR-H-canaliculatus_F_contig10999:3741..38711622928771.7645621-UTR-H-canaliculatus_F_contig10999:3741..3871Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10999 3742..3871 +
1696845557.692295-UTR-H-canaliculatus_F_contig10999:3741..38711696845557.692295-UTR-H-canaliculatus_F_contig10999:3741..3871Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10999 3742..3871 +
1622928771.7927399-UTR-H-canaliculatus_F_contig10999:4183..42851622928771.7927399-UTR-H-canaliculatus_F_contig10999:4183..4285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10999 4184..4285 +
1696845557.7108355-UTR-H-canaliculatus_F_contig10999:4183..42851696845557.7108355-UTR-H-canaliculatus_F_contig10999:4183..4285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10999 4184..4285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.7788107-CDS-H-canaliculatus_F_contig10999:3871..41831622928771.7788107-CDS-H-canaliculatus_F_contig10999:3871..4183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10999 3872..4183 +
1696845557.7019577-CDS-H-canaliculatus_F_contig10999:3871..41831696845557.7019577-CDS-H-canaliculatus_F_contig10999:3871..4183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10999 3872..4183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10999.913.1

>prot_H-canaliculatus_F_contig10999.913.1 ID=prot_H-canaliculatus_F_contig10999.913.1|Name=mRNA_H-canaliculatus_F_contig10999.913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MGQNWQPPKACGVTVARFEFYACAFDVLGHMPAAVHNRNNMSGHVYNRKK
KWRNTEKGAVAVEAVHPRAHAIGGKTVCSCPPNEKNFSRLFCDIYHVRST
SIW*
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mRNA from alignment at H-canaliculatus_F_contig10999:3742..4285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10999.913.1 ID=mRNA_H-canaliculatus_F_contig10999.913.1|Name=mRNA_H-canaliculatus_F_contig10999.913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=544bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10999:3742..4285+ (Hapterophycus canaliculatus Oshoro5f female)
ACACGGCGGCGATTGTTGCAGCTGCAGCAACAGAAACCAGGCCTGCTGTA
GAGCGTGGCCTGGCAAGCAAGACAGCGCCCGGTAGGCACGACGGACCTAG
CTCCAGTCTGTCAGGCATGGGCTCGGGCTGATGGGACAGAACTGGCAGCC
GCCGAAGGCGTGTGGGGTGACAGTTGCCCGATTTGAGTTTTATGCGTGCG
CTTTCGATGTCCTCGGCCACATGCCTGCTGCCGTACACAACAGAAACAAC
ATGTCTGGACACGTCTACAACAGGAAGAAGAAATGGCGGAATACAGAGAA
GGGTGCGGTAGCGGTAGAAGCAGTCCACCCGAGGGCGCACGCCATCGGAG
GAAAAACGGTCTGTTCCTGCCCCCCGAATGAAAAAAACTTCTCGAGGCTT
TTCTGCGACATCTATCATGTACGGAGTACTAGTATCTGGTAGAAGTTGTC
GAATTCGCCGAGAACGCAACAGCCTTCGAGGAAGAAAATAAGCGGTACGG
CGGAAATATCGCCGCCATGGTACCCGCACGCTGTTGCGGTGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10999:3742..4285+

>mRNA_H-canaliculatus_F_contig10999.913.1 ID=mRNA_H-canaliculatus_F_contig10999.913.1|Name=mRNA_H-canaliculatus_F_contig10999.913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10999:3742..4285+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGACAGAACTGGCAGCCGCCGAAGGCGTGTGGGGTGACAGTTGCCCG
ATTTGAGTTTTATGCGTGCGCTTTCGATGTCCTCGGCCACATGCCTGCTG
CCGTACACAACAGAAACAACATGTCTGGACACGTCTACAACAGGAAGAAG
AAATGGCGGAATACAGAGAAGGGTGCGGTAGCGGTAGAAGCAGTCCACCC
GAGGGCGCACGCCATCGGAGGAAAAACGGTCTGTTCCTGCCCCCCGAATG
AAAAAAACTTCTCGAGGCTTTTCTGCGACATCTATCATGTACGGAGTACT
AGTATCTGGTAGATGGGACAGAACTGGCAGCCGCCGAAGGCGTGTGGGGT
GACAGTTGCCCGATTTGAGTTTTATGCGTGCGCTTTCGATGTCCTCGGCC
ACATGCCTGCTGCCGTACACAACAGAAACAACATGTCTGGACACGTCTAC
AACAGGAAGAAGAAATGGCGGAATACAGAGAAGGGTGCGGTAGCGGTAGA
AGCAGTCCACCCGAGGGCGCACGCCATCGGAGGAAAAACGGTCTGTTCCT
GCCCCCCGAATGAAAAAAACTTCTCGAGGCTTTTCTGCGACATCTATCAT
GTACGGAGTACTAGTATCTGGTAG
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