mRNA_H-canaliculatus_F_contig10992.910.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10992.910.1
Unique NamemRNA_H-canaliculatus_F_contig10992.910.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 6.190e-77
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK
Sbjct: 1442 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 1559
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.910e-59
Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            Y SKAL MFQ +DG EVCLFSMYVQE+GADAP FNARR Y++YLDSVEYFRPR  RT VYHEIL AYLDW RRRGF+ AHIWSCPPQRGNNFIFW HP HQKTPTR+RL  WY  ML+
Sbjct:  474 YASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFIFWAHPEHQKTPTRERLMTWYRLMLR 591
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A7S2C9K0_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K0_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.770e-52
Identity = 80/117 (68.38%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            Y SKA+ MFQ   G+++C+FSMYVQEYG+ AP  N    YISYLDSVEYFRPR  RTAVYHEILV+Y  W+R+RGF  AH+W+CPPQRGNNFIFWCHP HQ+TP++DRL  WY  ML
Sbjct:  716 YGSKAILMFQNCGGIDICIFSMYVQEYGSSAPVSNHGHVYISYLDSVEYFRPRTARTAVYHEILVSYFGWVRKRGFHTAHLWACPPQRGNNFIFWCHPQHQRTPSKDRLLAWYRAML 832
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: F0YM02_AURAN (Histone acetyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM02_AURAN)

HSP 1 Score: 178 bits (451), Expect = 1.690e-50
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            + S+++ +FQ+ DGV++C+FSMYV E+G DA   +A+R Y++YLDSVEYFRPR  RT VYHE+LVAYLDW RRRGF AAHIW+CPPQRGNNFIFWCHP HQ+TP+R+RL+ WY  M++
Sbjct:   63 FESRSVVLFQKNDGVDLCVFSMYVHEFG-DACGPSAKRVYVAYLDSVEYFRPRTARTEVYHELLVAYLDWSRRRGFTAAHIWACPPQRGNNFIFWCHPTHQRTPSRERLTEWYRAMVR 179
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A8J2T1L7_9STRA (Histone acetyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.460e-47
Identity = 76/117 (64.96%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            Y S+A+ +FQ++DG +V +FSMYV E+   A   +A R Y++YLDSVEYFRPR  RT VYHE+LVAYLDW R RGF AAHIW+CPPQRGNNFIFWCHP HQ+TP+R+RL+ WY  M+
Sbjct:  443 YESRAVVLFQKLDGCDVMVFSMYVHEFPTAAGGPSAGRVYVAYLDSVEYFRPRTARTEVYHELLVAYLDWSRGRGFDAAHIWACPPQRGNNFIFWCHPQHQRTPSRERLTEWYRAMV 559
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: S5RK37_ARTPA (Histone acetyltransferase (Fragment) n=1 Tax=Artemia parthenogenetica TaxID=6663 RepID=S5RK37_ARTPA)

HSP 1 Score: 155 bits (392), Expect = 5.120e-46
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            YR+KAL  FQ +DGV+VC F M+VQEYG+D+P  N RR Y++YLDSV +FRP+  RTAVYHEIL+ YLD++++ G+  AHIW+CPP  G+++IF CHP  QK P   RL  WY  ML
Sbjct:   23 YRAKALFAFQDIDGVDVCFFGMHVQEYGSDSPMPNTRRVYLAYLDSVHFFRPKPLRTAVYHEILLGYLDYVKQLGYTMAHIWACPPSEGDDYIFHCHPPEQKIPKPKRLQEWYKKML 139
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A7R9U6P2_9STRA (Histone acetyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6P2_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.630e-46
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 1 
Query:    7 SKALSMFQRVDGVEVCLFSMYVQEYG-AD---------APYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK 354
            SK L  FQR++GV+VC FS+YVQEYG AD         A + + RR YI+YLDSVEYFRPR  RT VYHEIL AYL W R RGF+ AHIW+CPPQRGNNFIFWCHP HQ+TPT++RL+ WY  + +
Sbjct:  459 SKNLLAFQRINGVDVCQFSLYVQEYGVADGAAGXXXXAAAHPSERRVYIAYLDSVEYFRPRAARTEVYHEILSAYLFWARLRGFQRAHIWACPPQRGNNFIFWCHPAHQRTPTKERLTEWYRKLFR 584
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A2L0B3Z3_9COLE (Histone acetyltransferase (Fragment) n=1 Tax=Anacaena pui TaxID=2055702 RepID=A0A2L0B3Z3_9COLE)

HSP 1 Score: 157 bits (397), Expect = 5.870e-46
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            YR+KAL  F+ +DG +VC F M+VQEYG+D P  N RR YI+YLDSV +F+PR+ RTAVYHEIL+ Y+D++++ G+  AHIW+CPP  G+++IF CHPL QK P   RL  WY  ML
Sbjct:  114 YRAKALFAFEEIDGTDVCFFGMHVQEYGSDCPAPNTRRVYIAYLDSVHFFKPRQFRTAVYHEILLGYMDYVKQLGYTMAHIWACPPSEGDDYIFHCHPLEQKIPKPKRLQDWYKKML 230
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A2L0B3Y1_9CUCU (Histone acetyltransferase (Fragment) n=63 Tax=Polyphaga TaxID=41084 RepID=A0A2L0B3Y1_9CUCU)

HSP 1 Score: 157 bits (398), Expect = 9.250e-46
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNML 351
            YR+KAL  F+ +DGV+VC F M+VQEYG+D P  N RR YI+YLDSV +F+PR++RTAVYHEIL+ Y+D++++ G+  AHIW+CPP  G+++IF CHP  QK P   RL  WY  ML
Sbjct:  114 YRAKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYIAYLDSVHFFKPRQYRTAVYHEILLGYMDYVKQLGYTMAHIWACPPSEGDDYIFHCHPAEQKIPKPKRLQDWYKKML 230
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BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Match: A0A7S1U9I3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9I3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 9.580e-46
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 YRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNA------RRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWY 339
            Y SK + +FQR++G++VC FS+YVQEYG    Y +A      RR YI+YLDSVEYFRPR  RTAVY E+L +YL W R RGF+ AHIW+CPPQRGNNFIFWCHP HQ+TPT++RL  WY
Sbjct:  753 YVSKNVLLFQRINGLDVCQFSLYVQEYGRGEEYGSAGAHPSQRRVYIAYLDSVEYFRPRTARTAVYQEVLSSYLAWARARGFRQAHIWACPPQRGNNFIFWCHPSHQRTPTKERLVEWY 871
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10992.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V8_9PHAE6.190e-77100.00Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A835ZGH1_9STRA1.910e-5978.81Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A7S2C9K0_9STRA6.770e-5268.38Histone acetyltransferase (Fragment) n=1 Tax=Dicty... [more]
F0YM02_AURAN1.690e-5066.10Histone acetyltransferase n=1 Tax=Aureococcus anop... [more]
A0A8J2T1L7_9STRA4.460e-4764.96Histone acetyltransferase n=2 Tax=Pelagomonas calc... [more]
S5RK37_ARTPA5.120e-4658.12Histone acetyltransferase (Fragment) n=1 Tax=Artem... [more]
A0A7R9U6P2_9STRA5.630e-4663.49Histone acetyltransferase n=1 Tax=Pinguiococcus py... [more]
A0A2L0B3Z3_9COLE5.870e-4657.26Histone acetyltransferase (Fragment) n=1 Tax=Anaca... [more]
A0A2L0B3Y1_9CUCU9.250e-4657.26Histone acetyltransferase (Fragment) n=63 Tax=Poly... [more]
A0A7S1U9I3_9STRA9.580e-4663.87Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10992contigH-canaliculatus_F_contig10992:1607..2595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue4.3e-42
Seed eggNOG ortholog44056.XP_009041414.1
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10992.910.1prot_H-canaliculatus_F_contig10992.910.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10992 1607..2574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.53605-CDS-H-canaliculatus_F_contig10992:1606..18241622928771.53605-CDS-H-canaliculatus_F_contig10992:1606..1824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10992 1607..1824 -
1696845557.5813446-CDS-H-canaliculatus_F_contig10992:1606..18241696845557.5813446-CDS-H-canaliculatus_F_contig10992:1606..1824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10992 1607..1824 -
1622928771.5547981-CDS-H-canaliculatus_F_contig10992:2456..25741622928771.5547981-CDS-H-canaliculatus_F_contig10992:2456..2574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10992 2457..2574 -
1696845557.5926032-CDS-H-canaliculatus_F_contig10992:2456..25741696845557.5926032-CDS-H-canaliculatus_F_contig10992:2456..2574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10992 2457..2574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.5697439-UTR-H-canaliculatus_F_contig10992:2574..25951622928771.5697439-UTR-H-canaliculatus_F_contig10992:2574..2595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10992 2575..2595 -
1696845557.6019828-UTR-H-canaliculatus_F_contig10992:2574..25951696845557.6019828-UTR-H-canaliculatus_F_contig10992:2574..2595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10992 2575..2595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10992.910.1

>prot_H-canaliculatus_F_contig10992.910.1 ID=prot_H-canaliculatus_F_contig10992.910.1|Name=mRNA_H-canaliculatus_F_contig10992.910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRT
AVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRD
RLSGWYGNMLK*
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mRNA from alignment at H-canaliculatus_F_contig10992:1607..2595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10992.910.1 ID=mRNA_H-canaliculatus_F_contig10992.910.1|Name=mRNA_H-canaliculatus_F_contig10992.910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=989bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10992:1607..2595- (Hapterophycus canaliculatus Oshoro5f female)
TACCGAAGCAAGGCGCTGTCGATGTTCCAGCGGGTGGACGGGGTCGAGGT
TTGCCTTTTCTCCATGTACGTGCAGGAGTACGGGGCGGACGCTCCCTACT
TCAACGCGCGACGTGCCTACATCTCCTATCTTGACTCAGGTGACTGCGAG
TATATATTTTTTTCTTCTTGTTTTCCGTCGCACCCGCGTCGTCGTGGAAC
GGCGTCTATCTTGTTGCCGGCCGTTCCCACCGGGTGACCCTGAACTCGGT
CCCCGACTCGAGGTTTAGGTTTTTCCTTGACGGCGGGTTGTTCCGGCGCG
GTTTCTGGTGGGGGCGGAGCGCTCGCGGGAGGAGGAAGAAAGTTTTCGTT
GTAGATTGCTGTCTGTGGGTTCGGATGATATTCCCGAGGCATGTTTTCCG
TGGGCGGCGCACGCTTTCCGTGGGTCGTGCAAGCATCGATGGCATGATGA
AGACGGCCTCTGGCGTGAGAGCCCGTGCTGGGGGGGCACGGGGTCACCTC
GTCTAAGTTTGCGTGCTGCCCGCGGGTCTTGACGATGTTAGCGAGGCGTT
CTCTCCTTGGGTGGCGTAACCATCGATGGCGGGAGGAAGACGGCCTTTCG
AGCGAGAGCTCGTGCTTGAAGACTTCAACCTTTTCTTTATTTTTTCTCTC
TTTTAGGCAGACGCCTTTCGCTCGTCATTGATCCTGTCCTCTTTTGTCTT
TTGTGCTGCTGCTGCTGCTACTGCTGCTGCCGTCGTTGTTGTCATCCTCG
TCGTGATGGTTGTTCCTGCAGTGGAGTACTTCCGGCCGAGGAAGCACCGG
ACCGCGGTGTACCACGAGATCCTGGTGGCGTACCTGGACTGGCTCCGACG
CCGAGGGTTTAAGGCTGCGCACATCTGGAGCTGTCCGCCGCAGCGGGGCA
ACAACTTCATCTTCTGGTGCCACCCCCTGCACCAGAAGACGCCTACCCGC
GACCGACTTTCGGGCTGGTACGGGAACATGCTCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10992:1607..2595-

>mRNA_H-canaliculatus_F_contig10992.910.1 ID=mRNA_H-canaliculatus_F_contig10992.910.1|Name=mRNA_H-canaliculatus_F_contig10992.910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10992:1607..2595- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCCAGCGGGTGGACGGGGTCGAGGTTTGCCTTTTCTCCATGTACGT
GCAGGAGTACGGGGCGGACGCTCCCTACTTCAACGCGCGACGTGCCTACA
TCTCCTATCTTGACTCAGATGTTCCAGCGGGTGGACGGGGTCGAGGTTTG
CCTTTTCTCCATGTACGTGCAGGAGTACGGGGCGGACGCTCCCTACTTCA
ACGCGCGACGTGCCTACATCTCCTATCTTGACTCAGTGGAGTACTTCCGG
CCGAGGAAGCACCGGACCGCGGTGTACCACGAGATCCTGGTGGCGTACCT
GGACTGGCTCCGACGCCGAGGGTTTAAGGCTGCGCACATCTGGAGCTGTC
CGCCGCAGCGGGGCAACAACTTCATCTTCTGGTGCCACCCCCTGCACCAG
AAGACGCCTACCCGCGACCGACTTTCGGGCTGGTACGGGAACATGCTCAA
GTGATGGAGTACTTCCGGCCGAGGAAGCACCGGACCGCGGTGTACCACGA
GATCCTGGTGGCGTACCTGGACTGGCTCCGACGCCGAGGGTTTAAGGCTG
CGCACATCTGGAGCTGTCCGCCGCAGCGGGGCAACAACTTCATCTTCTGG
TGCCACCCCCTGCACCAGAAGACGCCTACCCGCGACCGACTTTCGGGCTG
GTACGGGAACATGCTCAAGTGA
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