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Homology
BLAST of mRNA_H-canaliculatus_F_contig10990.909.1 vs. uniprot
Match: D8LD72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD72_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 5.650e-133 Identity = 385/777 (49.55%), Postives = 430/777 (55.34%), Query Frame = 1
Query: 1 QLRSVECTCLYVCRESRRQVSRRVRVTPETPRTLW------------------DAGGPAAEVGNESGGKNKSSSSSSTVHSCAPTGSERKRAAGAGSAHKFSWHSKPGEKGPDAIVVAVASSTRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGYKRGCGTRVPLVRTVGIIWQLPATELLSPAFAWPRGVKDVQFGAMFDDRLHDVSFPEKLETLTFGHRFNKSLGPGCVRWPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQGGDGIGLPSGLREIHLGGVFNQSLAGVEWPPTLRKLTFSEYFDKSIEYAADESGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPFAAPGPGSSYAPGATGSDVSGSRSGPTGTPSTRSCRSYLLPPGLRVLTLGDDYDHPMNGGELPDSLTRLVIGKSFSFTSSVRWPAQLKRLELACRWG--------GGGG-----RSSAWLTLPSGLEYLDVGDRFNSPLDGISFXXXXXXXXXXXXXXXXXXHPVYSRAVSVAFRGGNDRARRNDPD-------------------------------------VPLPPPLLPDGLEHLRLGSAFNRKIEHARLPRRLKRLVFAAASIFNQPVVGVVWXXXXXXXXXXXXXXXXXXNAGEFAVDGVGDADGGRDHGGWGCVGGSVLALPATLRELHFGWAFSYSLQGLVLPPSLRRLFFSMRYPMSHVRGLEWPPSLRSISIGMFEFGCREDVVKGGIESLF 2127
QLRS+EC+CLYVCRESRRQV+RRVRVT TPRTLW A G A G+ +G ++ GS R HKFSWH + + XXXXXXXXX XXXXX TRVPLVR VGIIWQLPA ELL F WPRGVK++ FGA FD++++ V FPE LE LTFG+ FN+SLGPG VR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PL+GG GIGLP LRE+HLGGVFNQ L GVEWP +L KLT SEYF++S+ Y XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y+HP+ GGELPD L +LVIG+SFSF SSVRWPA+L+RLEL+CRWG GGGG R S L+LP LEYLD GD FNS LD +S H S P+PPPLLP GLE LRLG+AFNR++E ARLP RLKRLVF A S F++PV GV WXXXXXXXXXXXXXXX + G+GD DG GG G S L LPATLRELHFGWAFS+SLQGL LP LRRL F RYP+SHVRGLEWPPSLRSI +G F FG R+DV K + F
Sbjct: 25 QLRSLECSCLYVCRESRRQVARRVRVTDGTPRTLWRVDRRRFSAETAGSGGHSGAQGDGARGGSGAGPSKRAXXXXXXXXXXXCVGS-RTXXXXXXXQHKFSWHGR-------SXXXXXXXXXXXXXXXXXXXXXSIRGPATGTAAXXXXXASTLPATPTPARATTRVPLVRAVGIIWQLPALELLEAGFGWPRGVKELHFGAKFDEKVNAVEFPETLEALTFGYWFNESLGPGRVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLRGGGGIGLPPRLREVHLGGVFNQPLDGVEWPASLEKLTLSEYFNQSLGYGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------XXXXXXXXXXXXXXXYNHPLAGGELPDGLEKLVIGQSFSFVSSVRWPAELRRLELSCRWGDALFAGSLGGGGSRRQRRPSCCLSLPKRLEYLDAGDGFNSALDTVSLPASLRVLILGSAFNYPLDHANSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPVPPPLLPGGLEELRLGAAFNRELEAARLPERLKRLVFVAESKFDRPVAGVRWXXXXXXXXXXXXXXXPMES-------GIGDFDGLGSGGG----GDSALMLPATLRELHFGWAFSHSLQGLALPRGLRRLSFFARYPVSHVRGLEWPPSLRSIHVGSFRFGSRKDVAKWAAQPPF 735
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 419.5 |
Seed ortholog evalue | 3.2e-114 |
Seed eggNOG ortholog | 2880.D8LD72 |
EggNOG free text desc. | FNIP Repeat |
EggNOG OGs | 2E9BD@1,2SFQ3@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-05_001550.1 |
Exons | 1 |
Model size | 2130 |
Cds size | 2130 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928771.48309-CDS-H-canaliculatus_F_contig10990:406..2536 | 1622928771.48309-CDS-H-canaliculatus_F_contig10990:406..2536 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10990 407..2536 - |
1696845557.5694594-CDS-H-canaliculatus_F_contig10990:406..2536 | 1696845557.5694594-CDS-H-canaliculatus_F_contig10990:406..2536 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10990 407..2536 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10990.909.1 >prot_H-canaliculatus_F_contig10990.909.1 ID=prot_H-canaliculatus_F_contig10990.909.1|Name=mRNA_H-canaliculatus_F_contig10990.909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=710bp
QLRSVECTCLYVCRESRRQVSRRVRVTPETPRTLWDAGGPAAEVGNESGG KNKSSSSSSTVHSCAPTGSERKRAAGAGSAHKFSWHSKPGEKGPDAIVVA VASSTRGAGPPAAARPPPTPHAAAALPPPAPAPVAAAAAAGYKRGCGTRV PLVRTVGIIWQLPATELLSPAFAWPRGVKDVQFGAMFDDRLHDVSFPEKL ETLTFGHRFNKSLGPGCVRWPAGLKRLKLGATWNRRLTGCRGSWPASLEV LHFGTSFDKPLQGGDGIGLPSGLREIHLGGVFNQSLAGVEWPPTLRKLTF SEYFDKSIEYAADESGVFFPSGVREMSFGGRYDREVARVAWPEGLRSLAF GDKFNKPFAAPGPGSSYAPGATGSDVSGSRSGPTGTPSTRSCRSYLLPPG LRVLTLGDDYDHPMNGGELPDSLTRLVIGKSFSFTSSVRWPAQLKRLELA CRWGGGGGRSSAWLTLPSGLEYLDVGDRFNSPLDGISFPASLRVLIFGSE FNHPLDHPVYSRAVSVAFRGGNDRARRNDPDVPLPPPLLPDGLEHLRLGS AFNRKIEHARLPRRLKRLVFAAASIFNQPVVGVVWPPALEELRFGNCFNQ PVENAGEFAVDGVGDADGGRDHGGWGCVGGSVLALPATLRELHFGWAFSY SLQGLVLPPSLRRLFFSMRYPMSHVRGLEWPPSLRSISIGMFEFGCREDV VKGGIESLF* back to topmRNA from alignment at H-canaliculatus_F_contig10990:407..2536- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10990.909.1 ID=mRNA_H-canaliculatus_F_contig10990.909.1|Name=mRNA_H-canaliculatus_F_contig10990.909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2130bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10990:407..2536- (Hapterophycus canaliculatus Oshoro5f female) CAGCTTCGTTCCGTGGAGTGCACGTGCCTCTACGTGTGCCGCGAATCTAG
GCGCCAGGTGTCGCGCAGAGTCCGAGTGACGCCCGAGACACCCCGCACAC
TCTGGGACGCTGGCGGGCCTGCAGCAGAGGTTGGCAACGAAAGCGGCGGC
AAAAACAAGAGCAGTAGCAGCAGCAGCACTGTTCATAGCTGCGCCCCGAC
GGGGTCCGAGAGGAAGCGGGCGGCGGGCGCGGGCAGCGCGCACAAGTTCT
CGTGGCACAGCAAACCCGGTGAAAAAGGTCCGGATGCCATCGTCGTCGCC
GTTGCCTCAAGCACCCGTGGCGCTGGGCCCCCAGCAGCCGCTCGTCCCCC
TCCCACTCCTCATGCGGCTGCAGCACTCCCACCGCCTGCTCCTGCCCCTG
TGGCGGCCGCCGCCGCCGCCGGGTATAAGCGCGGTTGCGGGACAAGGGTG
CCCTTGGTCAGGACCGTCGGCATCATCTGGCAGCTCCCCGCGACGGAGCT
TCTCTCTCCCGCGTTCGCGTGGCCTAGAGGCGTGAAAGACGTGCAGTTCG
GAGCGATGTTTGACGACCGGCTGCACGACGTGTCCTTCCCGGAGAAACTC
GAGACGCTTACTTTCGGGCACCGGTTCAACAAGTCGCTGGGGCCTGGGTG
TGTGCGGTGGCCGGCCGGGTTGAAACGGCTCAAGTTGGGGGCGACGTGGA
ACAGGCGTCTCACCGGATGTCGAGGAAGCTGGCCAGCCTCCCTCGAAGTC
TTGCACTTCGGAACGAGTTTCGACAAGCCGCTGCAGGGAGGGGATGGAAT
CGGGCTGCCCTCAGGCTTGCGGGAAATCCACCTGGGAGGCGTGTTCAATC
AGTCGCTGGCAGGGGTGGAGTGGCCCCCGACGCTGCGGAAGCTGACGTTC
TCCGAGTACTTCGACAAGTCCATCGAGTACGCCGCCGACGAGAGCGGCGT
CTTCTTCCCGAGCGGCGTGCGGGAGATGTCTTTCGGCGGGAGGTACGACC
GGGAGGTCGCTCGCGTGGCGTGGCCCGAGGGCCTGAGGTCTCTCGCATTC
GGGGACAAGTTCAACAAGCCGTTCGCTGCCCCCGGCCCCGGCTCCAGCTA
CGCGCCTGGCGCCACGGGGAGCGACGTCAGCGGTTCCCGGAGCGGGCCGA
CAGGTACCCCTTCGACTCGCTCGTGTCGTTCCTACTTGCTCCCGCCAGGG
CTCCGGGTTCTCACTCTCGGGGACGACTACGACCACCCCATGAACGGGGG
CGAGCTGCCCGACAGCCTGACGAGGCTAGTGATCGGCAAGTCGTTCTCTT
TCACGTCGTCGGTGCGTTGGCCGGCACAGTTGAAGCGGCTCGAGCTGGCA
TGCAGGTGGGGCGGCGGTGGCGGCAGGTCTTCCGCCTGGTTGACGCTCCC
GAGTGGGCTTGAGTACCTCGACGTCGGCGACCGCTTCAACTCTCCCCTCG
ACGGAATCTCATTTCCGGCGAGCTTGAGGGTGCTGATCTTCGGTTCTGAG
TTCAACCATCCTCTAGACCACCCGGTTTACAGCCGGGCCGTTAGCGTCGC
CTTCCGAGGTGGAAACGATAGAGCACGAAGAAACGACCCTGACGTGCCCT
TGCCGCCCCCGCTACTCCCCGACGGGCTAGAGCACCTGCGGCTAGGGTCA
GCCTTCAATCGCAAGATCGAGCACGCCCGGCTCCCACGGCGGCTGAAACG
CCTCGTTTTCGCCGCCGCCTCCATCTTCAACCAGCCGGTCGTCGGGGTCG
TGTGGCCCCCGGCCCTGGAGGAGCTCCGGTTCGGGAACTGCTTCAACCAG
CCGGTGGAGAACGCCGGCGAGTTCGCCGTCGACGGCGTCGGTGACGCTGA
TGGAGGCCGCGATCACGGCGGATGGGGCTGCGTCGGCGGCTCCGTTTTGG
CGCTTCCGGCCACCCTGCGGGAGCTCCACTTCGGGTGGGCGTTCTCGTAC
TCCCTACAGGGGCTGGTGCTGCCGCCTAGCCTGAGACGGTTGTTCTTCAG
CATGCGGTACCCCATGTCGCACGTACGAGGCCTGGAGTGGCCTCCGTCTT
TGCGGAGCATCAGTATCGGTATGTTCGAGTTCGGCTGTCGCGAAGATGTG
GTGAAAGGGGGTATCGAGTCCCTGTTTTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10990:407..2536- >mRNA_H-canaliculatus_F_contig10990.909.1 ID=mRNA_H-canaliculatus_F_contig10990.909.1|Name=mRNA_H-canaliculatus_F_contig10990.909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10990:407..2536- (Hapterophycus canaliculatus Oshoro5f female) CAGCTTCGTTCCGTGGAGTGCACGTGCCTCTACGTGTGCCGCGAATCTAG GCGCCAGGTGTCGCGCAGAGTCCGAGTGACGCCCGAGACACCCCGCACAC TCTGGGACGCTGGCGGGCCTGCAGCAGAGGTTGGCAACGAAAGCGGCGGC AAAAACAAGAGCAGTAGCAGCAGCAGCACTGTTCATAGCTGCGCCCCGAC GGGGTCCGAGAGGAAGCGGGCGGCGGGCGCGGGCAGCGCGCACAAGTTCT CGTGGCACAGCAAACCCGGTGAAAAAGGTCCGGATGCCATCGTCGTCGCC GTTGCCTCAAGCACCCGTGGCGCTGGGCCCCCAGCAGCCGCTCGTCCCCC TCCCACTCCTCATGCGGCTGCAGCACTCCCACCGCCTGCTCCTGCCCCTG TGGCGGCCGCCGCCGCCGCCGGGTATAAGCGCGGTTGCGGGACAAGGGTG CCCTTGGTCAGGACCGTCGGCATCATCTGGCAGCTCCCCGCGACGGAGCT TCTCTCTCCCGCGTTCGCGTGGCCTAGAGGCGTGAAAGACGTGCAGTTCG GAGCGATGTTTGACGACCGGCTGCACGACGTGTCCTTCCCGGAGAAACTC GAGACGCTTACTTTCGGGCACCGGTTCAACAAGTCGCTGGGGCCTGGGTG TGTGCGGTGGCCGGCCGGGTTGAAACGGCTCAAGTTGGGGGCGACGTGGA ACAGGCGTCTCACCGGATGTCGAGGAAGCTGGCCAGCCTCCCTCGAAGTC TTGCACTTCGGAACGAGTTTCGACAAGCCGCTGCAGGGAGGGGATGGAAT CGGGCTGCCCTCAGGCTTGCGGGAAATCCACCTGGGAGGCGTGTTCAATC AGTCGCTGGCAGGGGTGGAGTGGCCCCCGACGCTGCGGAAGCTGACGTTC TCCGAGTACTTCGACAAGTCCATCGAGTACGCCGCCGACGAGAGCGGCGT CTTCTTCCCGAGCGGCGTGCGGGAGATGTCTTTCGGCGGGAGGTACGACC GGGAGGTCGCTCGCGTGGCGTGGCCCGAGGGCCTGAGGTCTCTCGCATTC GGGGACAAGTTCAACAAGCCGTTCGCTGCCCCCGGCCCCGGCTCCAGCTA CGCGCCTGGCGCCACGGGGAGCGACGTCAGCGGTTCCCGGAGCGGGCCGA CAGGTACCCCTTCGACTCGCTCGTGTCGTTCCTACTTGCTCCCGCCAGGG CTCCGGGTTCTCACTCTCGGGGACGACTACGACCACCCCATGAACGGGGG CGAGCTGCCCGACAGCCTGACGAGGCTAGTGATCGGCAAGTCGTTCTCTT TCACGTCGTCGGTGCGTTGGCCGGCACAGTTGAAGCGGCTCGAGCTGGCA TGCAGGTGGGGCGGCGGTGGCGGCAGGTCTTCCGCCTGGTTGACGCTCCC GAGTGGGCTTGAGTACCTCGACGTCGGCGACCGCTTCAACTCTCCCCTCG ACGGAATCTCATTTCCGGCGAGCTTGAGGGTGCTGATCTTCGGTTCTGAG TTCAACCATCCTCTAGACCACCCGGTTTACAGCCGGGCCGTTAGCGTCGC CTTCCGAGGTGGAAACGATAGAGCACGAAGAAACGACCCTGACGTGCCCT TGCCGCCCCCGCTACTCCCCGACGGGCTAGAGCACCTGCGGCTAGGGTCA GCCTTCAATCGCAAGATCGAGCACGCCCGGCTCCCACGGCGGCTGAAACG CCTCGTTTTCGCCGCCGCCTCCATCTTCAACCAGCCGGTCGTCGGGGTCG TGTGGCCCCCGGCCCTGGAGGAGCTCCGGTTCGGGAACTGCTTCAACCAG CCGGTGGAGAACGCCGGCGAGTTCGCCGTCGACGGCGTCGGTGACGCTGA TGGAGGCCGCGATCACGGCGGATGGGGCTGCGTCGGCGGCTCCGTTTTGG CGCTTCCGGCCACCCTGCGGGAGCTCCACTTCGGGTGGGCGTTCTCGTAC TCCCTACAGGGGCTGGTGCTGCCGCCTAGCCTGAGACGGTTGTTCTTCAG CATGCGGTACCCCATGTCGCACGTACGAGGCCTGGAGTGGCCTCCGTCTT TGCGGAGCATCAGTATCGGTATGTTCGAGTTCGGCTGTCGCGAAGATGTG GTGAAAGGGGGTATCGAGTCCCTGTTTTGACAGCTTCGTTCCGTGGAGTG CACGTGCCTCTACGTGTGCCGCGAATCTAGGCGCCAGGTGTCGCGCAGAG TCCGAGTGACGCCCGAGACACCCCGCACACTCTGGGACGCTGGCGGGCCT GCAGCAGAGGTTGGCAACGAAAGCGGCGGCAAAAACAAGAGCAGTAGCAG CAGCAGCACTGTTCATAGCTGCGCCCCGACGGGGTCCGAGAGGAAGCGGG CGGCGGGCGCGGGCAGCGCGCACAAGTTCTCGTGGCACAGCAAACCCGGT GAAAAAGGTCCGGATGCCATCGTCGTCGCCGTTGCCTCAAGCACCCGTGG CGCTGGGCCCCCAGCAGCCGCTCGTCCCCCTCCCACTCCTCATGCGGCTG CAGCACTCCCACCGCCTGCTCCTGCCCCTGTGGCGGCCGCCGCCGCCGCC GGGTATAAGCGCGGTTGCGGGACAAGGGTGCCCTTGGTCAGGACCGTCGG CATCATCTGGCAGCTCCCCGCGACGGAGCTTCTCTCTCCCGCGTTCGCGT GGCCTAGAGGCGTGAAAGACGTGCAGTTCGGAGCGATGTTTGACGACCGG CTGCACGACGTGTCCTTCCCGGAGAAACTCGAGACGCTTACTTTCGGGCA CCGGTTCAACAAGTCGCTGGGGCCTGGGTGTGTGCGGTGGCCGGCCGGGT TGAAACGGCTCAAGTTGGGGGCGACGTGGAACAGGCGTCTCACCGGATGT CGAGGAAGCTGGCCAGCCTCCCTCGAAGTCTTGCACTTCGGAACGAGTTT CGACAAGCCGCTGCAGGGAGGGGATGGAATCGGGCTGCCCTCAGGCTTGC GGGAAATCCACCTGGGAGGCGTGTTCAATCAGTCGCTGGCAGGGGTGGAG TGGCCCCCGACGCTGCGGAAGCTGACGTTCTCCGAGTACTTCGACAAGTC CATCGAGTACGCCGCCGACGAGAGCGGCGTCTTCTTCCCGAGCGGCGTGC GGGAGATGTCTTTCGGCGGGAGGTACGACCGGGAGGTCGCTCGCGTGGCG TGGCCCGAGGGCCTGAGGTCTCTCGCATTCGGGGACAAGTTCAACAAGCC GTTCGCTGCCCCCGGCCCCGGCTCCAGCTACGCGCCTGGCGCCACGGGGA GCGACGTCAGCGGTTCCCGGAGCGGGCCGACAGGTACCCCTTCGACTCGC TCGTGTCGTTCCTACTTGCTCCCGCCAGGGCTCCGGGTTCTCACTCTCGG GGACGACTACGACCACCCCATGAACGGGGGCGAGCTGCCCGACAGCCTGA CGAGGCTAGTGATCGGCAAGTCGTTCTCTTTCACGTCGTCGGTGCGTTGG CCGGCACAGTTGAAGCGGCTCGAGCTGGCATGCAGGTGGGGCGGCGGTGG CGGCAGGTCTTCCGCCTGGTTGACGCTCCCGAGTGGGCTTGAGTACCTCG ACGTCGGCGACCGCTTCAACTCTCCCCTCGACGGAATCTCATTTCCGGCG AGCTTGAGGGTGCTGATCTTCGGTTCTGAGTTCAACCATCCTCTAGACCA CCCGGTTTACAGCCGGGCCGTTAGCGTCGCCTTCCGAGGTGGAAACGATA GAGCACGAAGAAACGACCCTGACGTGCCCTTGCCGCCCCCGCTACTCCCC GACGGGCTAGAGCACCTGCGGCTAGGGTCAGCCTTCAATCGCAAGATCGA GCACGCCCGGCTCCCACGGCGGCTGAAACGCCTCGTTTTCGCCGCCGCCT CCATCTTCAACCAGCCGGTCGTCGGGGTCGTGTGGCCCCCGGCCCTGGAG GAGCTCCGGTTCGGGAACTGCTTCAACCAGCCGGTGGAGAACGCCGGCGA GTTCGCCGTCGACGGCGTCGGTGACGCTGATGGAGGCCGCGATCACGGCG GATGGGGCTGCGTCGGCGGCTCCGTTTTGGCGCTTCCGGCCACCCTGCGG GAGCTCCACTTCGGGTGGGCGTTCTCGTACTCCCTACAGGGGCTGGTGCT GCCGCCTAGCCTGAGACGGTTGTTCTTCAGCATGCGGTACCCCATGTCGC ACGTACGAGGCCTGGAGTGGCCTCCGTCTTTGCGGAGCATCAGTATCGGT ATGTTCGAGTTCGGCTGTCGCGAAGATGTGGTGAAAGGGGGTATCGAGTC CCTGTTTTGA back to top
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