mRNA_H-canaliculatus_F_contig1099.907.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1099.907.1
Unique NamemRNA_H-canaliculatus_F_contig1099.907.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1099.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1099contigH-canaliculatus_F_contig1099:18344..18918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1099.907.1prot_H-canaliculatus_F_contig1099.907.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1099 18385..18876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.1043477-UTR-H-canaliculatus_F_contig1099:18343..183841622928771.1043477-UTR-H-canaliculatus_F_contig1099:18343..18384Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 18344..18384 +
1696845557.4088075-UTR-H-canaliculatus_F_contig1099:18343..183841696845557.4088075-UTR-H-canaliculatus_F_contig1099:18343..18384Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 18344..18384 +
1622928771.135097-UTR-H-canaliculatus_F_contig1099:18876..189181622928771.135097-UTR-H-canaliculatus_F_contig1099:18876..18918Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 18877..18918 +
1696845557.4267635-UTR-H-canaliculatus_F_contig1099:18876..189181696845557.4267635-UTR-H-canaliculatus_F_contig1099:18876..18918Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 18877..18918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.120182-CDS-H-canaliculatus_F_contig1099:18384..188761622928771.120182-CDS-H-canaliculatus_F_contig1099:18384..18876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 18385..18876 +
1696845557.4179668-CDS-H-canaliculatus_F_contig1099:18384..188761696845557.4179668-CDS-H-canaliculatus_F_contig1099:18384..18876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 18385..18876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1099.907.1

>prot_H-canaliculatus_F_contig1099.907.1 ID=prot_H-canaliculatus_F_contig1099.907.1|Name=mRNA_H-canaliculatus_F_contig1099.907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MKRCSCGLESQGSPSGTPEGLETRHQLRKLRVCAFVARNNTGRREREVDA
RCSACVEMERGSRTALWWSLQSCIEFCRLLNGQKQLLRTPALPQHWVRMV
VRPRSDANICARWLETGYRFRGLVRRSSLLLLSRGLVVVAVVVVLVILAL
LLLPSSHLDLEIL*
back to top

mRNA from alignment at H-canaliculatus_F_contig1099:18344..18918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1099.907.1 ID=mRNA_H-canaliculatus_F_contig1099.907.1|Name=mRNA_H-canaliculatus_F_contig1099.907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=575bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1099:18344..18918+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGCTTTGATGCTTTGCCCTTACCATGCGTTTCATGTCGAATGAAACGG
TGCTCGTGCGGCTTAGAGTCCCAAGGATCACCGTCCGGCACACCGGAAGG
ACTTGAAACGCGACATCAGCTCCGAAAACTACGTGTGTGTGCGTTTGTAG
CTCGTAATAACACCGGACGCCGAGAGCGAGAGGTTGATGCAAGGTGTTCG
GCGTGTGTGGAGATGGAGCGAGGATCACGCACGGCACTCTGGTGGTCGCT
ACAGAGCTGCATCGAGTTTTGCAGGCTACTTAACGGACAAAAACAGCTGC
TTCGCACCCCAGCACTGCCACAGCACTGGGTACGGATGGTAGTTCGTCCT
CGTTCAGATGCCAATATTTGTGCCCGTTGGTTGGAGACAGGTTATCGCTT
TCGCGGGCTGGTTCGTCGCTCATCTTTGTTGTTGCTGTCGCGAGGGTTGG
TTGTGGTGGCCGTTGTTGTGGTGCTGGTGATACTGGCGCTACTTTTGCTG
CCTTCTTCTCACCTTGATTTGGAGATACTGTAGCTCGAGACTTGAAGAAA
GTGTCGTGGTGCTTGACTTTCACGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1099:18344..18918+

>mRNA_H-canaliculatus_F_contig1099.907.1 ID=mRNA_H-canaliculatus_F_contig1099.907.1|Name=mRNA_H-canaliculatus_F_contig1099.907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1099:18344..18918+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAACGGTGCTCGTGCGGCTTAGAGTCCCAAGGATCACCGTCCGGCAC
ACCGGAAGGACTTGAAACGCGACATCAGCTCCGAAAACTACGTGTGTGTG
CGTTTGTAGCTCGTAATAACACCGGACGCCGAGAGCGAGAGGTTGATGCA
AGGTGTTCGGCGTGTGTGGAGATGGAGCGAGGATCACGCACGGCACTCTG
GTGGTCGCTACAGAGCTGCATCGAGTTTTGCAGGCTACTTAACGGACAAA
AACAGCTGCTTCGCACCCCAGCACTGCCACAGCACTGGGTACGGATGGTA
GTTCGTCCTCGTTCAGATGCCAATATTTGTGCCCGTTGGTTGGAGACAGG
TTATCGCTTTCGCGGGCTGGTTCGTCGCTCATCTTTGTTGTTGCTGTCGC
GAGGGTTGGTTGTGGTGGCCGTTGTTGTGGTGCTGGTGATACTGGCGCTA
CTTTTGCTGCCTTCTTCTCACCTTGATTTGGAGATACTGTAGATGAAACG
GTGCTCGTGCGGCTTAGAGTCCCAAGGATCACCGTCCGGCACACCGGAAG
GACTTGAAACGCGACATCAGCTCCGAAAACTACGTGTGTGTGCGTTTGTA
GCTCGTAATAACACCGGACGCCGAGAGCGAGAGGTTGATGCAAGGTGTTC
GGCGTGTGTGGAGATGGAGCGAGGATCACGCACGGCACTCTGGTGGTCGC
TACAGAGCTGCATCGAGTTTTGCAGGCTACTTAACGGACAAAAACAGCTG
CTTCGCACCCCAGCACTGCCACAGCACTGGGTACGGATGGTAGTTCGTCC
TCGTTCAGATGCCAATATTTGTGCCCGTTGGTTGGAGACAGGTTATCGCT
TTCGCGGGCTGGTTCGTCGCTCATCTTTGTTGTTGCTGTCGCGAGGGTTG
GTTGTGGTGGCCGTTGTTGTGGTGCTGGTGATACTGGCGCTACTTTTGCT
GCCTTCTTCTCACCTTGATTTGGAGATACTGTAG
back to top