mRNA_H-canaliculatus_F_contig10986.903.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10986.903.1
Unique NamemRNA_H-canaliculatus_F_contig10986.903.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10986.903.1 vs. uniprot
Match: K9L3S4_MAGMU (Uncharacterized protein n=1 Tax=Magnusiomyces magnusii TaxID=43963 RepID=K9L3S4_MAGMU)

HSP 1 Score: 56.2 bits (134), Expect = 3.380e-9
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VSDYLEFTIAIHTDSIELEGGVKLNSDMVDNKEIGKFKLEAEKDIAL 141
            + DY+++  A+HTD+IE+  G+KL  +M+ N EIGKFKLEA +D+ +
Sbjct:   26 IKDYIKYVAAVHTDAIEMVDGMKLPDEMIHNTEIGKFKLEATRDLGI 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10986.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K9L3S4_MAGMU3.380e-948.94Uncharacterized protein n=1 Tax=Magnusiomyces magn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10986contigH-canaliculatus_F_contig10986:3807..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.8842957-CDS-H-canaliculatus_F_contig10986:3806..39471622928770.8842957-CDS-H-canaliculatus_F_contig10986:3806..3947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10986 3807..3947 -
1696845557.3547215-CDS-H-canaliculatus_F_contig10986:3806..39471696845557.3547215-CDS-H-canaliculatus_F_contig10986:3806..3947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10986 3807..3947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10986.903.1prot_H-canaliculatus_F_contig10986.903.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10986 3807..3947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10986.903.1

>prot_H-canaliculatus_F_contig10986.903.1 ID=prot_H-canaliculatus_F_contig10986.903.1|Name=mRNA_H-canaliculatus_F_contig10986.903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=47bp
VSDYLEFTIAIHTDSIELEGGVKLNSDMVDNKEIGKFKLEAEKDIAL
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mRNA from alignment at H-canaliculatus_F_contig10986:3807..3947-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10986.903.1 ID=mRNA_H-canaliculatus_F_contig10986.903.1|Name=mRNA_H-canaliculatus_F_contig10986.903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10986:3807..3947- (Hapterophycus canaliculatus Oshoro5f female)
GTTAGCGATTATTTAGAGTTTACAATAGCTATACATACTGATTCAATAGA
ATTAGAAGGTGGAGTTAAATTAAATAGTGATATGGTAGATAATAAAGAAA
TAGGTAAATTTAAATTAGAGGCAGAGAAAGACATAGCATTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10986:3807..3947-

>mRNA_H-canaliculatus_F_contig10986.903.1 ID=mRNA_H-canaliculatus_F_contig10986.903.1|Name=mRNA_H-canaliculatus_F_contig10986.903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10986:3807..3947- (Hapterophycus canaliculatus Oshoro5f female)
GTTAGCGATTATTTAGAGTTTACAATAGCTATACATACTGATTCAATAGA
ATTAGAAGGTGGAGTTAAATTAAATAGTGATATGGTAGATAATAAAGAAA
TAGGTAAATTTAAATTAGAGGCAGAGAAAGACATAGCATTGGTTAGCGAT
TATTTAGAGTTTACAATAGCTATACATACTGATTCAATAGAATTAGAAGG
TGGAGTTAAATTAAATAGTGATATGGTAGATAATAAAGAAATAGGTAAAT
TTAAATTAGAGGCAGAGAAAGACATAGCATTG
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