mRNA_H-canaliculatus_F_contig1097.887.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE) HSP 1 Score: 1173 bits (3035), Expect = 0.000e+0 Identity = 736/1169 (62.96%), Postives = 836/1169 (71.51%), Query Frame = 1 Query: 136 APSVSGVLAMSANALEACEDGCVPGLASAFDVQDYLVRCSCPEVR--RRSLGGWMSQGWNSTSVHPTEGGKMNLRRRLVDT-DVVYVVTVPGNTFEGIFQSINHFQNNFQEVPRSLGVPDDEIQFSALEFSATPGAPITETESNTDVQLVVSPPASEASGAAIGMFVLFLLALLLGTCGCLWAMLGFYRQKKRAKRVS-DEYLAAKAVGS-AGSVXXXXXXXXXDDGEYYNNYNPVRTGGMLAPYGRAIAPASIKAISPTPSQTQQTELFTNLLEATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQA-----ATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALREDDEVVRAAHSLRSASSPPSTAQMELPFAGADDTAPSSALSPQGLMSMHDQPFDDQSFSYGESMPGSPGSSLHSSNLLPHTSPSANARAMRQARGGMPDSASGSVITSSSTYTEDERSEIPESPLSRMSAHSYGRSSATSHGHPLVAPRGGAG-------PAEG-QVYDSSTTXXXXXXXXXXX---RGTQ-----------------RRGPI-------GSGGGN------------------------------SSFASSHYNDVYGEDSTGSQTPSSMDSRTPNARDGVVLQNYFSEQPSGRNLLHVLPHGAA---PEAGGGEAEATPGLGTYREAPSGRGLVNDQSGSEYDDGGSXXXXXXXXXXTEISSS----SQSEGSSAWNDTDAQSVPASYGHAGGXXXXXXXXXXXXXXXGAFITEARSAFTTEDAKASDDLGPEPSSPVVREVELYE----DDLTVSEGSAAASRLGYGSEMT----FGHDTAAGSSMRSLDVPRGPSGGASGQQRPGLG---------------RAYGSSGSSVASRVIGLSSELGSNRVIPGQESWRNSPRPGENL---GEMDRAMSGETTDSSALEQQQG-------QEDGDFGTVWLANRAHARQYD-ATQDRG 3294 APSVSGVL M+ A+E CEDGC GLA+AFDVQ YLVRCSCPEV RRSLGGW+++ WNSTSV PTEG LRRRL +T D +VVTVPG T G+ QSIN+FQNN+ V +LGV +++QFS+L+FSAT +PITE SN+DVQLVV+PPAS+AS AA+GMFVLFL+ALLLGTCGCLWA+LGF RQ++RAK S ++ ++K +GS AGSV D+GEYY+N+NP+RTGGMLAP+G+AIAPASIKA+SPTPSQT+QTELFTNL+EATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCE+SHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQA ATD+LSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLG DGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALR+DDEVV AA+SL+S SSP S+ QMELPF GADD PSSA+SPQGLMSMHDQPFDDQS SYG SMPGSPGSSL SSNL + S + AMRQARGG+ DSASGSVITSSS Y+E+E+SE+PESPLSRMS HSYG SS S RG G P + QV++S +T RGT RR + GSG G+ SSFASSHYN+VYG+ S S++S+T D V +NYFSEQPSGRNLLHVL H P G +++ PG+G YRE V+D S S+ D XXXXXXXXXX S+S+ SSAWNDTDAQS XXXXXXXXXXXXXX T ARSA+++ S G +SPVVREV++Y+ + S G+ AASR+ SEMT + HDTAAG S S G SG A +RPG G + YGSS SS+ SRV G SE+GS+R++P Q+SW+NSP PG G ++R +SGETTDSS LEQQ QEDGDFG VWLA+RAHARQ+D A +DRG Sbjct: 1381 APSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEFTRRSLGGWLTEEWNSTSVSPTEGFYY-LRRRLDETSDAGFVVTVPGPTTSGLIQSINYFQNNYGRVSEALGVDSEDVQFSSLQFSATSISPITEEASNSDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRQRRRAKEASRQDFFSSKLMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQATRSRAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGADGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALRDDDEVVGAANSLQSESSPASSTQMELPFQGADDETPSSAMSPQGLMSMHDQPFDDQSLSYG-SMPGSPGSSLLSSNLYTNRSLGGDREAMRQARGGVRDSASGSVITSSSNYSEEEQSEVPESPLSRMSVHSYGPSSMASSAQ--AGGRGSGGVRRHGTSPIDARQVFESGSTTSQSESEERHRGMSRGTSQDSEEVGGGFRSGSGSGRRSGVEGGGFRSGSGSGSXXXXXXXXXXXXXXXXXXXXXXXXLDGLASSSFASSHYNEVYGDSS-------SVESQTQRREDPTV-ENYFSEQPSGRNLLHVLTHQRGERTPRDEGRQSQVGPGIGAYREXXXXXXXVHDPSRSKIDGXXXXXXXXXXXXXXXXXXXXXXXSESDRSSAWNDTDAQSXXXXX------XXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQSGRHG---TSPVVREVDVYDGVSSEASMSSAGTEAASRVQ--SEMTSTSTYDHDTAAGGSTASFQGGGGDSGRA--HRRPGPGVRVPPSPSQPMLGYQQGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAEGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRG 2524
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Match: D8LG77_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI) HSP 1 Score: 1014 bits (2622), Expect = 0.000e+0 Identity = 533/665 (80.15%), Postives = 584/665 (87.82%), Query Frame = 1 Query: 136 APSVSGVLAMSANALEACEDGCVPGLASAFDVQDYLVRCSCPEVR--RRSLGGWMSQGWNSTSVHPTEGGKMNLRRRLVDT-DVVYVVTVPGNTFEGIFQSINHFQNNFQEVPRSLGVPDDEIQFSALEFSATPGAPITETESNTDVQLVVSPPASEASGAAIGMFVLFLLALLLGTCGCLWAMLGFYRQKKRAKRVS-DEYLAAKAVGSA-GSVXXXXXXXXXDDGEYYNNYNPVRTGGMLAPYGRAIAPASIKAISPTPSQTQQTELFTNLLEATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALREDDEVVRAAHSLRSASSPPSTAQMELPFAGADDTAPSSALSPQGLMSMHDQPFDDQSFSYGESMPGSPGSSLHSSNLLPHTSPSANARAMRQARGGMPDSASGSVITSSSTYTEDERSEIPESPLSRMSAHSYGRSSATS 2115 APSVSG L MS A+E CEDGC GLA+AFDVQ YLVRCSCPEV RRSLGGW+++GWNST+V PTEG LRRRL +T D +VVTVPG T G+ QSIN+FQNNF V +LGV + +QFS+L+FSAT +PITE SN DVQLVV+PPAS+AS AA+GMFVLFL+ALLLGTCGCLWA+LGF RQ+ RAK S ++ ++K +GSA GSV D+GEYY+N+NP+RTGGMLAP+G+AIAPASIKA+SPTPSQT+QTELFTNL+EATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCE+SHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAATD+LSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIR KCPQWHEGNVQLMGV LAITFLEYG NSQTLGVD QSTTLDWVHGLQPDDLEKFLAEKK+QRMRVLCLDLEPTGIPQQALR++DEV+RAA+SL+S SSP S+AQMELPF GADD PSSA+SPQGLMSMHDQPFDDQS SYG SMPGSPGSSL SSNL HT N AMRQARGG+ DSASGSVITSSS Y+E+E+SE+PESPLSRMSAHSYG SS S Sbjct: 885 APSVSGALTMSLAAMEQCEDGCEVGLANAFDVQPYLVRCSCPEVEISRRSLGGWLTEGWNSTTVSPTEGSYY-LRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALGVDSENVQFSSLQFSATSFSPITEEASNNDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRQRMRAKEASRKDFFSSKMMGSAAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRGKCPQWHEGNVQLMGVSLAITFLEYGFNSQTLGVDAQSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEVIRAANSLQSESSPTSSAQMELPFQGADDETPSSAMSPQGLMSMHDQPFDDQSLSYG-SMPGSPGSSLLSSNL--HT----NREAMRQARGGVRDSASGSVITSSSNYSEEEQSEVPESPLSRMSAHSYGPSSMAS 1541
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Match: D7G150_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G150_ECTSI) HSP 1 Score: 213 bits (542), Expect = 3.300e-55 Identity = 144/282 (51.06%), Postives = 174/282 (61.70%), Query Frame = 1 Query: 37 PSLGPTPAPLAPGSTRAPVXXXXXXXXXXXXAAAPSVSGVLAMSANALEACEDGCVPGLASAFDVQDYLVRCSCPEVRRRSLGGWMSQGWNSTSVHPTEGGKMNLRRRLVDTDVVYVVTVPGNTFEGIFQSINHFQNNFQEVPRSLGVPDDEIQFSALEFSATPGAPITETESNTDVQLVVSPPASEASGAAIGMFVLFLLALLLGTCGCLWAMLGFYRQKKRAKRVSDEYLAAKAVGSAGSVXXXXXXXXXDDGEYYNNYNPVRTGGMLAPYGRAIAPASI 882 P L PT P+ P +T AP+ XXXXXXXXXX A APSVSG + +S AL CE GCV GLA+AFD+Q Y V+C CPEVRRRSL ++ N TSVHP+EG ++ RRRL +V YVVTVPG T +G+ QSINHFQ N+ EV SLGVP DE+ FS LEF A + I SN DV L+V+PPAS AS AIGMF++ +LALLLGTC CL A+L F G+Y + Y +R GMLAP+ RAI PAS+ Sbjct: 240 PVLVPTRTPITPVTTAAPLPXXXXXXXXXXSAQAPSVSGFIIVSETALAQCEVGCVEGLAAAFDLQPYRVQCICPEVRRRSLRSMLANRRNVTSVHPSEGAYLS-RRRLTTAEVPYVVTVPGITTQGMVQSINHFQANYMEVSSSLGVPGDEVVFSTLEFVAASSSHI----SNMDVPLLVNPPASGASTNAIGMFIICILALLLGTCVCLEAVLNFC------------------------------------GKYCSTYL-IRARGMLAPHHRAIVPASM 479
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Match: D8LG76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG76_ECTSI) HSP 1 Score: 145 bits (365), Expect = 5.460e-34 Identity = 133/261 (50.96%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 2605 ISSSSQSEGSSAWNDTDAQSVPASYGHAGGXXXXXXXXXXXXXXXGAFITEARSAFTTEDAKASDDLGPEPSSPVVREVELYEDDLTV----SEGSAAASRLGYGSEMTFGHDTAAGSSMRSLDVPRGPSG--------GASGQQRPG---LG--RAYGSSGSSVASRVIGLSSELGSNRVIPGQESWRNSPRPGENL---GEMDRAMSGETTDSSALEQQQG-------QEDGDFGTVWLANRAHARQYD-ATQDRG*RG 3303 +SS S+S+ SSAWNDTDAQ XXXXXXXXXXXXXXX T ARSA+++ S G +SPVVREV++Y+D + S G+ AASR+ T+ HDTAAG S S G SG GASG PG LG +AYGSS SS+ SRV G SE+GS+R++P Q+SW+NSP PG G ++R +SGETTDSS LEQQ QEDGDFG VWLA+RAHARQ+D A +DRG G Sbjct: 28 MSSPSESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXTAARSAYSSGGTVQSGRHG---TSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEVTGTYDHDTAAGGSTTSFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQAYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGALAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSG 284
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Match: A0A0G4EB06_VITBC (Methyltransf_11 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EB06_VITBC) HSP 1 Score: 80.1 bits (196), Expect = 2.070e-11 Identity = 55/227 (24.23%), Postives = 106/227 (46.70%), Query Frame = 1 Query: 961 DDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLEKFLAEKKEQRM 1641 +DP Y M+G L + + + RL +F +A E+ + +D++ +P IY +L+ ++ LA+ LAP W N+E + AL + ++ FW L +D +S D++I A IV F G A +++ + + +++ +C +W + +VQL+ V LAIT + T G++ W+ +L+ L ++++ +M Sbjct: 335 EDP-YEAMMGQL--WTARELEDAERQLVVARLTRDFNRADTESEQESFVDAVKGVPSIYRVLKEMNPVTFPPPLRAKLASLLAPQWKNTEAQQSALRQGLGLEPPSKD--FWLKLGQLSDDVSAEDRLIWLADIVPQFTGEPTHDAYVKQMIDVVPLAIDLVKERCQEWSDADVQLVAVDLAIT------DYMTEPPRGRARFYPWLKNFSRGELDDILRKRRDYKM 550 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1097.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1097.887.1 >prot_H-canaliculatus_F_contig1097.887.1 ID=prot_H-canaliculatus_F_contig1097.887.1|Name=mRNA_H-canaliculatus_F_contig1097.887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1045bp MSANALEACEDGCVPGLASAFDVQDYLVRCSCPEVRRRSLGGWMSQGWNSback to top mRNA from alignment at H-canaliculatus_F_contig1097:7869..17920- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1097.887.1 ID=mRNA_H-canaliculatus_F_contig1097.887.1|Name=mRNA_H-canaliculatus_F_contig1097.887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1097:7869..17920- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1097:7869..17920- >mRNA_H-canaliculatus_F_contig1097.887.1 ID=mRNA_H-canaliculatus_F_contig1097.887.1|Name=mRNA_H-canaliculatus_F_contig1097.887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1097:7869..17920- (Hapterophycus canaliculatus Oshoro5f female)back to top |