mRNA_H-canaliculatus_F_contig10966.884.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10966.884.1
Unique NamemRNA_H-canaliculatus_F_contig10966.884.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A6H5L5G7_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5G7_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 7.370e-153
Identity = 231/262 (88.17%), Postives = 244/262 (93.13%), Query Frame = 1
Query:    1 QAAAEAYDAILDEQLDLVGATLLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            +AAAEAYDAILDEQLDLVGA LL+RRARCHFALGRWLQAAADAGRAAKVA+E  DD +AARERAEALELRGRCY+HLGDYELAGNHFRQVLLDDPDNGPCRE+HRRCRAVVKKVEAG +LL  GDV GAT+AWRAATALEPDN   LGPLLLRIASAHLGAKDW ET+RAAQECLN HPDGEVGA+AEI +GDVH  AEEFQEAVNAY RAE KV+EIGMEVLDQAR+KLKQANILLEQSKKKQYYKILGVPRNADLAQIKK
Sbjct:  213 EAAAEAYDAILDEQLDLVGAELLMRRARCHFALGRWLQAAADAGRAAKVASEA-DDDKAARERAEALELRGRCYIHLGDYELAGNHFRQVLLDDPDNGPCREQHRRCRAVVKKVEAGAELLSGGDVAGATKAWRAATALEPDNPALLGPLLLRIASAHLGAKDWAETKRAAQECLNTHPDGEVGAQAEIVMGDVHQAAEEFQEAVNAYARAETKVKEIGMEVLDQARAKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 473          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A1Z5KA29_FISSO (DnaJ homolog subfamily C member 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KA29_FISSO)

HSP 1 Score: 114 bits (285), Expect = 1.910e-25
Identity = 84/245 (34.29%), Postives = 128/245 (52.24%), Query Frame = 1
Query:   52 VGATLLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            VG  L   +A+  F LG +    +D G+  K  A+            EA  LRG+ Y  LG++E A  H+R+ L  DP++  C++ H+  +   KK + G    + G  K A E W  A A++  +T F   L + +A A+  A D     + AQ   +V   GE   ++  A+G++   AE+++EAV  + RA  +V E  ++    A+ KL+ A I L+QSK+K YYKILGV RNA   +IKK
Sbjct:  171 VGDDLRWPKAQSLFHLGDYYGTISDTGKLLKQNAQH----------LEAYHLRGQAYHRLGEHEQAILHYREGLKLDPEHKECKKGHKALKTTEKKKKKGDDAFNDGKYKEAVEFWLQAIAVDETHTAFARSLQIPLARAYSKAGDHARALKVAQ--AHVEDSGET-TESLWALGEIQQNAEKYEEAVRTFQRA-VEVTEDRVQEQQTAKQKLRDAQIALKQSKEKNYYKILGVSRNASKKEIKK 401          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: B8LBL2_THAPS (Dnaj-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBL2_THAPS)

HSP 1 Score: 108 bits (271), Expect = 9.080e-24
Identity = 71/198 (35.86%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  193 EALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            EA +LRG  Y  L + E+A  HFR+ L  DP++  C+E HR  + + KK + G +  +    K A E W  A   +  +  F+ P LL++  AH      GE  +A  E    H D E   +   A+GD  L  ++F EAV  +++A     +   +   Q + K+++A + L+QSK+K YYKILGV RNA L  IKK
Sbjct:  138 EAYQLRGESYWRLNEVEMAMKHFREGLKLDPEHKGCKEGHRLVKKITKKDKRGDEAFEKRQYKQAIEHWWEAMNNDMSHLHFVRPTLLKVVKAHTAL---GEHDQAILEARK-HVDNEETVEGLHALGDAQLAGDKFDEAVQTFSKAFEIAPD---DQKRQCQQKVEEAKVALKQSKEKNYYKILGVARNAKLKDIKK 328          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S2R980_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R980_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.230e-23
Identity = 74/240 (30.83%), Postives = 124/240 (51.67%), Query Frame = 1
Query:   67 LIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            L  +A+  F  G +    +D G+  K  ++            EA +LRG  YM LG+++ A  HFR+ L  DP++  C++ H+  ++++KK + G     AG+ + A   W  A  ++  +  F+ P LL++  AH      GE   +  E  N H +     +  +A GD  L  + F+EAV ++++A    Q    +   + + KL +A + L+QSK+K YYK+LGV RNA+  +IKK
Sbjct:  189 LFMKAQAEFHAGDYYGTVSDTGKILKTHSKH----------LEAYQLRGEAYMRLGEHDTAVTHFREALKMDPEHSGCKKGHKFVKSIMKKHKRGDDAFSAGEYRKAIGFWWEAMNIDMTHLAFVRPCLLKVVKAHTAL---GEHDVSILEA-NKHIENMESVEGFLARGDAELAGDMFEEAVRSFSQA-TDFQPNDRQ--QECKQKLDKAKVALKQSKEKNYYKVLGVARNANKKEIKK 411          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S1UAC9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAC9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.430e-23
Identity = 77/240 (32.08%), Postives = 126/240 (52.50%), Query Frame = 1
Query:   70 IRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQA-RSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            + RA  +  +G   +A AD G+  K+   +GD+        +AL+ RG CY  LG++E A NH+R+ L  DP++  C++ H++ R ++K  + G K  D  D   A                ++GP L+ I+ A +  K   +   AA+E +NV    +  A+    +GDV +  E+++EAV ++ RA      + ++  D+  + KL +A + LEQSKK+ YYK LGV R A   +IKK
Sbjct:  183 MERAWAYQQMGELYEAIADYGKVLKI---KGDNL-------DALQNRGACYYTLGEHEQAINHWREGLKRDPEHKGCKDAHKKLRKLMKAHDKGQKAFDGRDYPTAIXXXXXXXXXXXXXKNYVGPTLILISQAAVKGKALEDAADAARESINVLETADAWAQ----LGDVQVAREQYEEAVRSHGRA------VEIDGSDKKFKEKLHKAEVALEQSKKRNYYKDLGVARTATAKEIKK 402          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S2EEG9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEG9_TRICV)

HSP 1 Score: 105 bits (262), Expect = 1.020e-22
Identity = 78/242 (32.23%), Postives = 120/242 (49.59%), Query Frame = 1
Query:   64 LLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRA-EAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            LL  +AR  +  G +    +DAGR  K  ++  D          A +LRG  Y  LG++++A NHFR+ L  DP++  C+  H+  +A+ KK +                            T F+ P +L++  A   AK+       A++ +++   GE  A   IA+ D  L AE++++AV  Y +A E +  E   E     R KL++A   L+QSK+K YYKILGVPR+A L +IKK
Sbjct:   71 LLFMKARAQYMSGDYYGTVSDAGRILKSHSDHLD----------AYQLRGEAYFRLGEHDMAVNHFREALKFDPEHKGCKAGHKAVKAITKKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAFIRPTMLKVVKALTAAKEHDAAIAEAKKYISM---GE-SADGLIALADAELAAEKYEDAVRTYRQASEFEPNERQQET----REKLQKAETALKQSKEKNYYKILGVPRDAKLKEIKK 294          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S1BWU5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWU5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.150e-22
Identity = 73/241 (30.29%), Postives = 114/241 (47.30%), Query Frame = 1
Query:   64 LLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            LL+ RA+    L  +     DAG+  K+ A   D          A +LRG  Y  LG++E++ NH+R+ L  DP++  C+  H+  + + KK                           P++  F+ P L + A  H      G+  RA +   N+    +  A   + +G+V L AE+F++AV  Y +   + ++      D  + K++QA   L+QSK K YYKILGVPRNAD  +IKK
Sbjct:  181 LLMMRAKAALELDDYYSTVMDAGKVIKLDANNID----------AYQLRGDAYFWLGEHEMSKNHYREALRSDPEHAGCKNGHKLIKKIDKKAXXXXXXXXXXXXXXXXXXXXXXXGYVPNHLNFVRPTLQKKARLH---SKIGQHDRAIEIAQNLLEVDDESADGYVLLGEVQLAAEKFEDAVRTYKQGYEETED------DVFKEKIQQAEAALKQSKTKNYYKILGVPRNADSKEIKK 402          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S4N0N3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0N3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.670e-21
Identity = 74/241 (30.71%), Postives = 116/241 (48.13%), Query Frame = 1
Query:   64 LLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            LL  +A+  +  G +    +D GR  K  ++  D          A +LRG  Y  LG++++A NHFR+ L  DP++  C+  H+  + + KK + G                            F+ P +L++  AH  A   GE   A +E  N H +        +A+GD  L AE++ +AV  + RA   ++    E + + + K+++A I L+QSK+K YYKILGV RNAD   IKK
Sbjct:  197 LLFMKAKAEYNTGDYYGTVSDTGRILKAHSDHLD----------AYQLRGEAYFRLGEHDMAVNHFREALKLDPEHKGCKAGHKAVKTITKKEKRGDDAXXXXXXXXXXXXXXXXXXXXXXXVAFIRPTILKVIKAHSAA---GEHDDAIKEA-NRHIELGESVDGILALGDAELGAEKYVDAVRTFRRA---LEFEPNERMQETKEKVQKAEIALKQSKEKNYYKILGVSRNADKKAIKK 420          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A2R5G7Q4_9STRA (DnaJ-like subfamily C member 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7Q4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.490e-19
Identity = 84/258 (32.56%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   43 LDLVGATLLIR--RARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATAL-------EPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDG-EVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            +D VG +  ++  RA   F  G++ ++ ADAG   K       D+Q      EAL LRGR Y  +GD+E+A  HFR+ L  DP++   +E  R+    V+K+E   K  DA   +G T++ + A +L       +P++  F   +  ++ + H   K   E +   ++ +    +G E        +  +  E  +F+EAV A+ RA A+V+    +V D     L +A + L+QSK+K YYKILGV RNAD   IKK
Sbjct:  167 MDNVGTSAHVKQLRAEARFRQGKFYESIADAGEVLKA----DPDNQ------EALLLRGRGYYLVGDHEMALRHFREGLKKDPEHVATKEALRK----VQKLEKLNKDADAAVARGTTQSLKDAASLYAEAVKVDPEHREFNKKISTKLCAVHARLKQVKEAKLICEQAIRFDKNGIEPYVSLAELLSSMAEETPDFEEAVRAWHRA-AEVEHDNRKVRDG----LHRAEVALKQSKQKNYYKILGVARNADGGTIKK 405          
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Match: A0A7S1CL64_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CL64_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.370e-19
Identity = 79/257 (30.74%), Postives = 128/257 (49.81%), Query Frame = 1
Query:   16 AYDAILDEQLDLVGATLLIRRARCHFALGRWLQAAADAGRAAKVAAEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPCREEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPLLLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEEFQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 786
            A DA+ D +  +    LL+RRARC   +GR  ++ AD G+  K+           +   EA ELRG  +  L D+++A  HF++ L  DP++  C+E +R  + +VK   A      A     A  A+     + P +T  +  +  R+A + +  K   E + AA E + ++ D     +A   +G+  +  EE+ + V ++ RA  ++ +   E+ D     L +A   L+QSK K YYKILGV R+AD   IKK
Sbjct:  202 ATDAMADGRA-VQSVPLLMRRARCERMIGRHHESLADTGKVLKID----------KANMEAYELRGMTFYQLMDFDMAKTHFQEGLKSDPEHKGCKEAYRLVKKIVKVKGAAETHQAASRHHDAVAAFEELLTVAPQHTPLVQLVKRRLAQSFVKMKKAKEAKEAAAEAIALNGDD---WEAHRWMGEAQMILEEWDDCVRSWKRAN-EINQGNRELQDG----LARAEAALKQSKVKNYYKILGVARDADERTIKK 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10966.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5G7_9PHAE7.370e-15388.17J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A1Z5KA29_FISSO1.910e-2534.29DnaJ homolog subfamily C member 3 n=2 Tax=Fistulif... [more]
B8LBL2_THAPS9.080e-2435.86Dnaj-like protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2R980_9STRA1.230e-2330.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1UAC9_9STRA4.430e-2332.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2EEG9_TRICV1.020e-2232.23Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1BWU5_9STRA9.150e-2230.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4N0N3_9STRA3.670e-2130.71Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2R5G7Q4_9STRA3.490e-1932.56DnaJ-like subfamily C member 3 n=1 Tax=Hondaea fer... [more]
A0A7S1CL64_9STRA7.370e-1930.74Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10966contigH-canaliculatus_F_contig10966:114..4425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score452.6
Seed ortholog evalue1.3e-124
Seed eggNOG ortholog2880.D7G291
KEGG koko:K09523,ko:K09527
KEGG Pathwayko04141,ko05164,map04141,map05164
EggNOG free text desc.positive regulation of translation initiation in response to endoplasmic reticulum stress
EggNOG OGsCOG0484@1,KOG0624@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-16_002030.1
Exons6
Model size786
Cds size786
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10966.884.1prot_H-canaliculatus_F_contig10966.884.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10966 114..4425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.770016-CDS-H-canaliculatus_F_contig10966:113..1581622928767.770016-CDS-H-canaliculatus_F_contig10966:113..158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 114..158 -
1696845556.2110467-CDS-H-canaliculatus_F_contig10966:113..1581696845556.2110467-CDS-H-canaliculatus_F_contig10966:113..158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 114..158 -
1622928767.7851298-CDS-H-canaliculatus_F_contig10966:845..10401622928767.7851298-CDS-H-canaliculatus_F_contig10966:845..1040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 846..1040 -
1696845556.223116-CDS-H-canaliculatus_F_contig10966:845..10401696845556.223116-CDS-H-canaliculatus_F_contig10966:845..1040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 846..1040 -
1622928767.8046134-CDS-H-canaliculatus_F_contig10966:1599..16861622928767.8046134-CDS-H-canaliculatus_F_contig10966:1599..1686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 1600..1686 -
1696845556.2323532-CDS-H-canaliculatus_F_contig10966:1599..16861696845556.2323532-CDS-H-canaliculatus_F_contig10966:1599..1686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 1600..1686 -
1622928767.819114-CDS-H-canaliculatus_F_contig10966:2457..26491622928767.819114-CDS-H-canaliculatus_F_contig10966:2457..2649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 2458..2649 -
1696845556.2420979-CDS-H-canaliculatus_F_contig10966:2457..26491696845556.2420979-CDS-H-canaliculatus_F_contig10966:2457..2649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 2458..2649 -
1622928767.8395667-CDS-H-canaliculatus_F_contig10966:3205..32981622928767.8395667-CDS-H-canaliculatus_F_contig10966:3205..3298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 3206..3298 -
1696845556.254497-CDS-H-canaliculatus_F_contig10966:3205..32981696845556.254497-CDS-H-canaliculatus_F_contig10966:3205..3298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 3206..3298 -
1622928767.85791-CDS-H-canaliculatus_F_contig10966:4251..44251622928767.85791-CDS-H-canaliculatus_F_contig10966:4251..4425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 4252..4425 -
1696845556.269543-CDS-H-canaliculatus_F_contig10966:4251..44251696845556.269543-CDS-H-canaliculatus_F_contig10966:4251..4425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10966 4252..4425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10966.884.1

>prot_H-canaliculatus_F_contig10966.884.1 ID=prot_H-canaliculatus_F_contig10966.884.1|Name=mRNA_H-canaliculatus_F_contig10966.884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=262bp
QAAAEAYDAILDEQLDLVGATLLIRRARCHFALGRWLQAAADAGRAAKVA
AEQGDDSQAARERAEALELRGRCYMHLGDYELAGNHFRQVLLDDPDNGPC
REEHRRCRAVVKKVEAGIKLLDAGDVKGATEAWRAATALEPDNTLFLGPL
LLRIASAHLGAKDWGETRRAAQECLNVHPDGEVGAKAEIAVGDVHLEAEE
FQEAVNAYTRAEAKVQEIGMEVLDQARSKLKQANILLEQSKKKQYYKILG
VPRNADLAQIKK
back to top

mRNA from alignment at H-canaliculatus_F_contig10966:114..4425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10966.884.1 ID=mRNA_H-canaliculatus_F_contig10966.884.1|Name=mRNA_H-canaliculatus_F_contig10966.884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10966:114..4425- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCGCGGCGGAGGCGTACGATGCTATCCTGGATGAGCAGCTGGACCT CGTGGGAGCGACGCTCCTCATCCGGCGTGCCCGGTGCCACTTCGCCCTGG GGCGATGGCTGCAGGCCGCAGCGGACGCCGGCAGAGCGGCGAAGGTGGCC GCGGAACAGGGGGACGACAGCCAGGTAGATTTCGAGGCTGAGGTTAAGGC CGGGACGGAGAAGTGTGTAGCGCAGCATGGTGCAGGGCAGCGTAGTCCGG CAGGTGCGATCGATCGCGACGTTTTAGATTTTTCTTGCACATTCCGGCGG GATAGTGAAGACCGAGTCACATCGAGACTGCGCGGTTTCTCTGCCGACGA ATTCAGCGCCTCGCCGCAGGGAAAGGAGGCACTCGCGCGCCGCGGCGGTG TCCCGTCGTGCTTGCGAGTGCGTCCCTGTCTTCGAAGGTGGATGTTTTTC GCGTGTGTATATCGGCGGCGCTTGCGGCGGGGAAGGGAGCGGCGATCAGA TCAGGGGGCACGCGAACGCAGCGGCCGGTGCTGTACGCACATCGCAGCGA GCAGGGGGCACGCGAACGCAGCGAGCGGTGCTGTGCGTACATCGCAGGCG CACGGAAGGGCAGACTTCCTCTTGGAGGCCTGTGCCGTGGACACTCGTCT CCCGTTGCTTCCCGAGTTTGTCGTCGTGCGGAACTCGTTGAGGGAATCGG CAATGGGCTCCGGCCGGCAGGCAGGCGGCGAGCAGTGCCAACCCGGCCAC TCTGTCAACACCGGCACTGGATTAGCAACCAGGAAACGAGGAGTTCGGCG TAGGGCTGCGGTTGAAGGCGTCAGACAAGTGATGCTGGTGAAGCACGGCT TGCTGCTGGCAAGGCTTCGGATTCGTGCGTCTTGTTTGCGTCACTTGTTT CTTGTCCCTTGTTTTGCTGTACGTCAATTTCGGAACAAAAGGCGCTGGCG GAGGCAGTGACCCCCCCACCCCGAGCACGTGGGACGACTGCTCCCTCATC CTCTCCCCCATCCTCCCCAAAGCTTTTCTTGTCTCTCGCACGCCTCGCAT GGACACCTGCGAGGGTCTGACTCCCACAGTCTGTTTTTCTCCTGTCTGCA CTCGCGAAAAATGCTACACGACGAAAGGCAGCACGAGAGCGCGCGGAAGC GTTGGAGCTCAGAGGGCGGTGCTACATGCACCTTGGGGACTACGAGCTTG CCGGCAACCATTTCCGACAGGTGCGTGTTCTTGCCCCATGTGGTCGATGA CTCTGCTGCTGCTGCGGCTGTTGTCGAAATAGCTGCTGCTACTGCTGCTA CCTCTGTTGTATTTTCAAGTCTGTGTATGTCACTACTTTCATGTTGATTG CCTTGTCGTTGGGTCCAATCGGCAGGCCTTTTCCTTTTCGCAAGCACCAG AGCACTACTAGAGCACTGCTTGTTCGGCACTATGGCCAAGCTTGCAAACT ATTGTTCTACTCCTAGTGTGTGTTCCTGTGGTAGACGACGACGTATTTGG TTGCCTCCTTCATGCGGCAGCGATCAAAAAGAGGAACAGAGGAACGCAAC TTTGAACCACACCAACGGGGCACGAACCGAAACCAAACCAAATCAATTCG GAAAACTGAATTGGATGGGCAAGGCATATGAAGCGAAACGATGACGAGCG GAGAGAGACGAAACGGGACTTGAAACGGCACGGGATCAAACGACAGCGAC AGTGACAGCAACAGCAACAGCAACGACAACAACGAAGCTCAAACCAAGAA AAAACAACTACGCTTGCGATCAACAGGTTCTGCTCGACGACCCGGACAAC GGCCCCTGCCGCGAAGAGCACCGCCGCTGTCGCGCCGTGGTGAAGAAGGT GGAGGCCGGGATCAAGCTGCTCGACGCGGGCGACGTGAAAGGGGCGACGG AGGCGTGGAGAGCTGCCACGGCGCTCGAGCCGGACAACACGCTCTTCTTG GGCCCGTTGCTCTTGAGGGTGAGGAAGGAAGATGGAAGGAAGGAAGGGGG GGGGGAGGGGGGGACGCAGGGAGGGGTGTCGAAGGCTGCAGGGGAAGGGA GAAGAAAAAGGAAAATGTTTTTCTGTCCCGGCTGGGGCGGGGCGCATTGA ACCCTAATTGGAAGGAATTCTTCAGTTTCCAGGCCAACCCCCAGTGTCGT CTCGGCGGGCGTTTCCTTCGGTGCTGTTCACGCTCCCTTGGGCGAAGGCT GTTCGGATTTGTCGGCTGTGACATTGTCGTCGAGGTGTGACGAGCGTGCG GCGAGAGGGAGAGAGCGGAGTGGTGGTGATGGGGCGGGTGGGCCGTCGCT AGGAGATGTGATCTGCTTCTGGTGCAGTCTGTCTGCCGCCGATACTTTCC GACGCCGTCCATGTTGTGGCTGTGTCCGGCGCTTGTCCGCCACCCTTCCA GAGGCCCCTGGCTCGCGCACGGTAGATAGATGCCGGAAGTCTTGGTGATG CTTCCTCTGCCCTTGGTGCTATCTTTGTCGCCGTTTGTCGATTAGCTGTT GTTGTTGCTGCTTGTGCTGCTGCTGCTGCTGCCGCCGCTGCTGCTTGTGC TACTTTTGGCCTTGGTGTTCGGTTCTGTCCGACTTCTCCGCCGCCACGGC CGACCTGCTGCTCGTGCTGCTGCTCTTGGGCTTGCTCTTCCGGTGGGGTG TGTTTTCGTTAGCCGTCGCCGCGGTCAAGGTCAACATCAACGTGGTGTAA TTCATCCCGCCAATTGTTCTAATTGTGTTGACTGCGTAGATCGCGTCGGC GCATCTGGGGGCGAAGGACTGGGGGGAGACCAGGCGAGCGGCCCAAGAGT GTCTGAACGTGCACCCCGACGGAGAGGTGAGTGGTAGACGGCACAGACGG CACAGACAACGCAGACCACGGGAAGACGGGCTTTGCAGAAGGGAGACGCG GACGCGGCTGATGCACATGGCCGGAAGAACGTTGAAACGCGCACTCGTGC AGCGCGTGCAGCTTCCGCACCGTTTTTCTTGTGTGTCGCCTGCGAGGATG AGACGAATCGTAGACATCGGCGTGACAGAGGGACGGGGGCGGGCTGGGGG GGGGGGGTAGGGTGCAAGAAGACGGACGGTGGAAGTTACGCGTGAAGTCC ACACTTGTGGTTATCGTGGAACTGGTGTTTGCTGATGCTGCTGGTGCGGC GGGTGCCGCTGGTGCAGCTGGTGCGGCGGCGGCGGCGGCGGTGGAAATAT GTTCGTCTTTGTTCGTCCTCTCTTCACGAAGGCCGCCCCGCCCCCTCCCT TCATCGCTCGCTGTCATAGCTCCACTTTCACTCCTTGGACCGAGACGAAG CAATCCTCCTGTTTCCGTCCACCACTGTCCAGGGGTGCACTGTAGTCATT GATCCTTTTTGTTTTCTTGTGCTTTTGGCGGGAAGGTCGGGGCGAAAGCG GAGATCGCGGTCGGAGACGTCCACCTCGAGGCCGAGGAGTTCCAGGAGGC GGTGAACGCCTACACCAGGGCGGAGGCGAAGGTGCAGGAGATAGGCATGG AAGTCTTGGACCAGGCGCGATCGAAGCTCAAGCAGGCGAACATCTTGCTG GAGCAGAGCAAAAAGAAGCAATACTACAAGGTGAGAGAGGAAGCAGGAGC CTCGTCTGTGAAAAAAGGGAAATATCCGCTGCTGCTGGAAGGTCCAACGA AGAGGCTCCACTCTAAGGGACTCCATGTGTGGGCGTATGAAGAAAGAGAG GTGGGGGGGGGATATGTAATGAACAGGTGCGAAGAGCGCGCACCTGCTGT TCTTTCAGCTCGTGGAGCCAGACGGGCAATGCGTCAGAGTGAGAGATAGA GGAACGAGAGGAAAGACGCTGGCGCTGAACGCGCGAGCGCTCGGTTCACG AAAGCTTGGTGCTCAACTCTTCGCCGTCTGGTGCTTCCGTTCTGTCTATT CACTCGGGTGGGAAATTTGGCCCATGATCAAGAGCATCACGCACACGCAG GGACTGTTGCGGCAAACGTTCACATTTGCACGAGATATGCGTTGTTTTGC CGTCGCCTTCCCCTTTCATTTAGCCAGCGGAGAGGCCAGGGGCCGAGTGA GCGTCGTTGTTTCTCGCCTCTCCCCGGCCCCCATCTCGTTTCTTCCTCCT CTTCTCCGAAGCACACACAGCATGGCAAGATATATTGAGCTCGTCAAGAC CACCATTCTACTTCCCCTCCCCCCCTCCCGCCTGGTGCACGCTGGTGCGC GCTTCTTCGGCGGAAAACCCGATGCAACCCCGTCCGTCGCCGGATTCATC AATCGACAATCGACTAGATTCTGGGGGTCCCGCGAAATGCTGATCTAGCG CAAATCAAGAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10966:114..4425-

>mRNA_H-canaliculatus_F_contig10966.884.1 ID=mRNA_H-canaliculatus_F_contig10966.884.1|Name=mRNA_H-canaliculatus_F_contig10966.884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1572bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10966:114..4425- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCGCGGCGGAGGCGTACGATGCTATCCTGGATGAGCAGCTGGACCT
CGTGGGAGCGACGCTCCTCATCCGGCGTGCCCGGTGCCACTTCGCCCTGG
GGCGATGGCTGCAGGCCGCAGCGGACGCCGGCAGAGCGGCGAAGGTGGCC
GCGGAACAGGGGGACGACAGCCAGCAGGCCGCGGCGGAGGCGTACGATGC
TATCCTGGATGAGCAGCTGGACCTCGTGGGAGCGACGCTCCTCATCCGGC
GTGCCCGGTGCCACTTCGCCCTGGGGCGATGGCTGCAGGCCGCAGCGGAC
GCCGGCAGAGCGGCGAAGGTGGCCGCGGAACAGGGGGACGACAGCCAGGC
AGCACGAGAGCGCGCGGAAGCGTTGGAGCTCAGAGGGCGGTGCTACATGC
ACCTTGGGGACTACGAGCTTGCCGGCAACCATTTCCGACAGGCAGCACGA
GAGCGCGCGGAAGCGTTGGAGCTCAGAGGGCGGTGCTACATGCACCTTGG
GGACTACGAGCTTGCCGGCAACCATTTCCGACAGGTTCTGCTCGACGACC
CGGACAACGGCCCCTGCCGCGAAGAGCACCGCCGCTGTCGCGCCGTGGTG
AAGAAGGTGGAGGCCGGGATCAAGCTGCTCGACGCGGGCGACGTGAAAGG
GGCGACGGAGGCGTGGAGAGCTGCCACGGCGCTCGAGCCGGACAACACGC
TCTTCTTGGGCCCGTTGCTCTTGAGGGTTCTGCTCGACGACCCGGACAAC
GGCCCCTGCCGCGAAGAGCACCGCCGCTGTCGCGCCGTGGTGAAGAAGGT
GGAGGCCGGGATCAAGCTGCTCGACGCGGGCGACGTGAAAGGGGCGACGG
AGGCGTGGAGAGCTGCCACGGCGCTCGAGCCGGACAACACGCTCTTCTTG
GGCCCGTTGCTCTTGAGGATCGCGTCGGCGCATCTGGGGGCGAAGGACTG
GGGGGAGACCAGGCGAGCGGCCCAAGAGTGTCTGAACGTGCACCCCGACG
GAGAGATCGCGTCGGCGCATCTGGGGGCGAAGGACTGGGGGGAGACCAGG
CGAGCGGCCCAAGAGTGTCTGAACGTGCACCCCGACGGAGAGGTCGGGGC
GAAAGCGGAGATCGCGGTCGGAGACGTCCACCTCGAGGCCGAGGAGTTCC
AGGAGGCGGTGAACGCCTACACCAGGGCGGAGGCGAAGGTGCAGGAGATA
GGCATGGAAGTCTTGGACCAGGCGCGATCGAAGCTCAAGCAGGCGAACAT
CTTGCTGGAGCAGAGCAAAAAGAAGCAATACTACAAGGTCGGGGCGAAAG
CGGAGATCGCGGTCGGAGACGTCCACCTCGAGGCCGAGGAGTTCCAGGAG
GCGGTGAACGCCTACACCAGGGCGGAGGCGAAGGTGCAGGAGATAGGCAT
GGAAGTCTTGGACCAGGCGCGATCGAAGCTCAAGCAGGCGAACATCTTGC
TGGAGCAGAGCAAAAAGAAGCAATACTACAAGATTCTGGGGGTCCCGCGA
AATGCTGATCTAGCGCAAATCAAGAAGATTCTGGGGGTCCCGCGAAATGC
TGATCTAGCGCAAATCAAGAAG
back to top