mRNA_H-canaliculatus_F_contig10957.879.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10957.879.1
Unique NamemRNA_H-canaliculatus_F_contig10957.879.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10957.879.1 vs. uniprot
Match: D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.500e-99
Identity = 161/244 (65.98%), Postives = 173/244 (70.90%), Query Frame = 1 
Query:    1 MGASASTMYVQGGSWGLKFVPTYDLMEQQVHTCLVPSERDFLLACLDEIYSRCDSLLSGKKQAAAFHEQGAVEALLEMLGMFKLDEVLLRQVVGTLFRLCAQDDLTLAHFLDLGGRTALDETLEMHKDDHDICEDGHAFTAMIHRYAREIAKRDAARLSQACRYCPACRPLVDCPDFLGPLGNRLSSDPAQECLQRGLGQRLVYRGTNGGHA---DIEYGGNETMDPASDDLVRIQALLEHMDK 723
            MGASAST+Y QGGSWGLKFVPTYDLMEQ VHTCLVPSERDFLLACLDE++ RCDSLL G+KQ AAFHEQGAVEALLEMLGMFKLDEV LRQ V TL  LC QDD  L HFLDLGGR ALDETL MH DDH +                               YC ACRPLVDCPD LGP GNRLSSD  Q CLQRG G+RLVYRG++G      D+E       DP SDDLVRI+ L+EHM+K
Sbjct:    1 MGASASTLYTQGGSWGLKFVPTYDLMEQ-VHTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQDDAVLDHFLDLGGRVALDETLGMHTDDHHM-------------------------------YCSACRPLVDCPDLLGPAGNRLSSDSVQRCLQRGAGKRLVYRGSSGNGPIVDDVEDEDENAADPTSDDLVRIRRLVEHMEK 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10957.879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0L4_ECTSI1.500e-9965.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10957contigH-canaliculatus_F_contig10957:437..4087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-06_007190.1
Exons7
Model size726
Cds size726
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.8991659-CDS-H-canaliculatus_F_contig10957:436..5341622928766.8991659-CDS-H-canaliculatus_F_contig10957:436..534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 437..534 -
1696845555.8516946-CDS-H-canaliculatus_F_contig10957:436..5341696845555.8516946-CDS-H-canaliculatus_F_contig10957:436..534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 437..534 -
1622928766.9126403-CDS-H-canaliculatus_F_contig10957:1154..12941622928766.9126403-CDS-H-canaliculatus_F_contig10957:1154..1294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 1155..1294 -
1696845555.861464-CDS-H-canaliculatus_F_contig10957:1154..12941696845555.861464-CDS-H-canaliculatus_F_contig10957:1154..1294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 1155..1294 -
1622928766.924273-CDS-H-canaliculatus_F_contig10957:1823..19161622928766.924273-CDS-H-canaliculatus_F_contig10957:1823..1916Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 1824..1916 -
1696845555.8712208-CDS-H-canaliculatus_F_contig10957:1823..19161696845555.8712208-CDS-H-canaliculatus_F_contig10957:1823..1916Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 1824..1916 -
1622928766.9635932-CDS-H-canaliculatus_F_contig10957:2544..26291622928766.9635932-CDS-H-canaliculatus_F_contig10957:2544..2629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 2545..2629 -
1696845555.8805332-CDS-H-canaliculatus_F_contig10957:2544..26291696845555.8805332-CDS-H-canaliculatus_F_contig10957:2544..2629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 2545..2629 -
1622928766.9896348-CDS-H-canaliculatus_F_contig10957:3003..31351622928766.9896348-CDS-H-canaliculatus_F_contig10957:3003..3135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 3004..3135 -
1696845555.8933613-CDS-H-canaliculatus_F_contig10957:3003..31351696845555.8933613-CDS-H-canaliculatus_F_contig10957:3003..3135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 3004..3135 -
1622928767.0011122-CDS-H-canaliculatus_F_contig10957:3428..35221622928767.0011122-CDS-H-canaliculatus_F_contig10957:3428..3522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 3429..3522 -
1696845555.904604-CDS-H-canaliculatus_F_contig10957:3428..35221696845555.904604-CDS-H-canaliculatus_F_contig10957:3428..3522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 3429..3522 -
1622928767.0159266-CDS-H-canaliculatus_F_contig10957:4003..40871622928767.0159266-CDS-H-canaliculatus_F_contig10957:4003..4087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 4004..4087 -
1696845555.9180129-CDS-H-canaliculatus_F_contig10957:4003..40871696845555.9180129-CDS-H-canaliculatus_F_contig10957:4003..4087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10957 4004..4087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10957.879.1prot_H-canaliculatus_F_contig10957.879.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10957 437..4087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10957.879.1

>prot_H-canaliculatus_F_contig10957.879.1 ID=prot_H-canaliculatus_F_contig10957.879.1|Name=mRNA_H-canaliculatus_F_contig10957.879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=242bp
MGASASTMYVQGGSWGLKFVPTYDLMEQQVHTCLVPSERDFLLACLDEIY
SRCDSLLSGKKQAAAFHEQGAVEALLEMLGMFKLDEVLLRQVVGTLFRLC
AQDDLTLAHFLDLGGRTALDETLEMHKDDHDICEDGHAFTAMIHRYAREI
AKRDAARLSQACRYCPACRPLVDCPDFLGPLGNRLSSDPAQECLQRGLGQ
RLVYRGTNGGHADIEYGGNETMDPASDDLVRIQALLEHMDK*
back to top

mRNA from alignment at H-canaliculatus_F_contig10957:437..4087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10957.879.1 ID=mRNA_H-canaliculatus_F_contig10957.879.1|Name=mRNA_H-canaliculatus_F_contig10957.879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10957:437..4087- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCATCAGCAAGCACCATGTATGTCCAGGGTGGATCCTGGGGGCT
GAAGTTCGTCCCAACCTACGATCTCATGGAGCAGGTATGTGACAAAACGA
TTGTCCATCTCCTCGTAGATCCGACTTAGCAGGTGGTGTGTGACACAACA
ATGATGTAGGCACAAAATAAGGGAAAGTACCATTCATCCCACCATTGGGT
AGCGTTTTTGATTGAAGGAGCCCTTTCAGGATATGTTCTATTTCTTTCAA
TATGAATTCCTCTTTACTCATCTATATCGTGGCGTTGGTCGCATAAGCTC
GAAATAGGCGACACGCAGGACGTTCGGTTCCGTTGTTGTCTGACAGACAG
ACGGAGTTTACTCAAACGTATCGGCACATGAACTGGAGGAGGGGTTGCAT
GGACTATTTTGTGTGATTCTAGAATGTGCTATTTTTTATCCTCCATCAGA
GAATCATAACAACCGATCACATTCCCTTCCTCGCTGTACCTCTCACACTG
CTGTACTGCTGCTGTACTATTTGTCGAAAACCTTCGTGTGCGTGTGCAAC
ACGCTGGGAAACAAGCAGGTTCACACGTGTCTGGTGCCCTCGGAGAGAGA
CTTCCTGTTGGCTTGCCTGGACGAGATATATAGCCGGTGCGATTCCCTGC
TCAGCGGAAGTGAGTACACTTCACGTCTCCAATTCTGTGTCCTTGTGTCC
ATATTGATATGTTCGCACCTTTGTCCATATCATAGTAAAGATTTCCGAAG
ATAAGTCCAACATGTTACCGAAAATCCATCCTTACGAGTACGGTTGGGGA
CGAGCACAAGATTCGGGTTAAATCACAAGTTAGGGAGAAGATTTGCCTAC
AAATAGGCCAATTCTGACCCGAAAAGTCACAGGTTCGAATAAAACACACA
AGGCAAATGCCATGTGCAAGCAAACAGAAACCCGAATCCATGTTCAAAGC
AGAGAAGCAGGCAGCCGCGTTCCACGAACAGGGCGCGGTGGAAGCATTGT
TGGAGATGCTGGGCATGTTCAAGTTGGACGAGGTGCTCCTCCGACAGGTG
GTTGGGACACTTTTTCGTCTGTGCGCACAGGACGGTGAGATCTGGAGACA
AAATTAAATGTAGAGTTTGTGACGTTTGTTGGTCTTTGAACTTTTTTTGC
AGTTTGGCATGACCGAGGCCCAAGAAAAAAAACGAGGCACTCCCTCACCT
TCTCTCCCGACTGTTTCCGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCGTCGCCCACCCTCCCCCCCCCCGCTTCCCCCCCCCCCCCT
CCCCCCCCCCTTTTTCCCCCCCCCCCCCCCCCCGCGGCTCTTCCCGGCCT
GGTCGGCGATGCCTAACATTCTCCATCCCAGTTTCGCGCACACAGATACG
CACGATGGCTGAAGTCCACTCGAGTATCATCTCATCTTCTACCCCATTCA
AAACACAGATCTAACCTTGGCACACTTTTTGGACCTGGGAGGGAGAACAG
CTCTCGACGAAACGCTTGAGATGCACAAGGATGATCACGATATGTGAGGT
CGAATGCGACAGTGGTGAAACGCACACGCAGTTGTAGCATTAAGAAACTG
GACAACCGATGCAAGGAACGATTTCCACGGGAAGGCATTCGGAGATTGAA
ATACGGAAAAAGAAAAAAGAAAAGCAGAGGTGCTCTACTAACCATGATTG
ACGGAGACAACCATTTTTCGCAATTTCTGCATCAGTTTGGGTTGCTCTCG
CCCTCGAATTTCTTCCGTCCTCTCCCACCTCTGTCATTCCTTCTCTGCCT
TCCTGTCTCCCTCTCTCAATGTGCCTGCCCTTTCTCTCTAAAACTTCACT
GCTGTGTAGGTTTGAGGTACACAGGATGACATCAGAGAGGCACAAAGATG
GATGACGTTGTTTTTACTTTTTGTCGCTGTAACGTTGGTGTTGAACAAAC
AAGTTGAGCGGACCCCAAACTTCCGAGATGCCGGCTTTCTGACGAAAAGT
AGCCACATCCGTCTGCACCGTTCCTAGTTTTTCTGCTTTGATGCCGGGTG
GTGATCTGACGAATCACAGTCTCCGCGTATATCTTCCATGCTCGTCTGTG
TTTATCCTCACAACGAACGGAAACGACGGAATCGTGGAACGACATCGACG
ACAATGACAACATCGACAAAGATGTGAAGATGGGCATGCCTTCACCGCTA
TGATCCACAGATACGCCCGAGAGATCGCGAAGAGGGACGCTGCTCGATTG
TCCCAGGCTTGCAGGTGCAGTGCGGTGCGGTGAGCGAGCAAAAAGTCTCG
TTTCTAAAGGCGTACCAGACAATGTTGTAGAGTCAACAAATCGGAGAGGT
TAACCTTCATCATACGGGGCAATGAAGTGGGGTGATCATCTGAAGTATGC
ATTCATTGTCGAAACAGGAACGTTTGCTCCGAGTTTTACATTGTATTTTG
CTATCCGGATTTCTTGTCTCAGCAGCTCACATTGCATGCTTAGTCTTGCG
CCTAGAGGCCTAGCGACAAGCGCCGACACTGGAAGCCAAGCTTCTGGGTG
TCCTCCTCCAAACCTCAACAAAGGAGAGCAAAATTACGGCGAGAACGAAC
GAGAAAGGACAACACCATCATCATTGTCTCCGCCGGCATATCAATTTCGG
GGCGATCAGCAATACGTTTCCTCCACGTAGACGAACAATCATACTCGGCC
AAACCCTATCACGTAAAACGAAAAGGTAAAACTACTGTTACAGATCAACG
CAACCGTCGTATCCTCCTCCCGATGGTGCTCCGTTGAAACAAGGTACTGC
CCGGCTTGTCGTCCCCTTGTGGACTGCCCCGACTTCTTGGGACCCCTGGG
AAACCGGCTTTCCTCTGACCCCGCTCAGGAGTGCCTCCAACGAGGCCTGG
GCCAACGACTCGTGTACAGGGGCACCAACGGCGGTAAGTAGGGGGCGCTG
ATTACCCGGTCAGCGCGCCTCGTGATGGTCTGCATCATGCTTGCGGTTCT
TGTTCGTTCCGGATGTCATCGCCATGGTGCATGTTTGAATGCTGTCGTCG
TTGCCGCCATTGATGTTCCTTGCGTTAGATGTGATGACAAGCACGTGTGC
TGTCGTGACGTTCAGAGAAAAAGACAGAGACAGAGAGGGAGACAGAGGGG
GAGACAGAGAGGGAGACAGAGGGAGGCAGAGGGAGGCAGAGGGAGACAGT
GGGAGGCAGAGGGAGACAGAGGGAGACAGAGAGGCAGATACAAGGAGACA
GAGACCAAAAGACAGAGAAAAAGAGACAGAGTCAAAGACAGAGAATAGAG
TCAAAGCTAGACAAAGACAAAGACAGAGACAGGGACGAAGATGGGAAGAA
AGAGAGGGGTAAAGATATACGAAGAGGGAGAGAAAGACGTACGCAAAGAA
GAGAGGAGGAGAGGAGAAAAAATCAACAAAATACTCGATGAGTCTATGTT
AGGGGCAACATCTCTTCCTACCCGCCTCTCCGTCACTTCCTCTCCGGGTC
TTTGTCTCTTTCCTTCTCTTACATTATTCCACTCCTTGAACCACTTCTTC
CAGGGCACGCCGATATAGAATATGGTGGGAATGAGACAATGGATCCGGCC
TCGGACGACCTTGTTAGGATACAGGCGTTGCTGGAACATATGGACAAGTG
A
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10957:437..4087-

>mRNA_H-canaliculatus_F_contig10957.879.1 ID=mRNA_H-canaliculatus_F_contig10957.879.1|Name=mRNA_H-canaliculatus_F_contig10957.879.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10957:437..4087- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCATCAGCAAGCACCATGTATGTCCAGGGTGGATCCTGGGGGCT
GAAGTTCGTCCCAACCTACGATCTCATGGAGCAGATGGGAGCATCAGCAA
GCACCATGTATGTCCAGGGTGGATCCTGGGGGCTGAAGTTCGTCCCAACC
TACGATCTCATGGAGCAGCAGGTTCACACGTGTCTGGTGCCCTCGGAGAG
AGACTTCCTGTTGGCTTGCCTGGACGAGATATATAGCCGGTGCGATTCCC
TGCTCAGCGGAACAGGTTCACACGTGTCTGGTGCCCTCGGAGAGAGACTT
CCTGTTGGCTTGCCTGGACGAGATATATAGCCGGTGCGATTCCCTGCTCA
GCGGAAAGAAGCAGGCAGCCGCGTTCCACGAACAGGGCGCGGTGGAAGCA
TTGTTGGAGATGCTGGGCATGTTCAAGTTGGACGAGGTGCTCCTCCGACA
GGTGGTTGGGACACTTTTTCGTCTGTGCGCACAGGACGAGAAGCAGGCAG
CCGCGTTCCACGAACAGGGCGCGGTGGAAGCATTGTTGGAGATGCTGGGC
ATGTTCAAGTTGGACGAGGTGCTCCTCCGACAGGTGGTTGGGACACTTTT
TCGTCTGTGCGCACAGGACGATCTAACCTTGGCACACTTTTTGGACCTGG
GAGGGAGAACAGCTCTCGACGAAACGCTTGAGATGCACAAGGATGATCAC
GATATATCTAACCTTGGCACACTTTTTGGACCTGGGAGGGAGAACAGCTC
TCGACGAAACGCTTGAGATGCACAAGGATGATCACGATATATGTGAAGAT
GGGCATGCCTTCACCGCTATGATCCACAGATACGCCCGAGAGATCGCGAA
GAGGGACGCTGCTCGATTGTCCCAGGCTTGCAGATGTGAAGATGGGCATG
CCTTCACCGCTATGATCCACAGATACGCCCGAGAGATCGCGAAGAGGGAC
GCTGCTCGATTGTCCCAGGCTTGCAGGTACTGCCCGGCTTGTCGTCCCCT
TGTGGACTGCCCCGACTTCTTGGGACCCCTGGGAAACCGGCTTTCCTCTG
ACCCCGCTCAGGAGTGCCTCCAACGAGGCCTGGGCCAACGACTCGTGTAC
AGGGGCACCAACGGCGGTACTGCCCGGCTTGTCGTCCCCTTGTGGACTGC
CCCGACTTCTTGGGACCCCTGGGAAACCGGCTTTCCTCTGACCCCGCTCA
GGAGTGCCTCCAACGAGGCCTGGGCCAACGACTCGTGTACAGGGGCACCA
ACGGCGGGCACGCCGATATAGAATATGGTGGGAATGAGACAATGGATCCG
GCCTCGGACGACCTTGTTAGGATACAGGCGTTGCTGGAACATATGGACAA
GTGAGGCACGCCGATATAGAATATGGTGGGAATGAGACAATGGATCCGGC
CTCGGACGACCTTGTTAGGATACAGGCGTTGCTGGAACATATGGACAAGT
GA
back to top