mRNA_H-canaliculatus_F_contig10949.874.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10949.874.1
Unique NamemRNA_H-canaliculatus_F_contig10949.874.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10949.874.1 vs. uniprot
Match: A0A6H5JQB9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB9_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 2.230e-69
Identity = 129/155 (83.23%), Postives = 136/155 (87.74%), Query Frame = 1 
Query:    1 RARLSAGVACLWAGIGVGAMLRGQTAEATAHYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFPKFFRYTAMANDVAASLDRQGLCSSSGKLRQSGRKG--PASKGCSEPAKFLLKCFDAMSHFLELEGEEADSPIEGIIAPQLTRGPSS 459
            RARLSAGVACLWAGIGVGAML GQTAEAT+ YAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDF KFFRYTAMANDVAASLDRQ    +S KL Q G +G  P  +GCSEPAKFLLKCFDAMSHFLELEGEE++SPI GI+AP L RG SS
Sbjct:  192 RARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQ----ASAKLPQGGSRGSQPKQQGCSEPAKFLLKCFDAMSHFLELEGEESNSPITGIVAPPLARGASS 342
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10949.874.1 vs. uniprot
Match: D8LBZ1_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ1_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 4.090e-65
Identity = 123/153 (80.39%), Postives = 127/153 (83.01%), Query Frame = 1 
Query:    1 RARLSAGVACLWAGIGVGAMLRGQTAEATAHYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFPKFFRYTAMANDVAASLDRQGLCSSSGKLRQSGRKGPASKGCSEPAKFLLKCFDAMSHFLELEGEEADSPIEGIIAPQLTRGPSS 459
            RARLSAGVACLWAGIGVGAML GQTAEAT+ YAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDF KFFRYTAMANDVAASLDRQ                   +GCSEPAKFLLKCFDAMSHFLELEGEE++SPIEGIIAP L  G SS
Sbjct:  245 RARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQ------------------QQGCSEPAKFLLKCFDAMSHFLELEGEESNSPIEGIIAPPLAHGASS 379
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10949.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQB9_9PHAE2.230e-6983.23Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LBZ1_ECTSI4.090e-6580.39Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10949contigH-canaliculatus_F_contig10949:2..2706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size859
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10949.874.1prot_H-canaliculatus_F_contig10949.874.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10949 2..2706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.0737844-CDS-H-canaliculatus_F_contig10949:1..4391622928766.0737844-CDS-H-canaliculatus_F_contig10949:1..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 2..439 -
1696845555.3409019-CDS-H-canaliculatus_F_contig10949:1..4391696845555.3409019-CDS-H-canaliculatus_F_contig10949:1..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 2..439 -
1622928766.086306-CDS-H-canaliculatus_F_contig10949:672..7681622928766.086306-CDS-H-canaliculatus_F_contig10949:672..768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 673..768 -
1696845555.3524919-CDS-H-canaliculatus_F_contig10949:672..7681696845555.3524919-CDS-H-canaliculatus_F_contig10949:672..768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 673..768 -
1622928766.098576-CDS-H-canaliculatus_F_contig10949:1225..12851622928766.098576-CDS-H-canaliculatus_F_contig10949:1225..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 1226..1285 -
1696845555.3657644-CDS-H-canaliculatus_F_contig10949:1225..12851696845555.3657644-CDS-H-canaliculatus_F_contig10949:1225..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 1226..1285 -
1622928766.110655-CDS-H-canaliculatus_F_contig10949:1751..18651622928766.110655-CDS-H-canaliculatus_F_contig10949:1751..1865Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 1752..1865 -
1696845555.375968-CDS-H-canaliculatus_F_contig10949:1751..18651696845555.375968-CDS-H-canaliculatus_F_contig10949:1751..1865Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 1752..1865 -
1622928766.1222866-CDS-H-canaliculatus_F_contig10949:2556..27061622928766.1222866-CDS-H-canaliculatus_F_contig10949:2556..2706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 2557..2706 -
1696845555.386165-CDS-H-canaliculatus_F_contig10949:2556..27061696845555.386165-CDS-H-canaliculatus_F_contig10949:2556..2706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10949 2557..2706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10949.874.1

>prot_H-canaliculatus_F_contig10949.874.1 ID=prot_H-canaliculatus_F_contig10949.874.1|Name=mRNA_H-canaliculatus_F_contig10949.874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=286bp
RARLSAGVACLWAGIGVGAMLRGQTAEATAHYAENAREAIKGCYDVVSEE
VLRAFLCLAHMHSFREDFPKFFRYTAMANDVAASLDRQGLCSSSGKLRQS
GRKGPASKGCSEPAKFLLKCFDAMSHFLELEGEEADSPIEGIIAPQLTRG
PSSPSKPGGSTPQGPEGCTSRESASDAGGRGGGEGLQQQSAAAASAGAGA
ASAEADEVGGERGAGGGARNSHCAAAAAASGAARAVTAAAASTTCCPGSA
AVGTGDGDGSVREGSGWPHGVVSKGGSADREREGGG
back to top

mRNA from alignment at H-canaliculatus_F_contig10949:2..2706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10949.874.1 ID=mRNA_H-canaliculatus_F_contig10949.874.1|Name=mRNA_H-canaliculatus_F_contig10949.874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2705bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10949:2..2706- (Hapterophycus canaliculatus Oshoro5f female)
AGGGCGAGGCTCTCGGCGGGGGTGGCGTGTCTGTGGGCGGGGATAGGGGT
CGGGGCGATGCTGCGGGGGCAGACGGCGGAGGCGACGGCACACTACGCGG
AGAACGCGAGGGAGGCCATCAAGGGGTGCTACGACGTCGTGTCCGAGGAG
GTAAGGTGGAGACAAATGCGGTGGAGACGATGTGGTGCTGCGTGCGTGGG
AAATGGTGGCGGTGGTGGTTTGAGCTTCCCTTTGGTTCGGTGTTGCAATC
TGCAAACCCCTAAAGCGTGTTTGTTTTCTCATTCCGGGTGCTCTCGCCGA
AGCTGACGGAAATAAGGTCAATAATTGAGTTTAGGCTTCCGATCGACTCT
CGTCTCGGCGGGCGCGTTCCTTATTTCATGTAAAAAGTAACAACATGCTG
TAGGTGGATGGGGTAAGGTGTTCGGCGTGTCGTCTGTCTCCGTGTTGTGC
ATATGCCGCCGAATGCTTGTTTTTTTTCGTCTGATCTGCGTGCTTTGTCG
TGTGCCTCGACCTTACAATCGCGTTGTTTCCAGTCTCGATGTCGAGTTCT
CTTTTTTTGTGCTCTTGAGCGCTGCGCTTCTTGTCCCGAGTCTCGTGTGC
CGTGTGACCCTGGTCAGGTGCTGCACACCGGGCACTTTGTGCGCCGGCTC
TGACGCCTCGTGTGACTTCAGGCCTCGTGTTGAATCGCCCTTGTCGCCGC
CGGCTTTTCGTATCCAGCCGGTTGCGTTGTCTTTTTTTGTTCCGTTCTTG
CTCTTTTTTTCGTGTGGGCTTTCCTGTTCTTGACGCAACGGTGCTGTCCC
TGCCGACGGTTCCTTCCCTTCGCCGGCTGGCGTGTCTCCAGGTTTTGAGA
GCTTTCTTGTGCCTGGCGCACATGCACTCCTTCCGCGAAGACTTCCCGAA
GTTCTTCCGCTACACCGCCATGGCCAACGACGTGGCGGCTTCCCTTGACC
GGCAGGTAGAGTAAAATGTTTCGCCGCCCAAGTGAACAATTTGGGGGGCG
CAGCAGAGCCTCGAGCTACGCCTCTCACGACGTACCTCAGGAGGCGTTCC
AACGGTGTTGTGATGTGTTGCTTCGTAACATTCGAGGGGCGCAGGCGGGG
AAGTACAAGAGGGAATTGGCTCGCTGGGCCTTTCGTCTGAGCGCGTCTTG
GGTACGGTGATGGACGACAGTGATGCCGTCCAGTGATGCCGTCCAGGAGG
ACCCCGCAACCCTCTCGTCGTTCTGTCCATCACCCCGTCGTTGTCGCCGC
CGCAGAGTTGGGTGCCTCCGGTGGTACTTTTTGCACCCCAGTGGCATCCC
GCGACCGACTCTTCGGCCCTCTTTTCCTCCCTTCCCTTCCCTTCCCTTCT
CCCGCCCACCGTCACGTGCTGTGTACCCCCGTCACCTCTCCCTCTCCCGG
GGCTATGCCGCCTTGTTGCAGGGACTGTGCTCTTCTTCCGGAAAGCTTCG
ACAATCCGGCAGGAAAGGCCCCGCGTCCAAGGTAAGCTGCGGTAAGCTGC
GCGCGTGGAGGACACAGCCGCCGCGTATCGGCGTGCAGCCAGCGTGGTCG
TCGTTGGGGCCGTGATACGTTGCTCTGCTTTTCGTAGTAGTCGCAGGTGC
CGAGACGGCGATGTTTTGTGCTGCTGCTGCTGCTGCTCGTGTTGGCGTCC
GGACTATGTCTCTCTCTCTAGCGTGCCCCCCCCCGTCTTGGAGCCCCGTC
TATCATGAGATGCGTCGCCACGGCGCGGTGCACAGGCACGCGGTCTGTGC
GACGAAGATACTCTGAGTATTGGGAGCTGGTGTGGTCGCAAGGTTAGTGG
CGCCGTGCCGGAGTTTCGGCTGGAGCGTGGGTTGAGGTTCGTTGTTTAGG
CGTACGCGCCGTGTGTGATAGCTGATGCGCCAACCCCCCCCCCCCCGGTC
CCTGCCCTGCTCGCCTCATTTCAAAACATTGGCTGCAGGGATGCTCCGAA
CCGGCCAAGTTTCTTCTGAAGTGCTTCGATGCCATGAGTCACTTCTTGGA
GCTTGAAGGAGAGGAGGCCGACTCGCCCATAGAGGTGAGGAGGGGAGAGA
GTGGAGGAAGTCAGGAGGGTCGTGTATCACGGAGGGGGCACACAGCCAGC
CAGTGGGGAAAGTGGTGTCGGGTATGAGGATGAGCCAAGATGAATCCAGC
GATGCAAACTCAAGCTCAAGAGGCATGTCGCACATCGAGATGTCCAACTG
AAGACGACCCCATCCCCTCTCCCCTTTCATCCGATCCTATGACGGTCGCC
ATCGCTGTCGCTGAAAGGGAATCATCGCTCCGCAGTTGACTCGCGGTCCC
AGCAGCCCCAGCAAGCCCGGCGGATCGACACCCCAAGGACCAGAAGGATG
CACCAGCAGAGAAAGCGCAAGCGACGCGGGAGGCAGGGGCGGGGGCGAAG
GGCTGCAGCAACAAAGCGCCGCTGCTGCTTCCGCCGGCGCGGGCGCCGCC
TCCGCCGAAGCGGACGAGGTCGGCGGAGAAAGAGGAGCAGGAGGAGGGGC
TCGAAACTCCCACTGTGCTGCCGCGGCTGCAGCGTCTGGGGCAGCTAGGG
CAGTCACTGCAGCAGCAGCCTCTACTACTTGTTGTCCGGGGAGTGCTGCG
GTCGGTACCGGGGACGGGGACGGTAGCGTGCGCGAGGGCAGCGGTTGGCC
GCACGGTGTGGTATCGAAGGGGGGGTCGGCGGACCGGGAGAGGGAGGGAG
GCGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10949:2..2706-

>mRNA_H-canaliculatus_F_contig10949.874.1 ID=mRNA_H-canaliculatus_F_contig10949.874.1|Name=mRNA_H-canaliculatus_F_contig10949.874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1716bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10949:2..2706- (Hapterophycus canaliculatus Oshoro5f female)
AGGGCGAGGCTCTCGGCGGGGGTGGCGTGTCTGTGGGCGGGGATAGGGGT
CGGGGCGATGCTGCGGGGGCAGACGGCGGAGGCGACGGCACACTACGCGG
AGAACGCGAGGGAGGCCATCAAGGGGTGCTACGACGTCGTGTCCGAGGAG
AGGGCGAGGCTCTCGGCGGGGGTGGCGTGTCTGTGGGCGGGGATAGGGGT
CGGGGCGATGCTGCGGGGGCAGACGGCGGAGGCGACGGCACACTACGCGG
AGAACGCGAGGGAGGCCATCAAGGGGTGCTACGACGTCGTGTCCGAGGAG
GTTTTGAGAGCTTTCTTGTGCCTGGCGCACATGCACTCCTTCCGCGAAGA
CTTCCCGAAGTTCTTCCGCTACACCGCCATGGCCAACGACGTGGCGGCTT
CCCTTGACCGGCAGGTTTTGAGAGCTTTCTTGTGCCTGGCGCACATGCAC
TCCTTCCGCGAAGACTTCCCGAAGTTCTTCCGCTACACCGCCATGGCCAA
CGACGTGGCGGCTTCCCTTGACCGGCAGGGACTGTGCTCTTCTTCCGGAA
AGCTTCGACAATCCGGCAGGAAAGGCCCCGCGTCCAAGGGACTGTGCTCT
TCTTCCGGAAAGCTTCGACAATCCGGCAGGAAAGGCCCCGCGTCCAAGGG
ATGCTCCGAACCGGCCAAGTTTCTTCTGAAGTGCTTCGATGCCATGAGTC
ACTTCTTGGAGCTTGAAGGAGAGGAGGCCGACTCGCCCATAGAGGGATGC
TCCGAACCGGCCAAGTTTCTTCTGAAGTGCTTCGATGCCATGAGTCACTT
CTTGGAGCTTGAAGGAGAGGAGGCCGACTCGCCCATAGAGGGAATCATCG
CTCCGCAGTTGACTCGCGGTCCCAGCAGCCCCAGCAAGCCCGGCGGATCG
ACACCCCAAGGACCAGAAGGATGCACCAGCAGAGAAAGCGCAAGCGACGC
GGGAGGCAGGGGCGGGGGCGAAGGGCTGCAGCAACAAAGCGCCGCTGCTG
CTTCCGCCGGCGCGGGCGCCGCCTCCGCCGAAGCGGACGAGGTCGGCGGA
GAAAGAGGAGCAGGAGGAGGGGCTCGAAACTCCCACTGTGCTGCCGCGGC
TGCAGCGTCTGGGGCAGCTAGGGCAGTCACTGCAGCAGCAGCCTCTACTA
CTTGTTGTCCGGGGAGTGCTGCGGTCGGTACCGGGGACGGGGACGGTAGC
GTGCGCGAGGGCAGCGGTTGGCCGCACGGTGTGGTATCGAAGGGGGGGTC
GGCGGACCGGGAGAGGGAGGGAGGCGGGGGAATCATCGCTCCGCAGTTGA
CTCGCGGTCCCAGCAGCCCCAGCAAGCCCGGCGGATCGACACCCCAAGGA
CCAGAAGGATGCACCAGCAGAGAAAGCGCAAGCGACGCGGGAGGCAGGGG
CGGGGGCGAAGGGCTGCAGCAACAAAGCGCCGCTGCTGCTTCCGCCGGCG
CGGGCGCCGCCTCCGCCGAAGCGGACGAGGTCGGCGGAGAAAGAGGAGCA
GGAGGAGGGGCTCGAAACTCCCACTGTGCTGCCGCGGCTGCAGCGTCTGG
GGCAGCTAGGGCAGTCACTGCAGCAGCAGCCTCTACTACTTGTTGTCCGG
GGAGTGCTGCGGTCGGTACCGGGGACGGGGACGGTAGCGTGCGCGAGGGC
AGCGGTTGGCCGCACGGTGTGGTATCGAAGGGGGGGTCGGCGGACCGGGA
GAGGGAGGGAGGCGGG
back to top