mRNA_H-canaliculatus_F_contig10923.862.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10923.862.1
Unique NamemRNA_H-canaliculatus_F_contig10923.862.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A6H5JD21_9PHAE (Aa_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD21_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 2.210e-106
Identity = 165/213 (77.46%), Postives = 182/213 (85.45%), Query Frame = 1
Query:    1 KACIQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVALVS 639
            +ACIQ+PLSWVR+LKYLG GMLIAN+CVFGGL+LILF++  +L +   PEN GG IVLIN +ECLILLGSVVGCFEGIGLVLPI+DAMDLKVR RLPAALCWTM GIT FFV FGAAGYL YE+EVA+FITMDLP+DTVA T VR+MYSVGLILTSPLQLFPAIKVLER+FWPV   GS   K     R RKWLKNLLRS VV FTVLVALV+
Sbjct:  180 QACIQIPLSWVRQLKYLGAGMLIANICVFGGLLLILFQVVDQLIDTFPPENAGG-IVLINTSECLILLGSVVGCFEGIGLVLPIEDAMDLKVRHRLPAALCWTMVGITTFFVIFGAAGYLTYEQEVASFITMDLPQDTVAATIVRVMYSVGLILTSPLQLFPAIKVLERLFWPVVPRGS---KKDMLDRTRKWLKNLLRSVVVVFTVLVALVA 388          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: D7FZM6_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM6_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 9.710e-106
Identity = 166/213 (77.93%), Postives = 183/213 (85.92%), Query Frame = 1
Query:    1 KACIQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVALVS 639
            +ACIQ+PLSWVR+LKYLG GMLIAN+CVFGGL+LILF++  +L +   PEN GG IVLIN +ECLILLGSVVGCFEGIGLVLPI+DAMDLKVR RLPAALCWTM GI+ FFV FGAAGYL YE+EVANFITMDLP+DTVA T VR+MYSVGLILTSPLQLFPAIKVLERIFWPV   GS +  P    R RKWLKNLLRS VV FTVLVALV+
Sbjct:  341 QACIQIPLSWVRQLKYLGAGMLIANICVFGGLLLILFQVVDQLIDTFPPENAGG-IVLINTSECLILLGSVVGCFEGIGLVLPIEDAMDLKVRHRLPAALCWTMVGISTFFVIFGAAGYLTYEQEVANFITMDLPQDTVAATIVRVMYSVGLILTSPLQLFPAIKVLERIFWPVAPGGSKKDMP---DRTRKWLKNLLRSVVVVFTVLVALVA 549          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A835Z0U8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.090e-36
Identity = 94/243 (38.68%), Postives = 124/243 (51.03%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAF---GA------------------------------AGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVALVS 639
            I  PL+ VRR+         AN  +  GL L L+ +A +   +   E    G+V++NP   L++LGS V  FEGIGL+LPIQDAM   +R R  A LC   AG+  FF+ F   GA                              AGYLA+  EV  F+TM LP  +  G  VRI+YSVG++LT PLQLFPA K+ E + W  P E +  + P +    R+W KN LR  V G   L+AL+ 
Sbjct:  331 IYAPLACVRRIXXXXXXXXFANAGLLVGLTLTLWHVATQYAVDGAAE----GVVMLNPRRTLMVLGSAVASFEGIGLILPIQDAMAPALRHRFNALLCACSAGVVTFFLLFELQGALQASSVVDAPRRGSKCAAAQASAERIPRRLAGYLAFGPEVPEFVTMTLPVHSTEGKLVRILYSVGIMLTFPLQLFPATKIFEAMIW-TPLESA--RPPTQR---RRWGKNALRMGVCGGVALLALLG 563          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: D8LNN4_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 6.230e-36
Identity = 85/213 (39.91%), Postives = 126/213 (59.15%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVALVSFVG 648
            + +P++W+R LKYL + M  ANVC++ GL+LI+   A  L  E  PE     ++  N    +I +G+VV CFEGIGLVLP++D+M+  +R + P  +   M  +   F  FG  GYLAY + +  F+TM++P     G     +YS+ ++++ PLQLFPA+K LE   +     G+LR++       RKWLKN LR+AVV  T   A+  FVG
Sbjct:  309 VYIPMAWIRHLKYLALAMFGANVCMWLGLILIVGIDAELLMREG-PEP----VLQYNLDTFIIFVGAVVVCFEGIGLVLPLRDSMEPHMRHKFPGVVRVAMLFLAIVFCIFGCLGYLAYGEGIETFVTMNIPAGHPVGALSVGLYSIAIMMSYPLQLFPAVKCLEGHLF-----GALRQRSLL----RKWLKNTLRAAVVLATAAFAM--FVG 505          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A1Q3A9Y6_ZYGRO (Aa_trans domain-containing protein n=3 Tax=Zygosaccharomyces rouxii TaxID=4956 RepID=A0A1Q3A9Y6_ZYGRO)

HSP 1 Score: 136 bits (342), Expect = 2.350e-33
Identity = 73/218 (33.49%), Postives = 124/218 (56.88%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWP------VPAEGSLRKKPAKGGRGR-----KWLKNLLRSAVVGFTVLVA 630
            I +PLS++R +  L +  L+AN  V GGLV++LF    +L  E   +   G ++L N     + +G+ +  FEGIGLV+P+QD+M  +  ++ P  L   +   T  F+  G+ GYLAY  ++   I ++LP+  ++   +++ YS+ ++L++PLQLFPAIK++E   +P      V  + +      +   G+     KWLKN +RS +VG  +L+A
Sbjct:  429 IFIPLSFIRNVSKLSLPSLLANFFVMGGLVIVLFFSLKQLAFESHMKPADGVVLLFNTNRWTMFIGTAIFAFEGIGLVIPVQDSM--QHPEKFPLVLGMVIITSTVLFITIGSIGYLAYGSKIKTVILLNLPQTNISVNLIQLFYSIAIMLSTPLQLFPAIKIIENKVFPKFIKIYVKNDDNTTGVEMRPNSGKLNWKVKWLKNFVRSLIVGSVILMA 644          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A4C2EEW0_9SACH (Aa_trans domain-containing protein n=1 Tax=Zygosaccharomyces mellis TaxID=42258 RepID=A0A4C2EEW0_9SACH)

HSP 1 Score: 133 bits (334), Expect = 2.880e-32
Identity = 71/218 (32.57%), Postives = 124/218 (56.88%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWP------VPAEGSLRKKPAKGGRGR-----KWLKNLLRSAVVGFTVLVA 630
            I +PLS++R +  L +  L+AN  V GGLV++LF    +L  E   +   G ++L N +   + +G+ +  FEGIGLV+P+Q +M  +  ++ P  L   +   T  F+  G+ GYLAY  ++   I ++LP+  ++   +++ YS+ ++L++PLQLFPAIK++E   +P      +  + +      +   G+     KWLKN +RS +VG  +L+A
Sbjct:  430 IFIPLSFIRNVSKLSLPSLLANFFVMGGLVIVLFFSLKQLAIESHMKPAEGVVLLFNTSRWTMFIGTAIFAFEGIGLVIPVQGSM--QHPEKFPLVLAMVIITSTVLFITIGSIGYLAYGSKIKTVILLNLPQRNLSVNLIQLFYSLAIMLSTPLQLFPAIKIIENKVFPKFIKIYIKNDDNTTGVEMRPNSGKLNWKVKWLKNFVRSLIVGSVILMA 645          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: K3X5P2_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5P2_GLOUD)

HSP 1 Score: 130 bits (326), Expect = 1.790e-31
Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTT--VRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVA 630
            +  PL+WVRR++Y  +  LIA+V +  GL+ I+     +L       +T       N     + LG+ V CFEGIGLVLPI DAMD K++ + P  +  T+  +   F  F    Y A+ ++  + +T++LP  +V+G T  V+I YS+ L+LT PL L+P +K+LE  F+P       +K+  KG    +W KN  R A+V  T  +A
Sbjct:  302 LYTPLTWVRRIEYFAMTNLIADVLILFGLIYIIGYSVERLEAAPPDSSTWENF---NSKSWALFLGTAVYCFEGIGLVLPIYDAMDSKIQHKFPKIISLTILFLVVLFSLFAGVVYAAFGQDTQSVVTLNLPNASVSGATMTVQITYSLALVLTYPLMLYPVVKILETYFFP-------QKRRVKGYW--RWQKNGFRFALVCLTAAIA 498          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A4D9DAI5_9STRA (Aa_trans domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAI5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.500e-31
Identity = 86/208 (41.35%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVAL 633
            I VPLSW+R +KYL    L+AN+ V  GLV  L      L  +        GI + N A C + LGSV   FEG+ LVLPI+ +M  K  +R  A +  +MAG+     + GA GYLA+   V  F+T +LP   V G  VRIMYS+ +I T PLQLFP   +LE     V   G +   P++    RK  KN+LR  VV  T L A+
Sbjct:  265 IYVPLSWLRHIKYLATANLVANIFVGVGLVACLVWSCTVLATD----GPAPGIHMFNRASCFLFLGSVAVAFEGMSLVLPIKRSM--KRPERFEALVATSMAGLCVLVWSIGAMGYLAFGNSVEPFVTNELPTQGVLGPAVRIMYSLAIICTYPLQLFPGTIILEEYL--VEPMGLV---PSR----RKVAKNVLRLLVVVGTCLTAI 457          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A3M6VUN4_9STRA (Aa_trans domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUN4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.210e-31
Identity = 77/209 (36.84%), Postives = 114/209 (54.55%), Query Frame = 1
Query:   10 IQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLP--EDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRSAVVGFTVLVA 630
            +  PL+WVRR++Y  +  L A++ +  G+V I+      L E  +   T       N     +LLG+ V CFEGIGLVLPI DAMD  +R + P  L +TM  +   F  F    Y A+ ++  + +T++LP  +D++A  TV+I YS+ L+LT PL L+P +K+LE         G L    ++ G  R W KN  R A+V FT  +A
Sbjct:  295 LYTPLTWVRRIEYFALTNLFADLLILFGIVYIMSYTMQTLDEAPVGSATWENF---NSTSWAMLLGTAVYCFEGIGLVLPIYDAMDDDIRHKFPRILSYTMLFLVTLFSVFAGLVYAAFGQDTQSVVTLNLPSAQDSIATMTVQITYSLALVLTYPLMLYPVVKILE---------GYLFSHHSQKGYWR-WEKNGFRFALVCFTAAIA 490          
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Match: A0A7H9HR85_9SACH (Aa_trans domain-containing protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HR85_9SACH)

HSP 1 Score: 129 bits (324), Expect = 6.440e-31
Identity = 69/216 (31.94%), Postives = 117/216 (54.17%), Query Frame = 1
Query:   16 VPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPENTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAALCWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSVGLILTSPLQLFPAIKVLERIFWP------VPAEGSLRKKPAKGGRGR-----KWLKNLLRSAVVGFTVLVA 630
            +PLS++R +  L +  L+AN CV  GL+++L+     L  E       G I+  N     + +G+ +  FEGIGL++P+QD+M  K  ++ P  L   +   T  F+A  + GYLAY +++   I ++LP+  +    ++  YS+ ++L++PLQLFPAIK++E   +P      V  E        +   G+     KWLKN +R+ +V   +L+A
Sbjct:  426 IPLSFIRNVSKLSLPSLLANFCVMAGLIIVLYFSGKHLIVEQHMRAAEGVIMGFNSNRWSMFVGTAIFAFEGIGLIIPVQDSM--KHPEKFPLLLALVIGSSTVLFIAIASVGYLAYGRDIKTVILLNLPQQNIFVNLIQFFYSLAIMLSTPLQLFPAIKIIENKVFPKFTKIYVKREDETTDIEWRPNSGKLSWKVKWLKNFVRAIIVALVILMA 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10923.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD21_9PHAE2.210e-10677.46Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
D7FZM6_ECTSI9.710e-10677.93Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z0U8_9STRA6.090e-3638.68Transmembrane amino acid transporter protein-domai... [more]
D8LNN4_ECTSI6.230e-3639.91Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A1Q3A9Y6_ZYGRO2.350e-3333.49Aa_trans domain-containing protein n=3 Tax=Zygosac... [more]
A0A4C2EEW0_9SACH2.880e-3232.57Aa_trans domain-containing protein n=1 Tax=Zygosac... [more]
K3X5P2_GLOUD1.790e-3135.89Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A4D9DAI5_9STRA2.500e-3141.35Aa_trans domain-containing protein n=2 Tax=Monodop... [more]
A0A3M6VUN4_9STRA3.210e-3136.84Aa_trans domain-containing protein n=1 Tax=Peronos... [more]
A0A7H9HR85_9SACH6.440e-3131.94Aa_trans domain-containing protein n=2 Tax=Torulas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10923contigH-canaliculatus_F_contig10923:568..4003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue2.5e-86
Seed eggNOG ortholog2880.D7FZM6
Preferred nameAVT4
KEGG koko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko04138,map04138
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0006868,GO:0007034,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015186,GO:0015188,GO:0015189,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015802,GO:0015803,GO:0015804,GO:0015807,GO:0015809,GO:0015817,GO:0015824,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0032974,GO:0034220,GO:0034486,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044232,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046618,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061459,GO:0071702,GO:0071705,GO:0089707,GO:0089708,GO:0089709,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990816,GO:1990818,GO:1990822,GO:1990961
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-17_003820.1
Exons5
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10923.862.1prot_H-canaliculatus_F_contig10923.862.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10923 568..4003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928762.3478565-CDS-H-canaliculatus_F_contig10923:567..7231622928762.3478565-CDS-H-canaliculatus_F_contig10923:567..723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 568..723 -
1696845554.4565442-CDS-H-canaliculatus_F_contig10923:567..7231696845554.4565442-CDS-H-canaliculatus_F_contig10923:567..723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 568..723 -
1622928762.3570855-CDS-H-canaliculatus_F_contig10923:1455..15541622928762.3570855-CDS-H-canaliculatus_F_contig10923:1455..1554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 1456..1554 -
1696845554.470743-CDS-H-canaliculatus_F_contig10923:1455..15541696845554.470743-CDS-H-canaliculatus_F_contig10923:1455..1554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 1456..1554 -
1622928762.3665643-CDS-H-canaliculatus_F_contig10923:1929..20701622928762.3665643-CDS-H-canaliculatus_F_contig10923:1929..2070Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 1930..2070 -
1696845554.481358-CDS-H-canaliculatus_F_contig10923:1929..20701696845554.481358-CDS-H-canaliculatus_F_contig10923:1929..2070Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 1930..2070 -
1622928764.416804-CDS-H-canaliculatus_F_contig10923:3049..31901622928764.416804-CDS-H-canaliculatus_F_contig10923:3049..3190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 3050..3190 -
1696845554.4910414-CDS-H-canaliculatus_F_contig10923:3049..31901696845554.4910414-CDS-H-canaliculatus_F_contig10923:3049..3190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 3050..3190 -
1622928764.42809-CDS-H-canaliculatus_F_contig10923:3889..40031622928764.42809-CDS-H-canaliculatus_F_contig10923:3889..4003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 3890..4003 -
1696845554.5014951-CDS-H-canaliculatus_F_contig10923:3889..40031696845554.5014951-CDS-H-canaliculatus_F_contig10923:3889..4003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10923 3890..4003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10923.862.1

>prot_H-canaliculatus_F_contig10923.862.1 ID=prot_H-canaliculatus_F_contig10923.862.1|Name=mRNA_H-canaliculatus_F_contig10923.862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
KACIQVPLSWVRRLKYLGVGMLIANVCVFGGLVLILFELAGKLGEEDLPE
NTGGGIVLINPAECLILLGSVVGCFEGIGLVLPIQDAMDLKVRDRLPAAL
CWTMAGITAFFVAFGAAGYLAYEKEVANFITMDLPEDTVAGTTVRIMYSV
GLILTSPLQLFPAIKVLERIFWPVPAEGSLRKKPAKGGRGRKWLKNLLRS
AVVGFTVLVALVSFVG*
back to top

mRNA from alignment at H-canaliculatus_F_contig10923:568..4003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10923.862.1 ID=mRNA_H-canaliculatus_F_contig10923.862.1|Name=mRNA_H-canaliculatus_F_contig10923.862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3436bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10923:568..4003- (Hapterophycus canaliculatus Oshoro5f female)
AAGGCGTGCATACAGGTACCCCTATCTTGGGTGAGACGGCTCAAGTACCT AGGAGTGGGGATGCTGATCGCGAACGTGTGCGTCTTCGGGGGGCTAGTGC TCATACTGTTTGAGGTGAGACATTTCATCACGAGGCCTCGAAGCCGCTCA CTTACCTCCGAGGACGAGGGTAAGGTTAAACACACGTTTGGTCGCATGAG AAAAAAATACACCCCTGTGATTGGAGCTTTCTCCAAAGCTCGCATACAGT ACCTGTACCCACAACGAAGAGGGTTTCCACACCAAACGGCACGTTTCCAG ACAGCTCTCGGGGAGAAGTCTGATATGGATTGATCAACGTTTGTAAATCG TTCGGAGGGGTATGGTACCTTGTGCGCCGTACGGTAGTGAGCCTCAACCC CTTAGGCGCCCGTGCCCGCTGCTGCTTGCGGGAGTGCAGCTTTCCTTCAT GTGCTTTTGTGAGTCAGGTCGAACCGTGTCGATTTGTGTGACGCCAACCG TCGTCGCCGATCTTCCCTGCTCGTAGTCGGGCATCTACTGCTGTTCCAGA TACGCTTCGTGAGGCGGAGGAACCGGTAGAGTGGCTTCGACAGGACAGAG GGTGCGGCAGTCAACGTTCCAAAACTCGTCGTACCTACCAGCCCAAGCTT TCTCCAACTCTGTCTTGGGTTGTAGATCCCTGTTCTTCCCCTTGCCGTCA TCGTCCGACCTCTCCGTCTACCCCTGCCGTCGCTTCGCCTCGCGTCCCGC CCGCCTTCCTCGTGGCATCCCCAATTGCCGCCGCGATTGTCTGCCTGCTG TCGTGGCCGCCAGCTGGCGGGCAAGCTCGGGGAAGAAGACCTGCCCGAAA ACACGGGCGGCGGGATCGTGCTCATCAACCCCGCTGAGTGCCTCATCCTC CTGGGCTCCGTGGTGGGCTGCTTCGAGGGCATCGGGTTGGTTCTGCCCAT TCAAGTGAGGGCAGCAGATTCAAGACGGCTACCCGTGGTGGTGGATTTTG TGCGTTCGAGTGGAAGCATCCGGGGAGGACTTGAGGCCTTTTTTTGTGCT GCGAAGAGAGTGGCCGATATACCGGAAGGACGGGGGGGGGGGGGGGGGCC CAACCGAGGGTCGCCGGGGGGGGGGCAGAAGGACGGGGGGTTTTTTTGGG GCGCAGGTCTGATGCCGATATTGTGGCCCCCCCCNNNNNNNNNNGGGGGG GGGGGGGGGGGGGGGGGTTGGTGGTGTTGTGGGGGGGGGGGGGGGGGGGG GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCTCAACCGAGAGTCG CCGCGAGGAGGTCAGAAGGACGGAGGATTTTTTTGCGGCGCAGATCTGAT GCCGATATTGTGAGCCCCCCCTGGAGTTCTTGTTGTCATTGTTTGCGCTC CGAAGAGAGTTCTTTTAAGGCCATCGGATTGGCACTTCCTTCCCATTCCA ATGAGAATCGCTCGTGTAACCCCTTCCCAGAAAAACCCTTCCCAGAAAGC CTTCCCAGCAGAGCCTGTCTCGGACTCGAAGAGTAGAACTCGAAAAATAA AACTCGAAAAGTAGTCGAAGTACAAGCAGCACTCGTTAGGATGATCACGG CGTCTTGTCGGTGGGGCTGCCTTCGGCGTTCGTAGACGCGAGAAATACAT GGTACTCGTGGCCGCAAGGCGGTACAGCATTAGATTATGAGATTAGCCTC TCTGTGGAGACCACCTTTAGAAAGGCAAAAGGCTCCCCAAGCGTCTGTCG AGCTGTCGAGGACGAATCCCTCTGTTCTGTTCGAATTGGGCGACTCTCGC AAATGTCTGGACAAGCCGGTCCGCTTCTGAAGGCCGCAATCGTGGTGGGT GACACCTGCCATTGCTGTGACGGGTGGCTAGCCCTGCTGCCGCGAAAGTC TAAGCTGTTCGATCTTGACGCACAAACCCACAGGACGCCATGGACTTGAA AGTGCGAGATCGACTGCCTGCGGCCCTTTGCTGGACGATGGCGGGCATCA CGGCCTTCTTTGTGGCGTTCGGGGCGGCGGGTTACCTGGCGTACGAGAAA GAGGTGGCCAACTTCATCACCATGGTGAGGGCTGTAATAGTGTGTTTGGT TGTGTGGTCGCATGGTTGCCGTGCGGCTGGGCTTTCGAGAGACGGGCCGG ATCGAGGGGCGTTTGAAACTCTAGCGCTTGAATAGATGCCTTTTGAGACA AGGAGGCAGGTGGTGAGGCCTTGAGAGAGGATGGGGGCGGAAAATACATC GAATTTGCCGCTTTGCGTTGTCCGCGCGTTAACCCGGCATCACTGCTGTG ACCGATAGAAAATAGAAAACACGCTGATTCGGTTCGCTGGATCCGCGTAT CAGCGCTTGTGCGGGTGTCGATTGACATCGAGTGCCAACAAACAGACGCA AAATTACCCCACCCCCTCCTCTTCTTTACGTTTTTTCATTTTCTGGCAGG ACTTGCCGGAGGATACAGTGGCCGGGACGACTGTGCGGATCATGTACAGC GTGGGCCTTATTTTGACGTCGCCGCTGCAATTATTCCCGGCCATCAAGGT TAGGCCTCAAACACCGTCGACGAAGAGTCTCGTACATCTGTTGGATTGAA TCGATCTCGGGTGCTGCGGGACTTTTTGCCTAGACGGCGGTGCCGGTCTC TTCCGTGTGCCAGACCATGCTGCGACGAATGAAGTGGCGAATGCGCCTCT GTTTTTCTCTGTTCTTGAAAGCTCCGTTTTTATTTCTTGTCGCTGGAAGA CGTAGTTCGTGTGTTCGCGGAACTTGTCGTGGGCTGGAGTGGCTTCCAAC AAATACTGCCGAGTCAAAGTCAGCCGAGAAGTTGCTACGCTTCTCAAGGA TGTTTGTTCCGTGGATTCCTTTTGGTGGTTCAGCGGGAATGCGGTTGTGC GGCTGCGGCCCTCCTCTCGGCACTGATCAACCAACAGCTATGCAACAACA CTGTCATCTAGCGTTTTCCGATCGTGTCAGTCGTCATGTAAACGGCAGGA TTGGGCGCAAGCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCT CCCCTTCGATATCCCTTGCTGAACGCCCAAAAGTATCCCGTATCGTTGGC AAACCCCAGCGCCTAGCGTGAACGGAAGATGAAAAAGAACAGTTTTCGCG TAACAAAAAGCATCGCAGTTACGAGGGTCGAGGTTGCAGATGCACGCCGG CACTGCTTGTTCGCCGACGGACATTATTTCGTCAGCCGAGACGCTCACAA TTCGATCCCTTCGCTCGACAACTCACTAAGGTGCTGGAGAGAATTTTCTG GCCGGTACCCGCAGAAGGCAGCCTTAGGAAGAAACCGGCGAAGGGGGGGC GGGGGAGAAAGTGGCTCAAGAACTTGCTGCGGTCGGCCGTGGTGGGCTTC ACGGTGCTCGTCGCGCTGGTGAGCTTCGTCGGATAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10923:568..4003-

>mRNA_H-canaliculatus_F_contig10923.862.1 ID=mRNA_H-canaliculatus_F_contig10923.862.1|Name=mRNA_H-canaliculatus_F_contig10923.862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10923:568..4003- (Hapterophycus canaliculatus Oshoro5f female)
AAGGCGTGCATACAGGTACCCCTATCTTGGGTGAGACGGCTCAAGTACCT
AGGAGTGGGGATGCTGATCGCGAACGTGTGCGTCTTCGGGGGGCTAGTGC
TCATACTGTTTGAGAAGGCGTGCATACAGGTACCCCTATCTTGGGTGAGA
CGGCTCAAGTACCTAGGAGTGGGGATGCTGATCGCGAACGTGTGCGTCTT
CGGGGGGCTAGTGCTCATACTGTTTGAGCTGGCGGGCAAGCTCGGGGAAG
AAGACCTGCCCGAAAACACGGGCGGCGGGATCGTGCTCATCAACCCCGCT
GAGTGCCTCATCCTCCTGGGCTCCGTGGTGGGCTGCTTCGAGGGCATCGG
GTTGGTTCTGCCCATTCAACTGGCGGGCAAGCTCGGGGAAGAAGACCTGC
CCGAAAACACGGGCGGCGGGATCGTGCTCATCAACCCCGCTGAGTGCCTC
ATCCTCCTGGGCTCCGTGGTGGGCTGCTTCGAGGGCATCGGGTTGGTTCT
GCCCATTCAAGACGCCATGGACTTGAAAGTGCGAGATCGACTGCCTGCGG
CCCTTTGCTGGACGATGGCGGGCATCACGGCCTTCTTTGTGGCGTTCGGG
GCGGCGGGTTACCTGGCGTACGAGAAAGAGGTGGCCAACTTCATCACCAT
GGACGCCATGGACTTGAAAGTGCGAGATCGACTGCCTGCGGCCCTTTGCT
GGACGATGGCGGGCATCACGGCCTTCTTTGTGGCGTTCGGGGCGGCGGGT
TACCTGGCGTACGAGAAAGAGGTGGCCAACTTCATCACCATGGACTTGCC
GGAGGATACAGTGGCCGGGACGACTGTGCGGATCATGTACAGCGTGGGCC
TTATTTTGACGTCGCCGCTGCAATTATTCCCGGCCATCAAGGACTTGCCG
GAGGATACAGTGGCCGGGACGACTGTGCGGATCATGTACAGCGTGGGCCT
TATTTTGACGTCGCCGCTGCAATTATTCCCGGCCATCAAGGTGCTGGAGA
GAATTTTCTGGCCGGTACCCGCAGAAGGCAGCCTTAGGAAGAAACCGGCG
AAGGGGGGGCGGGGGAGAAAGTGGCTCAAGAACTTGCTGCGGTCGGCCGT
GGTGGGCTTCACGGTGCTCGTCGCGCTGGTGAGCTTCGTCGGATAGGTGC
TGGAGAGAATTTTCTGGCCGGTACCCGCAGAAGGCAGCCTTAGGAAGAAA
CCGGCGAAGGGGGGGCGGGGGAGAAAGTGGCTCAAGAACTTGCTGCGGTC
GGCCGTGGTGGGCTTCACGGTGCTCGTCGCGCTGGTGAGCTTCGTCGGAT
AG
back to top