mRNA_H-canaliculatus_F_contig1092.859.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1092.859.1
Unique NamemRNA_H-canaliculatus_F_contig1092.859.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: D8LH13_ECTSI (Flagellar associated protein, cobalamin adenosyltransferase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH13_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 5.470e-134
Identity = 209/258 (81.01%), Postives = 228/258 (88.37%), Query Frame = 1 
Query:  271 GNVTLTTAIVGGSAGLGYMAYRLISQAQCRASSSTPG----DEGSRGGERYPMIDMAEVARRAVPRKKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKLPAVE 1032
            GNV+L TA+V GS GLGYMA RL SQAQ R+ +   G           +  PM+DMAE+ARRAVPRKKSFLYTR+GDKGTSQLYNMETRPKSDPSFEALGNMDELNA LALA  HS +A+NGLSEML+ IQSLIIDASALVATPRD+SSARKISRTGFPTWCTDQLEACIDELDA+TPPLKTF+VPGGGLAASHLH+ RCVCRRAERSLQPLLGTGQGVEEVARY+NRLSDLLFAAARYAS+VDGKPERPWKKLP ++
Sbjct:    8 GNVSLATALVAGSVGLGYMALRLASQAQRRSLTGANGRXXXXXXXXXXDERPMLDMAEIARRAVPRKKSFLYTRSGDKGTSQLYNMETRPKSDPSFEALGNMDELNASLALAVAHSELARNGLSEMLVAIQSLIIDASALVATPRDNSSARKISRTGFPTWCTDQLEACIDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARYINRLSDLLFAAARYASVVDGKPERPWKKLPVIK 265
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A835Z3S8_9STRA (Cob(I)alamin adenosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S8_9STRA)

HSP 1 Score: 225 bits (573), Expect = 4.500e-64
Identity = 115/197 (58.38%), Postives = 143/197 (72.59%), Query Frame = 1 
Query:  433 VARRAVPR-KKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKL 1020
             ARRAV + KKS LYT+TGDKG S LY+ E R K+D +F+ALG  DELN+ + +A E+ V+A NGL E+L  IQS + D  A +ATPRD +S  K+++T FP  CT ++E  IDELD+K PPLKTF++P GGLAA HLH+ R VCRRAERS  PL+  G+   EV RY+NRLSD LFAAARYAS V+G PE  W K 
Sbjct:   43 AARRAVAKPKKSILYTKTGDKGASSLYSGERRSKTDATFQALGASDELNSVIGVAREYCVLAGNGLDELLAEIQSRLFDVGACIATPRDKASEAKLAKTAFPPKCTMEVEFAIDELDSKLPPLKTFILPSGGLAAVHLHLARVVCRRAERSAIPLVEAGEVDPEVGRYLNRLSDFLFAAARYASHVEGAPETSWVKF 239
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A6H5LRA6_9PHAE (Cob_adeno_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRA6_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 8.050e-64
Identity = 115/148 (77.70%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:  325 MAYRLISQAQCRASSSTPG---DEGSRGGERYPMIDMAEVARRAVPRKKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLE 759
            MA+RL SQAQ R+ +   G     G  GG+  PM+DMAE+ARRAVPRKKSFLYTR+GDKGTSQLYNMETRPKSDPSFEALGNMDELNA LALA  HS +A+NGLSEML+ IQSLIIDASALVATPRD SSARKI+RTGFP WCTDQLE
Sbjct:    1 MAFRLASQAQRRSLTGANGRGSGGGGEGGDERPMLDMAEIARRAVPRKKSFLYTRSGDKGTSQLYNMETRPKSDPSFEALGNMDELNASLALAVAHSELARNGLSEMLVAIQSLIIDASALVATPRDKSSARKINRTGFPAWCTDQLE 148
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A835Z8K8_9STRA (Cobalamin adenosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K8_9STRA)

HSP 1 Score: 211 bits (536), Expect = 9.440e-59
Identity = 113/219 (51.60%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:  358 RASSSTPGDEGSRGGERYPMIDMAEVARRAVPR-KKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPW 1011
            RA S+TPG          P      V+RR   R KKS LYTRTGDKG+S L++ E R K+DP+F A+G  DELN+   +A ++ ++A NGL  +L  IQS ++D  A +ATPR+ S+  K+++T FP  CT +LE  IDELD+K P LKTF++P GGLAA+HLH+ R VCRRAER++ PLL  G    EV RY+NRLSD  FAAARYA++ +G  ER W
Sbjct:   30 RALSNTPGVPPE-----SPFTFKDIVSRRRETRLKKSLLYTRTGDKGSSSLFSGERRSKADPTFHAIGVTDELNSVTGVARQYCLMAGNGLELLLEDIQSRLLDVGAAIATPRNQSNDIKLAKTVFPAACTMELECAIDELDSKLPKLKTFILPSGGLAATHLHIARVVCRRAERTVVPLLEAGHVDPEVGRYINRLSDFYFAAARYAALAEGTEERMW 243
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A7S3GR11_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR11_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.760e-53
Identity = 106/193 (54.92%), Postives = 132/193 (68.39%), Query Frame = 1 
Query:  448 VPRKKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKLPA 1026
            V RKKS LYT+TGDKG S LYN E R K+D  F  LG+ DELNA + +A+E+ +++ NGL  ML  IQS + D  A VATP +SSS  K++ T F    T +LE  ID+LDAK PPL  FV+P GGL+A+HL++ R +CRRAERS+ PL+       EV RY+NRLSDLLFAA R ASM + K E  W K PA
Sbjct:   85 VKRKKSALYTKTGDKGMSSLYNGERRSKNDMIFHTLGHQDELNAAIGVASEYCMLSNNGLQPMLSEIQSRLFDLGAAVATPVNSSSEAKVAYTKFSPKFTARLEEWIDDLDAKLPPLTNFVIPSGGLSATHLNLARTICRRAERSVVPLVEDDLVDGEVGRYLNRLSDLLFAAQRTASMRENKEEFLWIKAPA 277
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A7S1UE78_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE78_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.660e-49
Identity = 96/187 (51.34%), Postives = 132/187 (70.59%), Query Frame = 1 
Query:  460 KSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSA-RKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKK 1017
            KS LYTRTGD G S LYNME R K D  FEALG +DEL+A L +AAEH+++  NGL + + +IQS +ID  A + TPR+++++ RK+ RT FP     +LE   D LD++ PPL+ F++ GGG  A+HLHV R VCRR+ER +  L+ +GQ    V +++NRLSD LFAAARYA++ +GK E  ++K
Sbjct:  114 KSKLYTRTGDGGVSSLYNMERREKDDLVFEALGAVDELHAHLGVAAEHAIMVGNGLHDTIRSIQSRLIDVGAAIGTPRETTTSDRKLKRTEFPEHYVLRLERYADALDSQLPPLRNFILAGGGFCAAHLHVARTVCRRSERVVVGLIRSGQTEPSVGKFLNRLSDTLFAAARYAALCEGKGETAYRK 300
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A6H5LA73_9PHAE (Cob_adeno_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA73_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 7.670e-49
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  757 EACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKLPAVE 1032
            EACIDELDA+TPPLKTF+VPGGGLAASHLH+ RCVCRRAERSLQPLLGTGQGVEEVARY+NRLSDLLFAAARYAS+VDGKPERPWKKLP ++
Sbjct:   13 EACIDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARYINRLSDLLFAAARYASVVDGKPERPWKKLPVLK 104
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: D3B3Q3_POLPP (Cob_adeno_trans domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3Q3_POLPP)

HSP 1 Score: 180 bits (456), Expect = 4.120e-48
Identity = 100/188 (53.19%), Postives = 124/188 (65.96%), Query Frame = 1 
Query:  457 KKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGG-GLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKK 1017
            K+S LYT+TGDKG S L+N E +PK D  F ALGN+DELNA L +A E+ +I  NGL + +  IQSL++D  A  ATP D+S    I +T F       LE  ID LD+K PPLK F+VP G GLA+SHLH+ R +CRRAERS+  L       E V+ ++NRLSD LFAA RYA+M  GK E  WKK
Sbjct:   24 KRSRLYTKTGDKGYSSLFNGERKPKDDDFFNALGNIDELNASLGVALEYCMIDNNGLQDYIEKIQSLMLDVGACCATPLDTSKDSHIQKTKFSDQHVIVLERWIDLLDSKLPPLKNFIVPCGVGLASSHLHLSRAICRRAERSICSLSRHQVIPENVSVFMNRLSDFLFAACRYAAMKSGKNETLWKK 211
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: A0A0L0S926_ALLM3 (ATP:cob(I)alamin adenosyltransferase n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S926_ALLM3)

HSP 1 Score: 179 bits (454), Expect = 4.170e-48
Identity = 95/192 (49.48%), Postives = 129/192 (67.19%), Query Frame = 1 
Query:  469 LYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSAR--KISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKLPAVEDT 1038
            +YT+TGD+GTS L+N E R K+D  FEALG +DEL++C+ +A E    A+NGL E+L  IQ  +ID  + +ATPR +S+    K+ +T F      +LE+ ID+LDA+ PPL  F++P GGLAA+HLH CR V RRAERS+ PL    +  E VA+Y+NR+SD  F AARYA+  +GK ER +     VE T
Sbjct:    3 VYTKTGDRGTSSLFNGERRDKTDVVFEALGAVDELSSCIGVANEFCQAAKNGLEELLFEIQCCLIDVGSNIATPRQASADAPYKLEKTAFDPEHVARLESWIDQLDAQLPPLTNFILPSGGLAATHLHQCRSVARRAERSVVPLARVNEVDEAVAQYLNRVSDFFFVAARYAAKKEGKVERVYIAKRVVERT 194
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BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Match: UPI000644D468 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D468)

HSP 1 Score: 179 bits (454), Expect = 7.070e-48
Identity = 100/188 (53.19%), Postives = 124/188 (65.96%), Query Frame = 1 
Query:  457 KKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELNACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRTGFPTWCTDQLEACIDELDAKTPPLKTFVVPGG-GLAASHLHVCRCVCRRAERSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKK 1017
            K+S LYT+TGDKG S L+N E +PK D  F ALG +DELNA L +A E+ +   NGL E +  IQSL++D  +  ATP D+S    +++T F       LE+ ID LD+K PPLK F+VP G GLA+SHLHV R VCRRAER +  L       E+VA +VNRLSD LFAA RYA+M  GK E  WKK
Sbjct:   21 KRSRLYTKTGDKGYSSLFNGERKPKDDSFFHALGAIDELNATLGVALEYCIADGNGLQEYIEKIQSLMLDIGSCCATPLDTSKESHLAKTRFSDKHVIVLESWIDLLDSKLPPLKNFIVPCGVGLASSHLHVARAVCRRAERDIVSLSRHQVIPEDVAIFVNRLSDFLFAACRYAAMKSGKSESIWKK 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1092.859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH13_ECTSI5.470e-13481.01Flagellar associated protein, cobalamin adenosyltr... [more]
A0A835Z3S8_9STRA4.500e-6458.38Cob(I)alamin adenosyltransferase n=1 Tax=Tribonema... [more]
A0A6H5LRA6_9PHAE8.050e-6477.70Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
A0A835Z8K8_9STRA9.440e-5951.60Cobalamin adenosyltransferase-domain-containing pr... [more]
A0A7S3GR11_9STRA4.760e-5354.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UE78_9STRA1.660e-4951.34Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6H5LA73_9PHAE7.670e-4990.22Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
D3B3Q3_POLPP4.120e-4853.19Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
A0A0L0S926_ALLM34.170e-4849.48ATP:cob(I)alamin adenosyltransferase n=2 Tax=Allom... [more]
UPI000644D4687.070e-4853.19hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1092contigH-canaliculatus_F_contig1092:19894..27821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue3.5e-113
Seed eggNOG ortholog2880.D8LH13
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
EggNOG free text desc.cob(I)yrinic acid a,c-diamide adenosyltransferase activity
EggNOG OGs2QS64@2759,COG2096@1
EC2.5.1.17
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionflagellar associated protein, cobalamin adenosyltransferase-like protein
Ec32 orthologEc-06_010830.1
Exons5
Model size2665
Cds size942
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928762.1301105-UTR-H-canaliculatus_F_contig1092:19893..200191622928762.1301105-UTR-H-canaliculatus_F_contig1092:19893..20019Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1092 19894..20019 +
1696845554.308537-UTR-H-canaliculatus_F_contig1092:19893..200191696845554.308537-UTR-H-canaliculatus_F_contig1092:19893..20019Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1092 19894..20019 +
1622928762.19901-UTR-H-canaliculatus_F_contig1092:26224..278211622928762.19901-UTR-H-canaliculatus_F_contig1092:26224..27821Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1092 26225..27821 +
1696845554.3711436-UTR-H-canaliculatus_F_contig1092:26224..278211696845554.3711436-UTR-H-canaliculatus_F_contig1092:26224..27821Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1092 26225..27821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928762.1392548-CDS-H-canaliculatus_F_contig1092:20019..201451622928762.1392548-CDS-H-canaliculatus_F_contig1092:20019..20145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 20020..20145 +
1696845554.322375-CDS-H-canaliculatus_F_contig1092:20019..201451696845554.322375-CDS-H-canaliculatus_F_contig1092:20019..20145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 20020..20145 +
1622928762.151565-CDS-H-canaliculatus_F_contig1092:23553..238051622928762.151565-CDS-H-canaliculatus_F_contig1092:23553..23805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 23554..23805 +
1696845554.3314621-CDS-H-canaliculatus_F_contig1092:23553..238051696845554.3314621-CDS-H-canaliculatus_F_contig1092:23553..23805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 23554..23805 +
1622928762.1622396-CDS-H-canaliculatus_F_contig1092:24484..247391622928762.1622396-CDS-H-canaliculatus_F_contig1092:24484..24739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 24485..24739 +
1696845554.3403225-CDS-H-canaliculatus_F_contig1092:24484..247391696845554.3403225-CDS-H-canaliculatus_F_contig1092:24484..24739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 24485..24739 +
1622928762.1729653-CDS-H-canaliculatus_F_contig1092:24952..251221622928762.1729653-CDS-H-canaliculatus_F_contig1092:24952..25122Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 24953..25122 +
1696845554.3511415-CDS-H-canaliculatus_F_contig1092:24952..251221696845554.3511415-CDS-H-canaliculatus_F_contig1092:24952..25122Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 24953..25122 +
1622928762.1891282-CDS-H-canaliculatus_F_contig1092:26085..262241622928762.1891282-CDS-H-canaliculatus_F_contig1092:26085..26224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 26086..26224 +
1696845554.3615646-CDS-H-canaliculatus_F_contig1092:26085..262241696845554.3615646-CDS-H-canaliculatus_F_contig1092:26085..26224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 26086..26224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1092.859.1prot_H-canaliculatus_F_contig1092.859.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1092 20020..26224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1092.859.1

>prot_H-canaliculatus_F_contig1092.859.1 ID=prot_H-canaliculatus_F_contig1092.859.1|Name=mRNA_H-canaliculatus_F_contig1092.859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=314bp
MRYACKLASFSSSIIVRSVRQARYSWPRGSKSISGNYSTTNMTQSPGSGN
VTLTTAIVGGSAGLGYMAYRLISQAQCRASSSTPGDEGSRGGERYPMIDM
AEVARRAVPRKKSFLYTRTGDKGTSQLYNMETRPKSDPSFEALGNMDELN
ACLALAAEHSVIAQNGLSEMLMTIQSLIIDASALVATPRDSSSARKISRT
GFPTWCTDQLEACIDELDAKTPPLKTFVVPGGGLAASHLHVCRCVCRRAE
RSLQPLLGTGQGVEEVARYVNRLSDLLFAAARYASMVDGKPERPWKKLPA
VEDTEATPVEKAS*
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mRNA from alignment at H-canaliculatus_F_contig1092:19894..27821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1092.859.1 ID=mRNA_H-canaliculatus_F_contig1092.859.1|Name=mRNA_H-canaliculatus_F_contig1092.859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7928bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1092:19894..27821+ (Hapterophycus canaliculatus Oshoro5f female)
TGCATATCAAAACCAAGCAAGACAGCGCAGCCCACAGCCAGGGCACAACA
GCAGCCGACCACCATCTGTGATCGACCAGGGAAAACACGTGCCGCTTTGA
TTGCGTGGTCTGTGGTCTGACTGGGCATGCGCTACGCTTGCAAGTTGGCA
TCGTTCAGCAGTAGCATCATCGTGAGGAGCGTTAGGCAAGCTCGGTACTC
CTGGCCCAGGGGAAGCAAGTCGATCTCAGGCAATTACTCAACGACAAACA
TGGTGAGAGGTAGACAGACAGATAGGCAAGAGCTCTATGCTGCTATACAA
CACCACACAAACGAATCAAGGTTAATGGTGAATTTGGCGCTGTCTGGAAG
TCGATGACCAACAATGTACCGCCGCAAGGTAAACAATCAGCGTTTCAGGT
CGGGCTACAGCAGTAGTCTTTCCTGCAAAGGACTTTGGCAACAGTATCGC
CTGCTTGGTGCCTTTCTCAAACCACGCGTAATACGCAGAGGCTCCACCGC
TAGTTGCGTTGCAGCTCCACCCGAGCGAATCTTGTGTGCACGTGATACAG
GTCCACTTTGACCTCTCCTTTTAATCGATTAGTGCCACCTCACACGACGG
GCGGCGTATTTTTGTTTTTTTTCGACTTCCAAGGCTGCTCCAGGATTTCC
GATGGTGTCCACAAACACCGAGTGGGTGCTCGATGACGGAGTCACCGACA
GCATCTGTACTCCGAAGAAGACGTTGCAGTGTTCACGAAGATCCTCCCAG
AGTATTGCGCAGTACGATAGCCGTCAGCAAAAAGAGGATGCGTGCATATC
ATACCAAGAAGACGTGCCACATTTTCAAGGCAGGTACAATTTTTTAGTAC
AAGTTCGGCAACCCTCACACCTCTCAGCCAGTACAGTACGACTGCTGTAT
TCTCGTATTCTCTTCCCGAAACTCACCAAACATCGTTCAGACCTTGTGCC
CGAGTTACCCAAGTTTTCAGCGTCTTCCAGCCGGGAGCTGGTACATGTAT
GTGTAAGTGCGTGCAAGGTCAATCATTGCAAGGTCAGGTTACTGATACTG
TAATGTGGTAGGAAGGTATCATCGTAGTAGGCTCGACGACGACACAACCA
AGCACCAGTAGGTAATTTGGCATCACGAGTGCTTCCTTATGCTCCTTGAG
TGGCGTCAAGCGAGCTGTTTCGCGGAGAAACATCCCGTGAAAGGTAGAAG
TAGGCAGCGGAGCCCTTTCCTTTTTTGTGTAGTCTGGGTGTGTACCATGT
ACCATGTACCATACTTTTTGAGTACATACAAGAGTGGATTCGTGCGCTGC
TTGAAGCTTGGAGCTTGACGCTCATTCGTTCGCCACAATGCTCGCACTCT
CCTTCATTCCATCTTCTCTTCCCACCGTCTGGCTCCTTTAAGTACCACCC
GCGCTCCTCCTATGCTCGACCGACGCAAAGTATCACCCCCAAAACGCGTC
TACCACAGGTCGTGAGGTTCGTGAGGCAGGGCAGGCTTACCTTTGCTTCA
GTTTGGCCAATTTGACTCCGACCAAACGAGTTCTATCGTTTTGTACTAAA
ATTTAACAAACGGTCGACTTCGTCCCCCTTTTGGGTAAGCATGAGCACAG
CACAGCAAAGCACAGCAGAGTGGCCTCCGGCAATTTGTAAATTTAAGTGT
GATTGCCTTGCCACAAACGTGACAGGCTGCGGCTGCAGCACTCGTCAAAC
TTGTGGTCCTCTTCGAAGGAGTTTTTCAATCGATCGAGGCCGCTTGGGCT
CTGATGCCGTCACACTTACAGGACATGAATATCTGGCACGGACGCTGACC
TATTATAAAATATCACAGTACCCTTGATTACGGCCACCTGCGACGTCTTA
TATTTCAATAGAAAGAGTCAGCGACACAGTGCACCAAAGGAATACCCTCC
GCTGGGCCAAAGAAATGACGACACAGGAGGATTTTTGTCGAATTCCTTGT
TCACTTTTTGCTCCGTTTTCGCATCCGAAGGTGTTGCTTGACTCCTGTTT
TGTAGAAGCATACATAAAACATAATACCTTGGGTCAGCTCCCCTTCTAGA
GTTACAGTGAAAAAAACGCCTCCACAAGCAAACAAGTACTTAGTTTAATG
TGTATTTCCTTCCAAAAACAACAGTGGGATTCACTTGGGTCAGGGCTACC
CCCAGACTTTTAATTTGTATTTTGTACAAATGGGACATAGAACGTGCAAC
CCGGAACATGCGTCGCTGGTTCAACTGAGACCATACCGTACCGTACCACA
CCACACCACTTTTTCTACAGGGTCGTACTTACACTTTACGTTCTTCATTT
TGAACTGTGGCGTTCACAAAATTGTCCTCTGCAATTGGAAGCCTACAACG
AACCAGCTGGTGAAGAAAAATAGAAAAAGAAAACGGTGATCACGCGGTCA
CACGGTAGGCTCCGTCCCGGAGAAAGAAATATTATTTTACTTATTTTATA
CAGTAGAATGATCAATTTTGACAGCAACACGCCAATAAACCAACAGCAAA
CGTGCCTCGCCACGAAAGTGCGTGAGGCAATGCTGCGTCGATGGCGATGG
CGCTTGTGCGACTAATTTTCGGCGGGGAATCATCCAATGTGCCGAAAACA
ACATGCTTTTGCTCTGCCTCCCGTTGGTTTTTGTAAAGAAAAATATCGCC
TCCTCGCCAGAGCAAAAAGCAGGCGATGCGTCTAGACAAGAATGCACAGC
GGTTGATCTTCCGTGGACGAAGGCGATTCCGTCAGGGCCATCCTTCGTTG
AGTGGCCGTTGTATTGTTCCGTTTTTAGCAGAAAGGAGCACCGCTGTGAA
CACAACTTGATGAACGATCACGCTACCCAGGGTGTGCTTCTTGATGTCAA
ACCTGTTACATCTCCCATCACATTCTGGTTGTTCCCGTGAGATATTTCGG
ACCCAGTGTAAAAGTATGGATGGGGACTAGAGATTTATAGTTCCACCTTC
CTTTCACGTTCTCTCTCTGCATATCACTGCATACCACTGCATACCACTGC
GTACTAACCCTAAATAAAGTGGGAAGCCCCTCCCTTCGCGGTATCTTGCT
GGTCGGGCTTGCCTTGTGATGCCGAAGTATCGGTGTCTCCATCTCGGTAG
ATATCGGCGTAGATAGCGTAGATAGCGTAGACTCGTGTGCAACACTCTTT
CGCGGCTGCCACATCCCGTTCTCTTCAGCAACGCAAAGAAAGGTGCCAGA
TCAGTCACTCGAGCTCGCCGACATTTCGCCACATTGAAGCGGACCATCAC
ATTGTATGTTTGTGTTGATACAAATTGCAGTCGCAACCTCCCCGGTCTGA
CCGTAACGAGCGTCCTGTCCTTCGTGTGAAGTCGCGCGGAATATATCGCA
CAAAGTCTTGATTGCGATGCTACTGCGTTTTGGTGTCTCGGTTTTGCCTT
TGGAGGAAAATATAACATCTCTGCTTGCCTCAGCGGCGTACCTTCCACGT
AGCACCAGTCGTCGAACTGCTGTAGCAGTTACTGTCCCGCAAAGTAAAGT
GACTCACGAAGAAGGCGCTTAGAAATGCGCACTCCAACGGCGGCCAGCAG
GTCCTGAACGAACCAATCGTAACAGCCAAACCTTTTGTCCTCGGTTTTAA
TCGCGGATCATCTTCCTTCGTCCCTTCCTCCCTTCGTCCCCGTCCGCCGA
TGCAACGCAGACGCAATCGCCTGGTAGCGGGAATGTAACCCTCACCACGG
CAATAGTCGGTGGCAGTGCGGGCCTGGGCTACATGGCGTATCGATTGATT
TCGCAGGCGCAATGCCGGGCGTCTTCATCAACGCCTGGTGACGAAGGGAG
CAGGGGGGGGGAGAGGTATCCGATGATTGATATGGCGGAAGTTGCTCGCA
GGGCGGTACCGAGGAAGAAGTCTTTCCTGTACACCAGGACCGGAGATAAA
GGGACATCTCAGGTGACGGTGGCACCAGCAGCGGCATCGATCGGTTTGAA
GGAAGGAGACTTGGGTGGGAAATTTGGCTTTGTCCAACAGACTTACCCAT
GTGCTTGTGTGCTTCTGCGTGACCTTCAGGTGTTGATAGATTGTGGCGAG
TGGCGGGTGGCGACGCGATCTTCACATCCTCACATCCTCACATCCTCACC
GGAACCGCACCTTTCCAGTGTTGGTGGTGCTGGTGGTGTTGGTGGTGCTG
GTGGTGTTCACATCGCGCCCGCCTCCTCAGCTTGAGCAAATCGCGTCGTG
AAACTCTACTCCCACCTTCAAATACTTTTGGTACTTGAGCTTGACCCGCT
GAAAGGATAGTGACAAGTCCAACCTCCTTTCCAATTATCGGAAGATGATG
GGAGATGAACAGACTTTCCGTTGCAGCTGAGAAGTCGTCCCCGTCGATCC
TATCGGAAGGATGCAGTCCTCTTCTCCTGACCAGACGCATACCAGTGCTT
TCACTACGCAGTTGTGCGACCCCTCGCCTCTGCTCTCCGTCACACACGTG
TACAAGGTACAAGGTACAGGGTATGAGTAAGCTTTTGGTGACTGCTGCGC
AACATTGCTACATGCTTCGGCCTCACCCCCCCCCCTAAACACACCCTACC
GTTTTGATAAAATACAACTCCACACGGAATATACCTGGCAGCTGTACAAC
ATGGAGACGAGACCGAAGAGCGACCCATCTTTCGAGGCCCTCGGCAACAT
GGACGAGCTCAACGCTTGCCTCGCCCTGGCGGCGGAGCATTCCGTCATCG
CCCAGAACGGTCTTTCGGAGATGCTCATGACCATCCAGTCTCTCATCATC
GACGCTTCCGCTCTCGTAGCTACCCCGCGCGATAGCTCCTCGGCACGCAA
GATCAGCCGCACCGGATTCCCCACGTGGTGCACGGACCAGCTCGAGGTGA
GAGGGATGGTTACAAGCATACGGCAGCGTCCTTGAGGGCTTGAGGGCGTG
GTGGTAGTTGTTCTCGACGCCTTGAGTGGTCGTGGTTTCCTTGTTTCCTG
ATCACTCCACAGGACAGCCACCACGTACGCACTCTGTGGAGCGATAGTTA
CCCTCTCTCCACGCCTCCTCCGGCACTCCTTGAACGTGCTAAAATGGGAA
TCCTCGCAGGCGTGCATCGACGAGTTGGACGCGAAAACGCCTCCTCTGAA
AACTTTCGTCGTTCCGGGGGGAGGGCTGGCGGCGTCTCACCTCCACGTGT
GTCGGTGCGTGTGCCGGCGGGCAGAGCGGAGTCTTCAGCCCTTGCTAGGC
ACGGGGCAGGGTGTTGAGGAAGTGGCCAGGTGAGACTGTCCCGCGTGTTT
CGAGTCCTCGCGCGTTTTTGCGACGAAGATTTGAAGTTTCGAGGAGAAAA
CTAAATTTGCTCAACAAGAGCACGAGAGGACGTGTGTTGTCGAGTGGTGC
CGTTTTGATATTGTACAGTATCATCTTATCGATTCATGTGGTTGATTGCT
CAGAGATGGCTCACTGCGTGCTCTGTTGAAACGTTCTTCCTCTGCAACGG
CGTCACCTATCATCTATCCTAGACTAACTTCCAGCCGTCGGGTTACGGTT
TTGGGATTCGTGTTCGTTTTGAGCTTCTTTGCTGGCCGAAGAATACAGTC
GTCTTGGTCAGTACGCCCTCCCCACAGATCTTTGCTGGGGATCGCGCATA
TTCTCGACCGATCTTGAGCCTTCAGTCACTCTCAACGGGTCTGAGGTCGC
CTGTTGTGCCTCATTGGGCCTCGTGACATGGTTCGGGTCGGTGGGGCGTT
TTTGACTCCAAGCCGGTGGACGTAATGCTATGTGACGTCATGACATTACA
AGACCCCCACGACACAGATCAAGAGGGCACACGGATTCAAATAATGGGCT
TTGCGAACAAGCTGACCAAGTTTCGCCGGGGGGGGTAGCTAGGGAGGATC
GCGACGCTAATTCCTATATCATCAAAAGCGGGGACGTTTGAGTTCCATCC
CCTCCTGGGTCTCCGGACGAGAACGCTCCCCATGTTGAATCAATAGAAAC
CCACCGGTAGCCGTTTCCTTCATGTTTCCAATATCCCCAAACTTGCGCCA
GGCCGAAAAATGTGACCTAGGTCAGGGAGGGGGGGGTGCATAGGGTCAAT
ATTCGAATCCGTCTGCCCTCTTGCCCATGCAGCCGAACTGAAAACACTAG
TAACAGCTTACGAGTACGCGACCGCGGTTGGGGTATCTCAGTCAGCGCTC
ATCCCCAACCCCCCCTACCCCAACTCTCCCCTCCTCCAACAGATACGTGA
ATCGGCTGAGCGATCTCCTCTTTGCGGCTGCGAGGTACGCCTCCATGGTT
GACGGAAAACCGGAGCGCCCCTGGAAGAAGCTTCCAGCAGTAGAGGACAC
TGAGGCAACCCCGGTCGAAAAGGCTTCATGAGTCTAAAAAAGTTCAGTTT
TGTGGCGGGGTGGTGTTGTTGAGTCATTGAATCCCACGGCCTCACCGACA
ATGCTTTCGCGAAATTCGGTTAATTTGATGCAGCTGTTGCAGCTGTGTGT
GTGGCGATATGGTTTGTGTTGCTTACGAGTAGTTCGAGAGAGGCTCGTTG
TCATGACGTTGATCGGCCGATTTACACGAGGTATGCGAAATGCATCCATG
TCACCGTGTCCGCGGTATGTCAATGACTTCCAGCTGTATCAATCGCGACA
GGCGGACAAACGTAACAAACGTTGCTTGACTTGAAAGGAAGGAATGCGTG
CGGTTGGTCGGTCGGGATGAAGGACCCAACGACTTGAGTCACTACTGGGT
CCTGGAGTCAAGCTTGCCGACCGTGTTTTGTTTTTGGAGCAGTGGGCAGG
TCGCACCTCCCGTCCCTATGTGCAAATACTTCATGACGTGCGCTACAGGA
ATATTCGGTCAGACGTTCGCGAGGGATTTTGAACATGTTACGGCCGAGGC
GGATGTATTTTCTGATTCCTGTTCTCTCTGAAGGTGAACGAGAGATTATA
TTGTTTTCAAGTAGCTGGACAACCCCGGGCTTATGATGTTTTAAAATAAC
TGGAAAGTCATGGCATCTCAAGTGTGTTTTACTTTGCATGTTCTCGTTAG
TCTTGGGAATGGCCGGCGTCGTGTTTCCGGCTATGGGGACAAAGCTGGGG
CATCACCGTAGCAAGGTTCATCACCTTGACAGGGGACATGACCCTCCGCA
CAGTTGGAGGTCGTTCGCGTCGTAACGGAGTGTTTACCACCGTCCGTCAT
TCGGTCAGGTGTTCGTACTTGTTTGTGTATGTGTATGTGTGTGTGTCCGG
AAGTCGGGAGCCTCGAGCTACGCCTCGCACGATCCACCTCAGGAGGTGTT
CCAACGGTGTTAAAGGCTTTCTTTAAAAGGAAAGATGGAAAGAGTGTTTC
TTTGCAAAACGATGCCGAGTTGACTGATTGTGTGAGCACTGTTTTGCGAT
TGGAGGCGACTGGTTGCAGTGCGTCTTGGCTCTCCCCATCGGCTGTTGGT
TCGCTGTTTTCTGTGTGTTATTGCATTTTTGGTTTTATTACTGAGTTCGT
CGATTGCTTTTCCTGGACGGGTTCGAAGTCACAGGCGTGTCGCAAGCGCA
CAAATGGAACAACATGGCCTCCTCATGCGGCTATCTTTGTTAGATTGATT
GATGTCTGTGAATTGTCCATCTTCAAGCAAAAGTTTTTTGCACACCATTT
TCACGGAAGTGCTCCGGCGTTCGGGGGGCATTGTCGTTTGAGCTTTTTTG
GCGCCCGGTTCGGTATTGCATGGGGATCCTGAAACCTCGACTCGATTCCT
CGTTGGTGACTTGCAGATTCTGCCGCACGAGACGATGAAGCGTGTCCATG
CGTACATGCATGCGTAAAGCACCCGACGGCCGCTACGTTGGGGTTTTCAA
ACTTGTCCATTTTGTGAGCCCTTTACTTGTATTTTTGTGAATGGTCGTGT
CTTTTACGTGGTTCTCGTGCCGTGTGCACCACCAAAATAATTTACCGACA
GAGGACAAATGATCATCCCGCACATGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1092:19894..27821+

>mRNA_H-canaliculatus_F_contig1092.859.1 ID=mRNA_H-canaliculatus_F_contig1092.859.1|Name=mRNA_H-canaliculatus_F_contig1092.859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1092:19894..27821+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCTACGCTTGCAAGTTGGCATCGTTCAGCAGTAGCATCATCGTGAG
GAGCGTTAGGCAAGCTCGGTACTCCTGGCCCAGGGGAAGCAAGTCGATCT
CAGGCAATTACTCAACGACAAACATGATGCGCTACGCTTGCAAGTTGGCA
TCGTTCAGCAGTAGCATCATCGTGAGGAGCGTTAGGCAAGCTCGGTACTC
CTGGCCCAGGGGAAGCAAGTCGATCTCAGGCAATTACTCAACGACAAACA
TGACGCAATCGCCTGGTAGCGGGAATGTAACCCTCACCACGGCAATAGTC
GGTGGCAGTGCGGGCCTGGGCTACATGGCGTATCGATTGATTTCGCAGGC
GCAATGCCGGGCGTCTTCATCAACGCCTGGTGACGAAGGGAGCAGGGGGG
GGGAGAGGTATCCGATGATTGATATGGCGGAAGTTGCTCGCAGGGCGGTA
CCGAGGAAGAAGTCTTTCCTGTACACCAGGACCGGAGATAAAGGGACATC
TCAGACGCAATCGCCTGGTAGCGGGAATGTAACCCTCACCACGGCAATAG
TCGGTGGCAGTGCGGGCCTGGGCTACATGGCGTATCGATTGATTTCGCAG
GCGCAATGCCGGGCGTCTTCATCAACGCCTGGTGACGAAGGGAGCAGGGG
GGGGGAGAGGTATCCGATGATTGATATGGCGGAAGTTGCTCGCAGGGCGG
TACCGAGGAAGAAGTCTTTCCTGTACACCAGGACCGGAGATAAAGGGACA
TCTCAGCTGTACAACATGGAGACGAGACCGAAGAGCGACCCATCTTTCGA
GGCCCTCGGCAACATGGACGAGCTCAACGCTTGCCTCGCCCTGGCGGCGG
AGCATTCCGTCATCGCCCAGAACGGTCTTTCGGAGATGCTCATGACCATC
CAGTCTCTCATCATCGACGCTTCCGCTCTCGTAGCTACCCCGCGCGATAG
CTCCTCGGCACGCAAGATCAGCCGCACCGGATTCCCCACGTGGTGCACGG
ACCAGCTCGAGCTGTACAACATGGAGACGAGACCGAAGAGCGACCCATCT
TTCGAGGCCCTCGGCAACATGGACGAGCTCAACGCTTGCCTCGCCCTGGC
GGCGGAGCATTCCGTCATCGCCCAGAACGGTCTTTCGGAGATGCTCATGA
CCATCCAGTCTCTCATCATCGACGCTTCCGCTCTCGTAGCTACCCCGCGC
GATAGCTCCTCGGCACGCAAGATCAGCCGCACCGGATTCCCCACGTGGTG
CACGGACCAGCTCGAGGCGTGCATCGACGAGTTGGACGCGAAAACGCCTC
CTCTGAAAACTTTCGTCGTTCCGGGGGGAGGGCTGGCGGCGTCTCACCTC
CACGTGTGTCGGTGCGTGTGCCGGCGGGCAGAGCGGAGTCTTCAGCCCTT
GCTAGGCACGGGGCAGGGTGTTGAGGAAGTGGCCAGGCGTGCATCGACGA
GTTGGACGCGAAAACGCCTCCTCTGAAAACTTTCGTCGTTCCGGGGGGAG
GGCTGGCGGCGTCTCACCTCCACGTGTGTCGGTGCGTGTGCCGGCGGGCA
GAGCGGAGTCTTCAGCCCTTGCTAGGCACGGGGCAGGGTGTTGAGGAAGT
GGCCAGATACGTGAATCGGCTGAGCGATCTCCTCTTTGCGGCTGCGAGGT
ACGCCTCCATGGTTGACGGAAAACCGGAGCGCCCCTGGAAGAAGCTTCCA
GCAGTAGAGGACACTGAGGCAACCCCGGTCGAAAAGGCTTCATGAATACG
TGAATCGGCTGAGCGATCTCCTCTTTGCGGCTGCGAGGTACGCCTCCATG
GTTGACGGAAAACCGGAGCGCCCCTGGAAGAAGCTTCCAGCAGTAGAGGA
CACTGAGGCAACCCCGGTCGAAAAGGCTTCATGA
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