mRNA_H-canaliculatus_F_contig10911.852.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10911.852.1
Unique NamemRNA_H-canaliculatus_F_contig10911.852.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10911.852.1 vs. uniprot
Match: D8LNX9_ECTSI (MFS_1_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.580e-5
Identity = 34/54 (62.96%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  865 PRAGAPRPPRGEVHVRRPWGRHGAAAPAGASSVD-GVVRRDGGDPRRGVEGAAT 1023
            PRAGAPRPPRGEV V RPWGRHGA A +GA   D G V      P  GV  AAT
Sbjct:  394 PRAGAPRPPRGEVRVWRPWGRHGAVAASGAGVSDSGNVVEGTAAPGGGVAAAAT 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10911.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNX9_ECTSI2.580e-562.96MFS_1_like domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10911contigH-canaliculatus_F_contig10911:73..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1058
Cds size1056
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928760.5979936-CDS-H-canaliculatus_F_contig10911:72..11281622928760.5979936-CDS-H-canaliculatus_F_contig10911:72..1128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10911 73..1128 +
1696845553.8289392-CDS-H-canaliculatus_F_contig10911:72..11281696845553.8289392-CDS-H-canaliculatus_F_contig10911:72..1128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10911 73..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10911.852.1prot_H-canaliculatus_F_contig10911.852.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10911 73..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10911.852.1

>prot_H-canaliculatus_F_contig10911.852.1 ID=prot_H-canaliculatus_F_contig10911.852.1|Name=mRNA_H-canaliculatus_F_contig10911.852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=352bp
AGAGPGISPPSATAARDESAKLPSDGATAVGDHLAAGSLAGGSGSSPGPR
TGVGARGHGLPTSPERARRGGAESRDRPVVPEGSSESQADRKWTGESAMR
EEKDEGVLSGASPVGVQAVEAKQNRLDLYFEGPTAASGGGGGGAAAAAAP
PAAGWAVQDTVGVRESVEKVEKEEEEEEDAAATSAGSCGTAASITTVSPG
ESPAVEEDAHTLSRPSREGPGFTSDTAGVGGAADVGGGAGTRGPNSAPDT
PPLPSVDAATTMATTETAPNGSGTGTRTRAGLNDNANLPRAGAPRPPRGE
VHVRRPWGRHGAAAPAGASSVDGVVRRDGGDPRRGVEGAATPPGSATPAS
YP
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mRNA from alignment at H-canaliculatus_F_contig10911:73..1129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10911.852.1 ID=mRNA_H-canaliculatus_F_contig10911.852.1|Name=mRNA_H-canaliculatus_F_contig10911.852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10911:73..1129+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGGCGGGGCCGGGAATCTCTCCCCCGTCGGCGACCGCCGCACGAGA
CGAATCAGCTAAGCTTCCCTCCGACGGGGCCACGGCTGTTGGTGACCACC
TCGCAGCGGGAAGCCTCGCAGGAGGTAGCGGCTCAAGCCCGGGGCCGAGG
ACGGGTGTAGGAGCCCGGGGGCACGGGTTGCCGACGTCCCCGGAAAGGGC
AAGACGTGGAGGCGCGGAAAGCCGAGACCGTCCCGTAGTCCCAGAGGGCA
GTTCAGAATCACAGGCCGATAGGAAATGGACGGGCGAGTCTGCAATGCGC
GAGGAGAAGGACGAGGGTGTTCTGTCGGGGGCATCGCCGGTGGGAGTCCA
GGCGGTGGAGGCCAAACAGAACCGGTTGGATCTGTATTTTGAAGGGCCGA
CAGCGGCGAGCGGTGGTGGTGGTGGTGGTGCCGCCGCCGCCGCCGCTCCT
CCTGCTGCTGGGTGGGCGGTGCAAGACACGGTGGGTGTCAGGGAGAGCGT
GGAGAAGGTGGAGAAGGAGGAGGAGGAGGAGGAGGACGCCGCCGCCACGA
GCGCAGGCTCTTGTGGCACGGCCGCGTCCATCACCACAGTTTCGCCGGGT
GAATCCCCGGCCGTGGAAGAGGACGCGCATACCCTTTCGAGGCCTTCCAG
GGAAGGACCAGGATTCACCAGCGATACCGCCGGCGTTGGCGGTGCCGCCG
ACGTTGGTGGCGGCGCTGGCACCCGGGGGCCAAACAGCGCGCCCGATACC
CCGCCCCTCCCTTCAGTGGACGCCGCCACCACCATGGCGACGACCGAGAC
GGCCCCGAACGGAAGCGGGACCGGAACCAGAACCCGCGCAGGCTTGAACG
ACAACGCCAACCTGCCTCGTGCGGGGGCTCCGCGTCCGCCCAGAGGGGAG
GTTCACGTGCGGCGGCCCTGGGGACGGCACGGGGCGGCGGCGCCCGCGGG
TGCCTCGTCGGTGGACGGGGTCGTTCGCAGAGATGGCGGGGACCCGCGGC
GCGGGGTTGAAGGAGCAGCGACCCCGCCCGGATCGGCGACGCCAGCGAGC
TACCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10911:73..1129+

>mRNA_H-canaliculatus_F_contig10911.852.1 ID=mRNA_H-canaliculatus_F_contig10911.852.1|Name=mRNA_H-canaliculatus_F_contig10911.852.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2112bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10911:73..1129+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGGCGGGGCCGGGAATCTCTCCCCCGTCGGCGACCGCCGCACGAGA
CGAATCAGCTAAGCTTCCCTCCGACGGGGCCACGGCTGTTGGTGACCACC
TCGCAGCGGGAAGCCTCGCAGGAGGTAGCGGCTCAAGCCCGGGGCCGAGG
ACGGGTGTAGGAGCCCGGGGGCACGGGTTGCCGACGTCCCCGGAAAGGGC
AAGACGTGGAGGCGCGGAAAGCCGAGACCGTCCCGTAGTCCCAGAGGGCA
GTTCAGAATCACAGGCCGATAGGAAATGGACGGGCGAGTCTGCAATGCGC
GAGGAGAAGGACGAGGGTGTTCTGTCGGGGGCATCGCCGGTGGGAGTCCA
GGCGGTGGAGGCCAAACAGAACCGGTTGGATCTGTATTTTGAAGGGCCGA
CAGCGGCGAGCGGTGGTGGTGGTGGTGGTGCCGCCGCCGCCGCCGCTCCT
CCTGCTGCTGGGTGGGCGGTGCAAGACACGGTGGGTGTCAGGGAGAGCGT
GGAGAAGGTGGAGAAGGAGGAGGAGGAGGAGGAGGACGCCGCCGCCACGA
GCGCAGGCTCTTGTGGCACGGCCGCGTCCATCACCACAGTTTCGCCGGGT
GAATCCCCGGCCGTGGAAGAGGACGCGCATACCCTTTCGAGGCCTTCCAG
GGAAGGACCAGGATTCACCAGCGATACCGCCGGCGTTGGCGGTGCCGCCG
ACGTTGGTGGCGGCGCTGGCACCCGGGGGCCAAACAGCGCGCCCGATACC
CCGCCCCTCCCTTCAGTGGACGCCGCCACCACCATGGCGACGACCGAGAC
GGCCCCGAACGGAAGCGGGACCGGAACCAGAACCCGCGCAGGCTTGAACG
ACAACGCCAACCTGCCTCGTGCGGGGGCTCCGCGTCCGCCCAGAGGGGAG
GTTCACGTGCGGCGGCCCTGGGGACGGCACGGGGCGGCGGCGCCCGCGGG
TGCCTCGTCGGTGGACGGGGTCGTTCGCAGAGATGGCGGGGACCCGCGGC
GCGGGGTTGAAGGAGCAGCGACCCCGCCCGGATCGGCGACGCCAGCGAGC
TACCCTGCGGGGGCGGGGCCGGGAATCTCTCCCCCGTCGGCGACCGCCGC
ACGAGACGAATCAGCTAAGCTTCCCTCCGACGGGGCCACGGCTGTTGGTG
ACCACCTCGCAGCGGGAAGCCTCGCAGGAGGTAGCGGCTCAAGCCCGGGG
CCGAGGACGGGTGTAGGAGCCCGGGGGCACGGGTTGCCGACGTCCCCGGA
AAGGGCAAGACGTGGAGGCGCGGAAAGCCGAGACCGTCCCGTAGTCCCAG
AGGGCAGTTCAGAATCACAGGCCGATAGGAAATGGACGGGCGAGTCTGCA
ATGCGCGAGGAGAAGGACGAGGGTGTTCTGTCGGGGGCATCGCCGGTGGG
AGTCCAGGCGGTGGAGGCCAAACAGAACCGGTTGGATCTGTATTTTGAAG
GGCCGACAGCGGCGAGCGGTGGTGGTGGTGGTGGTGCCGCCGCCGCCGCC
GCTCCTCCTGCTGCTGGGTGGGCGGTGCAAGACACGGTGGGTGTCAGGGA
GAGCGTGGAGAAGGTGGAGAAGGAGGAGGAGGAGGAGGAGGACGCCGCCG
CCACGAGCGCAGGCTCTTGTGGCACGGCCGCGTCCATCACCACAGTTTCG
CCGGGTGAATCCCCGGCCGTGGAAGAGGACGCGCATACCCTTTCGAGGCC
TTCCAGGGAAGGACCAGGATTCACCAGCGATACCGCCGGCGTTGGCGGTG
CCGCCGACGTTGGTGGCGGCGCTGGCACCCGGGGGCCAAACAGCGCGCCC
GATACCCCGCCCCTCCCTTCAGTGGACGCCGCCACCACCATGGCGACGAC
CGAGACGGCCCCGAACGGAAGCGGGACCGGAACCAGAACCCGCGCAGGCT
TGAACGACAACGCCAACCTGCCTCGTGCGGGGGCTCCGCGTCCGCCCAGA
GGGGAGGTTCACGTGCGGCGGCCCTGGGGACGGCACGGGGCGGCGGCGCC
CGCGGGTGCCTCGTCGGTGGACGGGGTCGTTCGCAGAGATGGCGGGGACC
CGCGGCGCGGGGTTGAAGGAGCAGCGACCCCGCCCGGATCGGCGACGCCA
GCGAGCTACCCT
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