mRNA_H-canaliculatus_F_contig10905.845.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10905.845.1
Unique NamemRNA_H-canaliculatus_F_contig10905.845.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10905.845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10905contigH-canaliculatus_F_contig10905:3759..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size525
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.294317-CDS-H-canaliculatus_F_contig10905:3758..42441622928759.294317-CDS-H-canaliculatus_F_contig10905:3758..4244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10905 3759..4244 +
1696845553.2063723-CDS-H-canaliculatus_F_contig10905:3758..42441696845553.2063723-CDS-H-canaliculatus_F_contig10905:3758..4244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10905 3759..4244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.316879-UTR-H-canaliculatus_F_contig10905:4244..42821622928759.316879-UTR-H-canaliculatus_F_contig10905:4244..4282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10905 4245..4282 +
1696845553.2171764-UTR-H-canaliculatus_F_contig10905:4244..42821696845553.2171764-UTR-H-canaliculatus_F_contig10905:4244..4282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10905 4245..4282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10905.845.1prot_H-canaliculatus_F_contig10905.845.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10905 3759..4244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10905.845.1

>prot_H-canaliculatus_F_contig10905.845.1 ID=prot_H-canaliculatus_F_contig10905.845.1|Name=mRNA_H-canaliculatus_F_contig10905.845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
DEWQVRNGRRLCLSSSSSSSSSLFFFVVVVAVILVLFLPSRPPVLLLLLS
LRWLSVAGAVVVDDGGDAISLASHVDLSRGGHFGGRFVRSIAAARSAPWL
RTPRRRLLEWAEPLLSPCSVSPRIHRPRRRGRTRLHAFPDGPRPYLIVQK
HPRRQPPAERG*
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mRNA from alignment at H-canaliculatus_F_contig10905:3759..4282+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10905.845.1 ID=mRNA_H-canaliculatus_F_contig10905.845.1|Name=mRNA_H-canaliculatus_F_contig10905.845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10905:3759..4282+ (Hapterophycus canaliculatus Oshoro5f female)
GATGAGTGGCAGGTGAGGAACGGGCGTAGGCTGTGTTTGTCGTCGTCGTC
GTCGTCGTCGTCGTCGTTGTTTTTCTTTGTGGTAGTGGTGGCGGTGATCT
TGGTGTTGTTCTTGCCGTCCCGGCCGCCCGTGCTGCTGCTTCTGCTCTCG
TTACGGTGGTTGTCCGTCGCGGGGGCCGTTGTCGTTGATGATGGTGGCGA
TGCCATTTCCCTTGCGAGCCATGTCGACCTGTCTCGAGGAGGACATTTCG
GCGGTCGCTTTGTGCGCTCGATAGCGGCGGCGAGGTCGGCGCCGTGGTTG
AGAACTCCTCGACGAAGGCTTCTGGAGTGGGCGGAGCCGCTCCTTTCCCC
GTGCAGTGTGTCCCCGCGAATCCACCGCCCACGACGACGAGGACGAACTC
GTCTTCACGCCTTCCCCGACGGTCCACGTCCATACCTTATCGTTCAAAAG
CACCCGCGCCGACAACCACCGGCAGAACGCGGATGAAGCCGGCAGCAGCA
ATACGAGGATTCTCTTGTGATGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10905:3759..4282+

>mRNA_H-canaliculatus_F_contig10905.845.1 ID=mRNA_H-canaliculatus_F_contig10905.845.1|Name=mRNA_H-canaliculatus_F_contig10905.845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10905:3759..4282+ (Hapterophycus canaliculatus Oshoro5f female)
GATGAGTGGCAGGTGAGGAACGGGCGTAGGCTGTGTTTGTCGTCGTCGTC
GTCGTCGTCGTCGTCGTTGTTTTTCTTTGTGGTAGTGGTGGCGGTGATCT
TGGTGTTGTTCTTGCCGTCCCGGCCGCCCGTGCTGCTGCTTCTGCTCTCG
TTACGGTGGTTGTCCGTCGCGGGGGCCGTTGTCGTTGATGATGGTGGCGA
TGCCATTTCCCTTGCGAGCCATGTCGACCTGTCTCGAGGAGGACATTTCG
GCGGTCGCTTTGTGCGCTCGATAGCGGCGGCGAGGTCGGCGCCGTGGTTG
AGAACTCCTCGACGAAGGCTTCTGGAGTGGGCGGAGCCGCTCCTTTCCCC
GTGCAGTGTGTCCCCGCGAATCCACCGCCCACGACGACGAGGACGAACTC
GTCTTCACGCCTTCCCCGACGGTCCACGTCCATACCTTATCGTTCAAAAG
CACCCGCGCCGACAACCACCGGCAGAACGCGGATGAGATGAGTGGCAGGT
GAGGAACGGGCGTAGGCTGTGTTTGTCGTCGTCGTCGTCGTCGTCGTCGT
CGTTGTTTTTCTTTGTGGTAGTGGTGGCGGTGATCTTGGTGTTGTTCTTG
CCGTCCCGGCCGCCCGTGCTGCTGCTTCTGCTCTCGTTACGGTGGTTGTC
CGTCGCGGGGGCCGTTGTCGTTGATGATGGTGGCGATGCCATTTCCCTTG
CGAGCCATGTCGACCTGTCTCGAGGAGGACATTTCGGCGGTCGCTTTGTG
CGCTCGATAGCGGCGGCGAGGTCGGCGCCGTGGTTGAGAACTCCTCGACG
AAGGCTTCTGGAGTGGGCGGAGCCGCTCCTTTCCCCGTGCAGTGTGTCCC
CGCGAATCCACCGCCCACGACGACGAGGACGAACTCGTCTTCACGCCTTC
CCCGACGGTCCACGTCCATACCTTATCGTTCAAAAGCACCCGCGCCGACA
ACCACCGGCAGAACGCGGATGA
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