mRNA_H-canaliculatus_F_contig1090.837.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1090.837.1
Unique NamemRNA_H-canaliculatus_F_contig1090.837.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1090.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1090contigH-canaliculatus_F_contig1090:579..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size412
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928758.3826797-UTR-H-canaliculatus_F_contig1090:578..6541622928758.3826797-UTR-H-canaliculatus_F_contig1090:578..654Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1090 579..654 +
1696845552.865201-UTR-H-canaliculatus_F_contig1090:578..6541696845552.865201-UTR-H-canaliculatus_F_contig1090:578..654Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1090 579..654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928758.3955646-CDS-H-canaliculatus_F_contig1090:654..9901622928758.3955646-CDS-H-canaliculatus_F_contig1090:654..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1090 655..990 +
1696845552.8733983-CDS-H-canaliculatus_F_contig1090:654..9901696845552.8733983-CDS-H-canaliculatus_F_contig1090:654..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1090 655..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1090.837.1prot_H-canaliculatus_F_contig1090.837.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1090 655..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1090.837.1

>prot_H-canaliculatus_F_contig1090.837.1 ID=prot_H-canaliculatus_F_contig1090.837.1|Name=mRNA_H-canaliculatus_F_contig1090.837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MPSASLEQERRKLLCGRFLFRRRMAFRLAPPRFVTTPPAPTNERGRTTYE
CMFGIMRNLGTRSGPQGSGTGTLTRQQTPAFPDIVNGAQEDCTAHLYWHA
AAKASPEGLTCC
back to top

mRNA from alignment at H-canaliculatus_F_contig1090:579..990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1090.837.1 ID=mRNA_H-canaliculatus_F_contig1090.837.1|Name=mRNA_H-canaliculatus_F_contig1090.837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1090:579..990+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGGCATGCCGTGCGCGAGGAACCAACAACTTGGGCTGAATATACGACC
GAACAAGGAAATGCAGGCCAGCTGAGATGCCGAGCGCTTCGCTAGAGCAA
GAACGTCGCAAACTACTGTGCGGCCGGTTTTTATTTCGACGTAGGATGGC
GTTTCGCCTTGCTCCCCCACGTTTCGTCACTACGCCCCCGGCTCCCACAA
ACGAACGAGGTCGGACGACATATGAATGCATGTTCGGAATAATGAGGAAT
TTAGGCACGCGGAGTGGTCCCCAAGGAAGTGGGACCGGTACATTAACTCG
ACAACAAACTCCCGCTTTTCCAGACATTGTCAATGGAGCTCAGGAAGACT
GTACAGCACATTTGTACTGGCATGCAGCGGCGAAAGCATCGCCGGAAGGA
CTCACTTGTTGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1090:579..990+

>mRNA_H-canaliculatus_F_contig1090.837.1 ID=mRNA_H-canaliculatus_F_contig1090.837.1|Name=mRNA_H-canaliculatus_F_contig1090.837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1090:579..990+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGAGCGCTTCGCTAGAGCAAGAACGTCGCAAACTACTGTGCGGCCG
GTTTTTATTTCGACGTAGGATGGCGTTTCGCCTTGCTCCCCCACGTTTCG
TCACTACGCCCCCGGCTCCCACAAACGAACGAGGTCGGACGACATATGAA
TGCATGTTCGGAATAATGAGGAATTTAGGCACGCGGAGTGGTCCCCAAGG
AAGTGGGACCGGTACATTAACTCGACAACAAACTCCCGCTTTTCCAGACA
TTGTCAATGGAGCTCAGGAAGACTGTACAGCACATTTGTACTGGCATGCA
GCGGCGAAAGCATCGCCGGAAGGACTCACTTGTTGCATGCCGAGCGCTTC
GCTAGAGCAAGAACGTCGCAAACTACTGTGCGGCCGGTTTTTATTTCGAC
GTAGGATGGCGTTTCGCCTTGCTCCCCCACGTTTCGTCACTACGCCCCCG
GCTCCCACAAACGAACGAGGTCGGACGACATATGAATGCATGTTCGGAAT
AATGAGGAATTTAGGCACGCGGAGTGGTCCCCAAGGAAGTGGGACCGGTA
CATTAACTCGACAACAAACTCCCGCTTTTCCAGACATTGTCAATGGAGCT
CAGGAAGACTGTACAGCACATTTGTACTGGCATGCAGCGGCGAAAGCATC
GCCGGAAGGACTCACTTGTTGC
back to top