mRNA_H-canaliculatus_F_contig10892.832.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10892.832.1
Unique NamemRNA_H-canaliculatus_F_contig10892.832.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.660e-51
Identity = 91/115 (79.13%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKR------EDAQAGQYRLWKRRLAFERTNPE 339
            +VYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPK+MAAKAVYKERKP+WDGI+PNLLARPPRG+                  E+AQAGQYRLWKRRLAFERTNPE
Sbjct:  217 KVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKHMAAKAVYKERKPIWDGIDPNLLARPPRGHXXXXXXXXXXXXXXXXXXEEAQAGQYRLWKRRLAFERTNPE 331          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A8J4URT1_9MYCE (Suf domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4URT1_9MYCE)

HSP 1 Score: 74.7 bits (182), Expect = 2.660e-13
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y+R V  P+  L+ +W+E ++FE + N+VL K+  + E+  KY  A+ VY++RK + +GI  N+LA+PPR               D +  Q RLW++ +A+ERTNP+
Sbjct:  297 KLYQRAVENPMHELDAIWKEYDQFENSINKVLAKSLLT-EHYNKYQQARNVYRDRKALLEGILRNMLAKPPR-------------TSDKEEHQVRLWRKLIAYERTNPQ 391          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A6B2L3Q3_9EUKA (Suf domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3Q3_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 4.050e-13
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y+R V  P+  LE +W E   FE   N++L K   + E  PKYM A+  Y+ERK   +GI  NLLARPPR N                  Q +LWK+ +A+E+ NP+
Sbjct:   62 KLYQRAVVNPMHNLENIWNEYNTFENGLNKILAKALLT-ENGPKYMQARTTYRERKNYLEGIQRNLLARPPRNNVKD-------------LSQVKLWKKLIAYEKRNPQ 156          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A6B2KZI8_9EUKA (Suf domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZI8_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 4.800e-13
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y+R V  P+  LE +W E   FE   N++L K   + E  PKYM A+  Y+ERK   +GI  NLLARPPR N                  Q +LWK+ +A+E+ NP+
Sbjct:  145 KLYQRAVVNPMHNLENIWNEYNTFENGLNKILAKALLT-ENGPKYMQARTTYRERKNYLEGIQRNLLARPPRNNVKD-------------LSQVKLWKKLIAYEKRNPQ 239          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A4Y7IN49_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IN49_PAPSO)

HSP 1 Score: 73.9 bits (180), Expect = 4.850e-13
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTN 333
            +VY++ +  P   +E +W++ E+FE + +  L K + S EY PK+ +AKAVY+ERK + DGI+ N+LA PP G+             D +  Q+  WKR LAFE+ N
Sbjct:  161 KVYQKAIVTPTHQVEQIWKDYEKFENSVSRALAKDQVS-EYQPKHNSAKAVYRERKKLVDGIDWNMLAVPPTGS-------------DKEEQQHMAWKRFLAFEKAN 253          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A151Z4S8_9MYCE (Cleavage stimulation factor subunit 3 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z4S8_9MYCE)

HSP 1 Score: 73.9 bits (180), Expect = 4.930e-13
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 THPTQVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            T+  ++Y+R V  P+  L+ +W+E ++FE + N+VL K+    E+  KY  AK+VY+ERK + +GI  N+LA+PP G+S            D +  Q RLW++ LA+E++NP+
Sbjct:  267 TNLRKLYQRAVENPMHDLDIIWKEYDQFENSINKVLAKSLLQ-EHHQKYQHAKSVYRERKSLLEGILRNMLAKPP-GSS------------DKEEHQVRLWRKLLAYEKSNPQ 365          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A2P6NR16_9EUKA (Suf domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NR16_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 4.260e-12
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y+R + +P+  LE +W++ + FE   N+ L K   ++   PK+M AKA+Y+E+K  ++GI+ N+L RPP   SA  G       ED Q     LWK  +A+E+TNP+
Sbjct:  225 RIYQRAIEVPMHKLEDIWKQYDAFENGLNKTLAKQPLTV-CQPKFMNAKAIYREKKRYYEGIHRNMLPRPP---SAIKG-------EDNQPS---LWKGLVAYEKTNPQ 319          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A3M6V9U8_9STRA (Suf domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9U8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.430e-10
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMA--GNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y R+V +PL+G+E +WR+ E+FE A   NE L +  F + + PK+ AA+AV K+RK ++D +N N LA P    + SS          A A     W++ LA E  NPE
Sbjct:  209 KLYHRMVMVPLNGMETIWRDYEKFERAIPNNEALAQNFFKV-FRPKFDAARAVLKDRKKLYDQVNINALAVP----ATSS---------RADAADMANWQKILALEMGNPE 305          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: A0A3R7J866_9STRA (Suf domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J866_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.940e-10
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMA--GNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y R+V +PL+G+E +WR+ E+FE A   NE L +  F + + PK+ A++AV ++RK ++D +N N LA P   + A     D+             W++ LA E  NPE
Sbjct:  185 KLYHRMVMVPLNGMETIWRDYEKFERAIPNNEALAQNFFKV-FRPKFDASRAVLRDRKKLYDQVNTNELAVPATSSRADKADMDN-------------WQKILALEMGNPE 281          
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Match: H3GFY5_PHYRM (Suf domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=H3GFY5_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 8.430e-10
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   13 QVYRRVVALPLDGLEPLWRECEEFEMA--GNEVLWKTKFSLEYLPKYMAAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRLWKRRLAFERTNPE 339
            ++Y R+V +PL+G+E +WR+ E+FE A   N+ L +  F + + PK+ AA+AV ++RK ++D +N N LA P    + SS          A A     W++ LA E  NPE
Sbjct:  209 KLYHRMVMVPLNGMETIWRDYEKFERAIPNNDALAQNFFKV-FRPKFDAARAVLRDRKKLYDQVNTNALAVP----ATSS---------RADAADMANWQKILALEMGNPE 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10892.832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI3.660e-5179.13Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8J4URT1_9MYCE2.660e-1336.70Suf domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A6B2L3Q3_9EUKA4.050e-1338.53Suf domain-containing protein n=1 Tax=Arcella inte... [more]
A0A6B2KZI8_9EUKA4.800e-1338.53Suf domain-containing protein n=2 Tax=Arcella inte... [more]
A0A4Y7IN49_PAPSO4.850e-1339.25Suf domain-containing protein n=3 Tax=Papaver somn... [more]
A0A151Z4S8_9MYCE4.930e-1338.05Cleavage stimulation factor subunit 3 n=1 Tax=Tieg... [more]
A0A2P6NR16_9EUKA4.260e-1237.61Suf domain-containing protein n=1 Tax=Planoprotost... [more]
A0A3M6V9U8_9STRA2.430e-1038.74Suf domain-containing protein n=2 Tax=Peronospora ... [more]
A0A3R7J866_9STRA5.940e-1035.14Suf domain-containing protein n=3 Tax=Phytophthora... [more]
H3GFY5_PHYRM8.430e-1036.94Suf domain-containing protein n=34 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10892contigH-canaliculatus_F_contig10892:149..838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog2880.D8LMJ6
KEGG koko:K14408
KEGG Pathwayko03015,map03015
EggNOG free text desc.mRNA processing
EggNOG OGsCOG0696@1,KOG1914@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.6405396-CDS-H-canaliculatus_F_contig10892:148..3441622928757.6405396-CDS-H-canaliculatus_F_contig10892:148..344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10892 149..344 -
1696845552.5695424-CDS-H-canaliculatus_F_contig10892:148..3441696845552.5695424-CDS-H-canaliculatus_F_contig10892:148..344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10892 149..344 -
1622928757.6704307-CDS-H-canaliculatus_F_contig10892:695..8381622928757.6704307-CDS-H-canaliculatus_F_contig10892:695..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10892 696..838 -
1696845552.5795138-CDS-H-canaliculatus_F_contig10892:695..8381696845552.5795138-CDS-H-canaliculatus_F_contig10892:695..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10892 696..838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10892.832.1prot_H-canaliculatus_F_contig10892.832.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10892 149..838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10892.832.1

>prot_H-canaliculatus_F_contig10892.832.1 ID=prot_H-canaliculatus_F_contig10892.832.1|Name=mRNA_H-canaliculatus_F_contig10892.832.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
THPTQVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKYM
AAKAVYKERKPVWDGINPNLLARPPRGNSASSGGRDSKKREDAQAGQYRL
WKRRLAFERTNPE
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mRNA from alignment at H-canaliculatus_F_contig10892:149..838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10892.832.1 ID=mRNA_H-canaliculatus_F_contig10892.832.1|Name=mRNA_H-canaliculatus_F_contig10892.832.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10892:149..838- (Hapterophycus canaliculatus Oshoro5f female)
ACCCACCCAACGCAGGTGTACCGACGAGTGGTCGCGCTCCCTCTCGACGG GCTTGAACCCCTCTGGCGAGAGTGCGAAGAGTTCGAGATGGCCGGGAACG AAGTGCTTTGGAAAACCAAGTTCAGCCTCGAGTACCTTCCCAAGTAAGCC TTGGCCACGTCGGGCCAGGCCGCCTATCGGCTATGTTCTCGTGCCGCGAT GCACCCGGTCACGTGTGCCCGTGTCATCTTGCGCCTCTTGATGTGCGAGG GTCGATTCGCCTCATCTGTATCGCTCGTCCGTGAACGTGTGCATGCACCC TTGTGTCAGGCAGTTGCGCGGCGGGCAAACACAGTTCATGACTTGAAGAG TCATGCAAGTGCGGGCAATGCAGCACATAGCCGGCTGGCTGCCGCGTGTC GGCGGATGGATCAAGCCAATGAGCTCCTGTTACTAATGCTGTATCTGTGC CGTGGGGTCCCTGCCGTGCTCCGGTTGATCGATCGCCGGTTCAGGTACAT GGCGGCGAAAGCAGTCTACAAGGAGAGGAAGCCAGTGTGGGACGGCATCA ACCCAAACCTTCTTGCCAGGCCTCCTCGCGGAAATAGCGCCAGCAGCGGC GGAAGAGACAGTAAAAAGAGAGAAGACGCGCAGGCTGGCCAGTACCGGCT GTGGAAGAGGAGGCTGGCCTTCGAGAGGACCAATCCAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10892:149..838-

>mRNA_H-canaliculatus_F_contig10892.832.1 ID=mRNA_H-canaliculatus_F_contig10892.832.1|Name=mRNA_H-canaliculatus_F_contig10892.832.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10892:149..838- (Hapterophycus canaliculatus Oshoro5f female)
ACCCACCCAACGCAGGTGTACCGACGAGTGGTCGCGCTCCCTCTCGACGG
GCTTGAACCCCTCTGGCGAGAGTGCGAAGAGTTCGAGATGGCCGGGAACG
AAGTGCTTTGGAAAACCAAGTTCAGCCTCGAGTACCTTCCCAAACCCACC
CAACGCAGGTGTACCGACGAGTGGTCGCGCTCCCTCTCGACGGGCTTGAA
CCCCTCTGGCGAGAGTGCGAAGAGTTCGAGATGGCCGGGAACGAAGTGCT
TTGGAAAACCAAGTTCAGCCTCGAGTACCTTCCCAAGTACATGGCGGCGA
AAGCAGTCTACAAGGAGAGGAAGCCAGTGTGGGACGGCATCAACCCAAAC
CTTCTTGCCAGGCCTCCTCGCGGAAATAGCGCCAGCAGCGGCGGAAGAGA
CAGTAAAAAGAGAGAAGACGCGCAGGCTGGCCAGTACCGGCTGTGGAAGA
GGAGGCTGGCCTTCGAGAGGACCAATCCAGAGGTACATGGCGGCGAAAGC
AGTCTACAAGGAGAGGAAGCCAGTGTGGGACGGCATCAACCCAAACCTTC
TTGCCAGGCCTCCTCGCGGAAATAGCGCCAGCAGCGGCGGAAGAGACAGT
AAAAAGAGAGAAGACGCGCAGGCTGGCCAGTACCGGCTGTGGAAGAGGAG
GCTGGCCTTCGAGAGGACCAATCCAGAG
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