mRNA_H-canaliculatus_F_contig10867.812.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10867.812.1
Unique NamemRNA_H-canaliculatus_F_contig10867.812.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10867.812.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.200e-114
Identity = 322/688 (46.80%), Postives = 362/688 (52.62%), Query Frame = 1 
Query:    1 MEPFDAELFVDRLVEDDEPLPW-RSEMSGADGGRPHHIWEAATHHTGSGSSAVHGGAKLFLQPVYSWPDQRQPXXXXXXXXXXXXXQPRPMCGDGVQHEPSQDMPIVIP---MFDTLFTPCRAMRPEQR----------LAVTSD---------FGFGSAGEARSGSNVFEFGP--VYNIPPPPE---TFAPPLQVPMAPLRQPSGGRLGGGLYPPGSGEMTL---RRPAG--------------EQHHDS---EFKYVANSDLVRGAASALPLTLTGADAHSSREYDDERYAFLRRQEAALFVGAGYLSTGAGRASGAEEAGISPAERASAVDWLSKLHSAAPAASGGARAVXXXXXXXXXXXXXXXXAGPRPTLKLAAAACLALSSKYQDTQAVSLWGVAAAAASVPGTFSASSATSVQNGATRGGDSGGPGVGSNGSSSNRNISGCDGGGDFFRVLGLGXXXXXXXXXXXXXXXXXXXNIDVGAARKKLVTMETQVASALGFRLTVPTPLSFLGVFLRRAETLGYLLQXXXXXXXXXXXXXERVREEAQQILLCMLREACSLEHSPSSLAACALYWASCVTSPGAAPPSSFAFLAVTGYELEQLCRCLRDMEGVRTGGGVGGGRH-GSGSFYASFSLLGXXXXXXXXXXXXXXXXXXDWAGAAFPEHAGNSLFGAGGGHPAIAAL 1917
            MEPFDAE FVDRLVED  P  W R  + G  GGR   +WE                AKLF QPV+++ D+ QP         XXXX              SQDMP+++P   + D +FTPCRA+ P             +AVT           FG G   E      +  F P  +YNIPP      ++A  LQVPMAPLRQPSGGR      PP    M     R PA               E++ ++   EF                   LTGADAHSSREYDDER+AFLRRQEAAL  GA Y++ G           + PA R++AVDWLS+LH A      G   V                    P +KLA AACL L+SKYQD                                                             DFF VLG G     XXXXXXXXXXXXXXN DV AARK+L   E QVASALGFRLTVPT LSFLGVFLRRAE LGY+L              ERVR EA+QILLCMLRE+CSLEH PS+LAA ALYWASCVT+PGAAPP+SFAFLAVTGYELEQLC CLRDME VRTGGG    R+ G+GSF +  S   XXXXXXXXXXXX      DWAGAAFPEHA NSLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGG-GGR---VWEXXXXXXXXXXXXXXXAAKLF-QPVFNF-DEHQPYLVGDGGGYXXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSGGRFGAGKKNE------IAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERSPAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXXXXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGVV---------VDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLG----------------PAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGR--------ERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGR---RYDGAGSFASCSSPAAXXXXXXXXXXXX------DWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10867.812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI1.200e-11446.80Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10867contigH-canaliculatus_F_contig10867:525..2519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin, C-terminal domain
Ec32 orthologEc-06_003040.1
Exons2
Model size1920
Cds size1920
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928754.9487343-CDS-H-canaliculatus_F_contig10867:524..15441622928754.9487343-CDS-H-canaliculatus_F_contig10867:524..1544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10867 525..1544 -
1696845551.6871078-CDS-H-canaliculatus_F_contig10867:524..15441696845551.6871078-CDS-H-canaliculatus_F_contig10867:524..1544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10867 525..1544 -
1622928754.9668531-CDS-H-canaliculatus_F_contig10867:1619..25191622928754.9668531-CDS-H-canaliculatus_F_contig10867:1619..2519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10867 1620..2519 -
1696845551.6953037-CDS-H-canaliculatus_F_contig10867:1619..25191696845551.6953037-CDS-H-canaliculatus_F_contig10867:1619..2519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10867 1620..2519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10867.812.1prot_H-canaliculatus_F_contig10867.812.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10867 525..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10867.812.1

>prot_H-canaliculatus_F_contig10867.812.1 ID=prot_H-canaliculatus_F_contig10867.812.1|Name=mRNA_H-canaliculatus_F_contig10867.812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=640bp
MEPFDAELFVDRLVEDDEPLPWRSEMSGADGGRPHHIWEAATHHTGSGSS
AVHGGAKLFLQPVYSWPDQRQPPPQQQQQQQQQEQQPRPMCGDGVQHEPS
QDMPIVIPMFDTLFTPCRAMRPEQRLAVTSDFGFGSAGEARSGSNVFEFG
PVYNIPPPPETFAPPLQVPMAPLRQPSGGRLGGGLYPPGSGEMTLRRPAG
EQHHDSEFKYVANSDLVRGAASALPLTLTGADAHSSREYDDERYAFLRRQ
EAALFVGAGYLSTGAGRASGAEEAGISPAERASAVDWLSKLHSAAPAASG
GARAVCGGGGGGLRGGGGGGGAGPRPTLKLAAAACLALSSKYQDTQAVSL
WGVAAAAASVPGTFSASSATSVQNGATRGGDSGGPGVGSNGSSSNRNISG
CDGGGDFFRVLGLGGGGGGENSSSSCGGGGDDDNIDVGAARKKLVTMETQ
VASALGFRLTVPTPLSFLGVFLRRAETLGYLLQQQQAAGGGAGSAAERVR
EEAQQILLCMLREACSLEHSPSSLAACALYWASCVTSPGAAPPSSFAFLA
VTGYELEQLCRCLRDMEGVRTGGGVGGGRHGSGSFYASFSLLGGGGGGGG
GGGIGGGGGGGDWAGAAFPEHAGNSLFGAGGGHPAIAAL*
back to top

mRNA from alignment at H-canaliculatus_F_contig10867:525..2519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10867.812.1 ID=mRNA_H-canaliculatus_F_contig10867.812.1|Name=mRNA_H-canaliculatus_F_contig10867.812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10867:525..2519- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCCCTTTGACGCGGAGCTCTTCGTCGATCGTCTGGTGGAAGACGA
CGAGCCGCTTCCGTGGCGGAGCGAGATGTCGGGAGCGGACGGCGGCCGAC
CTCACCACATCTGGGAAGCTGCAACTCACCACACGGGTTCGGGTTCTTCC
GCGGTCCATGGCGGGGCGAAACTGTTCCTTCAGCCCGTCTACAGCTGGCC
CGACCAGCGACAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AACAGCAGCCTCGGCCGATGTGCGGTGACGGAGTCCAGCATGAGCCCAGC
CAAGACATGCCGATCGTCATCCCGATGTTCGACACGCTTTTCACGCCCTG
TCGGGCGATGCGACCCGAGCAAAGATTGGCGGTTACGTCTGACTTCGGGT
TTGGGTCTGCCGGCGAGGCGCGCAGCGGCAGCAACGTCTTCGAGTTCGGG
CCGGTCTACAACATCCCCCCTCCGCCGGAGACGTTCGCCCCGCCGCTACA
GGTGCCCATGGCCCCCCTGCGGCAGCCTTCGGGGGGGCGCCTCGGCGGTG
GGCTCTATCCGCCCGGCAGCGGCGAGATGACTCTCCGGAGGCCTGCCGGC
GAACAGCACCATGACTCGGAGTTCAAGTACGTGGCAAATTCCGATCTTGT
TCGCGGCGCCGCCTCCGCGTTACCGCTGACGCTGACGGGAGCGGACGCCC
ACTCCTCCCGCGAATACGATGACGAGCGCTACGCCTTCCTCAGGAGGCAA
GAGGCTGCGCTGTTTGTGGGGGCTGGGTACCTCTCGACCGGAGCGGGAAG
GGCCTCGGGCGCGGAGGAGGCGGGGATCTCTCCCGCGGAGCGCGCGTCGG
CGGTCGACTGGCTCTCGAAATTGCACTCGGCCGCTCCCGCCGCTTCGGGC
GTCAGCGAGCACCTTTCTCTGGAAACGCTGTTTCTGGCGGTGAACCTGAT
GGACCGCTTCCTCTCGACGGACCAGGGGGCGAGGGCGGTGTGCGGCGGTG
GTGGCGGCGGTCTTCGCGGTGGCGGCGGCGGCGGCGGCGCTGGGCCGAGA
CCGACGCTGAAGCTTGCGGCCGCGGCGTGCCTGGCTCTCTCCTCCAAGTA
TCAGGACACGCAGGCAGTCTCTCTCTGGGGCGTGGCGGCGGCGGCGGCAT
CGGTCCCCGGAACTTTCTCCGCTTCTTCTGCGACGTCGGTGCAAAATGGC
GCTACGCGTGGAGGGGACAGCGGCGGTCCCGGGGTTGGCAGCAACGGGAG
CAGTAGCAACAGGAACATCAGTGGCTGCGACGGCGGCGGAGACTTTTTCC
GTGTTCTAGGCCTCGGGGGCGGCGGCGGCGGCGAAAACAGCAGCAGCAGC
TGTGGTGGTGGTGGTGACGACGACAACATTGACGTCGGCGCGGCGCGGAA
GAAGCTCGTGACGATGGAGACGCAAGTGGCATCGGCCCTGGGTTTCCGCC
TGACGGTGCCGACCCCCCTTTCCTTCCTGGGCGTGTTCTTGCGCCGGGCG
GAAACGCTCGGCTACCTTCTGCAGCAGCAGCAGGCGGCCGGTGGCGGCGC
CGGTAGCGCGGCCGAACGCGTGCGCGAGGAGGCGCAGCAGATCCTGCTCT
GCATGCTGCGGGAGGCCTGCTCCCTGGAGCACTCCCCGTCCTCGCTCGCG
GCGTGCGCGCTGTACTGGGCCTCCTGCGTCACATCCCCGGGGGCGGCGCC
TCCCTCGTCGTTCGCCTTCTTGGCGGTGACGGGGTACGAGCTGGAGCAGC
TGTGTCGCTGTCTCAGGGACATGGAGGGCGTAAGGACGGGAGGGGGCGTT
GGCGGGGGAAGGCACGGCTCTGGCTCGTTCTACGCCTCCTTTTCCTTGCT
TGGCGGCGGTGGCGGAGGCGGAGGCGGGGGTGGCATCGGGGGCGGCGGGG
GGGGCGGCGACTGGGCCGGCGCGGCTTTCCCGGAACATGCCGGAAATTCG
TTGTTCGGGGCGGGAGGGGGGCACCCCGCTATCGCGGCGCTGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10867:525..2519-

>mRNA_H-canaliculatus_F_contig10867.812.1 ID=mRNA_H-canaliculatus_F_contig10867.812.1|Name=mRNA_H-canaliculatus_F_contig10867.812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10867:525..2519- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCCCTTTGACGCGGAGCTCTTCGTCGATCGTCTGGTGGAAGACGA
CGAGCCGCTTCCGTGGCGGAGCGAGATGTCGGGAGCGGACGGCGGCCGAC
CTCACCACATCTGGGAAGCTGCAACTCACCACACGGGTTCGGGTTCTTCC
GCGGTCCATGGCGGGGCGAAACTGTTCCTTCAGCCCGTCTACAGCTGGCC
CGACCAGCGACAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AACAGCAGCCTCGGCCGATGTGCGGTGACGGAGTCCAGCATGAGCCCAGC
CAAGACATGCCGATCGTCATCCCGATGTTCGACACGCTTTTCACGCCCTG
TCGGGCGATGCGACCCGAGCAAAGATTGGCGGTTACGTCTGACTTCGGGT
TTGGGTCTGCCGGCGAGGCGCGCAGCGGCAGCAACGTCTTCGAGTTCGGG
CCGGTCTACAACATCCCCCCTCCGCCGGAGACGTTCGCCCCGCCGCTACA
GGTGCCCATGGCCCCCCTGCGGCAGCCTTCGGGGGGGCGCCTCGGCGGTG
GGCTCTATCCGCCCGGCAGCGGCGAGATGACTCTCCGGAGGCCTGCCGGC
GAACAGCACCATGACTCGGAGTTCAAGTACGTGGCAAATTCCGATCTTGT
TCGCGGCGCCGCCTCCGCGTTACCGCTGACGCTGACGGGAGCGGACGCCC
ACTCCTCCCGCGAATACGATGACGAGCGCTACGCCTTCCTCAGGAGGCAA
GAGGCTGCGCTGTTTGTGGGGGCTGGGTACCTCTCGACCGGAGCGGGAAG
GGCCTCGGGCGCGGAGGAGGCGGGGATCTCTCCCGCGGAGCGCGCGTCGG
CGGTCGACTGGCTCTCGAAATTGCACTCGGCCGCTCCCGCCGCTTCGGGC
ATGGAGCCCTTTGACGCGGAGCTCTTCGTCGATCGTCTGGTGGAAGACGA
CGAGCCGCTTCCGTGGCGGAGCGAGATGTCGGGAGCGGACGGCGGCCGAC
CTCACCACATCTGGGAAGCTGCAACTCACCACACGGGTTCGGGTTCTTCC
GCGGTCCATGGCGGGGCGAAACTGTTCCTTCAGCCCGTCTACAGCTGGCC
CGACCAGCGACAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AACAGCAGCCTCGGCCGATGTGCGGTGACGGAGTCCAGCATGAGCCCAGC
CAAGACATGCCGATCGTCATCCCGATGTTCGACACGCTTTTCACGCCCTG
TCGGGCGATGCGACCCGAGCAAAGATTGGCGGTTACGTCTGACTTCGGGT
TTGGGTCTGCCGGCGAGGCGCGCAGCGGCAGCAACGTCTTCGAGTTCGGG
CCGGTCTACAACATCCCCCCTCCGCCGGAGACGTTCGCCCCGCCGCTACA
GGTGCCCATGGCCCCCCTGCGGCAGCCTTCGGGGGGGCGCCTCGGCGGTG
GGCTCTATCCGCCCGGCAGCGGCGAGATGACTCTCCGGAGGCCTGCCGGC
GAACAGCACCATGACTCGGAGTTCAAGTACGTGGCAAATTCCGATCTTGT
TCGCGGCGCCGCCTCCGCGTTACCGCTGACGCTGACGGGAGCGGACGCCC
ACTCCTCCCGCGAATACGATGACGAGCGCTACGCCTTCCTCAGGAGGCAA
GAGGCTGCGCTGTTTGTGGGGGCTGGGTACCTCTCGACCGGAGCGGGAAG
GGCCTCGGGCGCGGAGGAGGCGGGGATCTCTCCCGCGGAGCGCGCGTCGG
CGGTCGACTGGCTCTCGAAATTGCACTCGGCCGCTCCCGCCGCTTCGGGC
GGGGCGAGGGCGGTGTGCGGCGGTGGTGGCGGCGGTCTTCGCGGTGGCGG
CGGCGGCGGCGGCGCTGGGCCGAGACCGACGCTGAAGCTTGCGGCCGCGG
CGTGCCTGGCTCTCTCCTCCAAGTATCAGGACACGCAGGCAGTCTCTCTC
TGGGGCGTGGCGGCGGCGGCGGCATCGGTCCCCGGAACTTTCTCCGCTTC
TTCTGCGACGTCGGTGCAAAATGGCGCTACGCGTGGAGGGGACAGCGGCG
GTCCCGGGGTTGGCAGCAACGGGAGCAGTAGCAACAGGAACATCAGTGGC
TGCGACGGCGGCGGAGACTTTTTCCGTGTTCTAGGCCTCGGGGGCGGCGG
CGGCGGCGAAAACAGCAGCAGCAGCTGTGGTGGTGGTGGTGACGACGACA
ACATTGACGTCGGCGCGGCGCGGAAGAAGCTCGTGACGATGGAGACGCAA
GTGGCATCGGCCCTGGGTTTCCGCCTGACGGTGCCGACCCCCCTTTCCTT
CCTGGGCGTGTTCTTGCGCCGGGCGGAAACGCTCGGCTACCTTCTGCAGC
AGCAGCAGGCGGCCGGTGGCGGCGCCGGTAGCGCGGCCGAACGCGTGCGC
GAGGAGGCGCAGCAGATCCTGCTCTGCATGCTGCGGGAGGCCTGCTCCCT
GGAGCACTCCCCGTCCTCGCTCGCGGCGTGCGCGCTGTACTGGGCCTCCT
GCGTCACATCCCCGGGGGCGGCGCCTCCCTCGTCGTTCGCCTTCTTGGCG
GTGACGGGGTACGAGCTGGAGCAGCTGTGTCGCTGTCTCAGGGACATGGA
GGGCGTAAGGACGGGAGGGGGCGTTGGCGGGGGAAGGCACGGCTCTGGCT
CGTTCTACGCCTCCTTTTCCTTGCTTGGCGGCGGTGGCGGAGGCGGAGGC
GGGGGTGGCATCGGGGGCGGCGGGGGGGGCGGCGACTGGGCCGGCGCGGC
TTTCCCGGAACATGCCGGAAATTCGTTGTTCGGGGCGGGAGGGGGGCACC
CCGCTATCGCGGCGCTGTAGGGGGCGAGGGCGGTGTGCGGCGGTGGTGGC
GGCGGTCTTCGCGGTGGCGGCGGCGGCGGCGGCGCTGGGCCGAGACCGAC
GCTGAAGCTTGCGGCCGCGGCGTGCCTGGCTCTCTCCTCCAAGTATCAGG
ACACGCAGGCAGTCTCTCTCTGGGGCGTGGCGGCGGCGGCGGCATCGGTC
CCCGGAACTTTCTCCGCTTCTTCTGCGACGTCGGTGCAAAATGGCGCTAC
GCGTGGAGGGGACAGCGGCGGTCCCGGGGTTGGCAGCAACGGGAGCAGTA
GCAACAGGAACATCAGTGGCTGCGACGGCGGCGGAGACTTTTTCCGTGTT
CTAGGCCTCGGGGGCGGCGGCGGCGGCGAAAACAGCAGCAGCAGCTGTGG
TGGTGGTGGTGACGACGACAACATTGACGTCGGCGCGGCGCGGAAGAAGC
TCGTGACGATGGAGACGCAAGTGGCATCGGCCCTGGGTTTCCGCCTGACG
GTGCCGACCCCCCTTTCCTTCCTGGGCGTGTTCTTGCGCCGGGCGGAAAC
GCTCGGCTACCTTCTGCAGCAGCAGCAGGCGGCCGGTGGCGGCGCCGGTA
GCGCGGCCGAACGCGTGCGCGAGGAGGCGCAGCAGATCCTGCTCTGCATG
CTGCGGGAGGCCTGCTCCCTGGAGCACTCCCCGTCCTCGCTCGCGGCGTG
CGCGCTGTACTGGGCCTCCTGCGTCACATCCCCGGGGGCGGCGCCTCCCT
CGTCGTTCGCCTTCTTGGCGGTGACGGGGTACGAGCTGGAGCAGCTGTGT
CGCTGTCTCAGGGACATGGAGGGCGTAAGGACGGGAGGGGGCGTTGGCGG
GGGAAGGCACGGCTCTGGCTCGTTCTACGCCTCCTTTTCCTTGCTTGGCG
GCGGTGGCGGAGGCGGAGGCGGGGGTGGCATCGGGGGCGGCGGGGGGGGC
GGCGACTGGGCCGGCGCGGCTTTCCCGGAACATGCCGGAAATTCGTTGTT
CGGGGCGGGAGGGGGGCACCCCGCTATCGCGGCGCTGTAG
back to top