mRNA_H-canaliculatus_F_contig1086.807.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1086.807.1
Unique NamemRNA_H-canaliculatus_F_contig1086.807.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1086.807.1 vs. uniprot
Match: D7FKP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.480e-22
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 3 
Query:  225 MPTSRRPPTWRRPSGGKRCIVKAGLKGNNLTRMSSGKYDMDLLRGLSRIEEEALKDLVHMYEVESEDELPVSFDLRQLVDLKEDVRRAFLRNMLRACPAI-DAVP----AFIDKYLEHINKLDARVADAI 599
            MP  R P   RR  G +RCI    L+G  L R  SG++DMD    L+R EE ALKDLV +++VESE+ LPVSFD+ +L++L+E  RR+F++NML+A  +  DA P    +FIDKYLE    L A +A  I
Sbjct:   14 MPAGRPPSGRRRSLGNRRCI----LRGEGLCRTESGEHDMDTRGALARTEEAALKDLVAIFKVESEEHLPVSFDVHRLLELEEGERRSFVKNMLQAYSSCTDATPMSIDSFIDKYLEQTRILAALLAAGI 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1086.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKP7_ECTSI2.480e-2248.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1086contigH-canaliculatus_F_contig1086:22050..25112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001660.1
Exons4
Model size1705
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1086.807.1prot_H-canaliculatus_F_contig1086.807.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1086 23102..25107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.848756-UTR-H-canaliculatus_F_contig1086:22049..231011622928753.848756-UTR-H-canaliculatus_F_contig1086:22049..23101Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1086 22050..23101 -
1696845551.4800947-UTR-H-canaliculatus_F_contig1086:22049..231011696845551.4800947-UTR-H-canaliculatus_F_contig1086:22049..23101Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1086 22050..23101 -
1622928753.968687-UTR-H-canaliculatus_F_contig1086:25107..251121622928753.968687-UTR-H-canaliculatus_F_contig1086:25107..25112Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1086 25108..25112 -
1696845551.5300484-UTR-H-canaliculatus_F_contig1086:25107..251121696845551.5300484-UTR-H-canaliculatus_F_contig1086:25107..25112Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1086 25108..25112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.8653607-CDS-H-canaliculatus_F_contig1086:23101..233441622928753.8653607-CDS-H-canaliculatus_F_contig1086:23101..23344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 23102..23344 -
1696845551.4918902-CDS-H-canaliculatus_F_contig1086:23101..233441696845551.4918902-CDS-H-canaliculatus_F_contig1086:23101..23344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 23102..23344 -
1622928753.8795218-CDS-H-canaliculatus_F_contig1086:23738..238581622928753.8795218-CDS-H-canaliculatus_F_contig1086:23738..23858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 23739..23858 -
1696845551.5010498-CDS-H-canaliculatus_F_contig1086:23738..238581696845551.5010498-CDS-H-canaliculatus_F_contig1086:23738..23858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 23739..23858 -
1622928753.8978522-CDS-H-canaliculatus_F_contig1086:24193..242691622928753.8978522-CDS-H-canaliculatus_F_contig1086:24193..24269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 24194..24269 -
1696845551.5106585-CDS-H-canaliculatus_F_contig1086:24193..242691696845551.5106585-CDS-H-canaliculatus_F_contig1086:24193..24269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 24194..24269 -
1622928753.9498682-CDS-H-canaliculatus_F_contig1086:24898..251071622928753.9498682-CDS-H-canaliculatus_F_contig1086:24898..25107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 24899..25107 -
1696845551.5207784-CDS-H-canaliculatus_F_contig1086:24898..251071696845551.5207784-CDS-H-canaliculatus_F_contig1086:24898..25107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1086 24899..25107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1086.807.1

>prot_H-canaliculatus_F_contig1086.807.1 ID=prot_H-canaliculatus_F_contig1086.807.1|Name=mRNA_H-canaliculatus_F_contig1086.807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
MSWVSGLGFLGRCTPPSHRHTRLHTQLRITALLKRPLIVQTLWLNPLNRP
PTARRLQISSDTGNFKARASMEVMPTSRRPPTWRRPSGGKRCIVKAGLKG
NNLTRMSSGKYDMDLLRGLSRIEEEALKDLVHMYEVESEDELPVSFDLRQ
LVDLKEDVRRAFLRNMLRACPAIDAVPAFIDKYLEHINKLDARVADAICG
TGPTVIFATGRRLPA*
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mRNA from alignment at H-canaliculatus_F_contig1086:22050..25112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1086.807.1 ID=mRNA_H-canaliculatus_F_contig1086.807.1|Name=mRNA_H-canaliculatus_F_contig1086.807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3063bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1086:22050..25112- (Hapterophycus canaliculatus Oshoro5f female)
CGAAAATGTCGTGGGTTTCTGGTTTAGGGTTTTTAGGTCGCTGCACCCCC
CCTTCGCACAGACACACCCGCCTTCACACACAACTGCGCATTACCGCCCT
TCTCAAGCGCCCTCTGATTGTGCAAACGCTTTGGCTCAATCCGCTGAACC
GTCCTCCAACCGCGCGAAGACTTCAGATTTCATCGGATACAGGGAACTTC
AAGGCGCGAGCAAGGTACGAACGAACAGACCCAAGCCGCATGCCGACGAA
ATAGAGATTGAAAACATCCATCTGGGGAGTCGTAGCCTTGTCTCTACTCC
CCAGAGTAGAGGCACCATCCGTCAGCCTACTGACTCACTTCGACGGGTTT
GCACCAAGCCTTCCGCCTTTGCCGCCCGTCTGGGTTCGTCGAACTCGGTG
CACAGTCGGAGGTTGGGTTGGTGAGCCAGAAGCTCTCGCCTCGAGAGAGC
GCCTGCATCCAAGCGTCGGGAAATTGCTCTCTAATTTATCCGGCTGTAGT
CTATCGCGCATTCGCCACGAGCGAGGTATTTGATACACCAACCAAAGTAT
CGGCAACCAGGCCTTTACAGCCGGGAATCTGCGGTCAAGTGTCGAGCGAG
GGAGCAATCTCTGCAGACCGATGACTGGGTGCCCTTTGGCCTCGACGACC
CGACCCTCTACAGTCTAGCAACACCACAGAGTTTTGTCTTTACTATTCTT
GTTCGCTGCTTCTAATACCTCTACGAACGTGGAATCATATGTGCGTGCGT
GTTGCTGCCGTGGCTGTCTGCCGGAAACTCTGACGGGTCTACAACTCTCC
TCGGCGGCTTCCCCTGGCTTGACGCTTGGCTTAAACACTACAGCATGGAG
GTGATGCCGACCAGCCGAAGGCCACCGACCTGGAGACGGCCCAGCGGAGG
AAAACGTTGCATCGTTAAGGTGCGCGCCACCTGTACTCGTAGATAGCGCC
GATACTGCATCCACCGATTCTGTACGTCTGTGTCCGCTCATGTCGTAGAT
ATGGTCGATGCGCCCGCTCGATGTTCACCATGGATTTGGTAGCAAACTAT
GTACTAGAACGAACAATGACTGCGAGCGGTGGGCAGCTCTATTTAACCTG
TCTTATAGGTAGGAAGCAGGTGGAGCCCATAGAAAATACATTTGGTCCCT
CTCCTCTTTCTTTTACCTCTGGTGGCTCTGTCCTGTGAAGTGGATATTTT
CGATAGACTTTGTCAGACAACTCCCCCCCCACGGCCGTTGTCCTCGCTTG
AAAGGCCGGGCTCAAGGGCAATAACCTCACGCGGATGTCTTCCGGGAAGT
ATGATATGGATCTCCTGAGGGGGCTTTCGAGAATAGAGGAAGAGGCGCTG
AAAGACCTCGTCCACATGTACGAGGTGAGATAATCGACGTCCGCATCTGA
TGTCTGTTAAATAATCTTGCAGCGATGAGAGATGCGAGAGAGCGCGCAGA
ATGCGCAAGCGGTGACGTTACGGACTGCTGAGGTTGTTGATGTTAGAAAG
AGCACTTTACCACTGTTAGAAAGAGCACTTTACCACTAGACTATAGTCAG
CGCTGACTATGGTCTAGTGGTAAAGTGCTCTTTCTAACAGTTGATGGCGG
CGAGCCGGGAGGAAGGACGATGCTCTAGAGAGGACGCCCGAATTGGCCGT
CGTGGTGCCTCATTTCAGACGACGGGCGTACGTAATGTTTTTTGCTTGAA
GTGTGCAATGATACTTTGGGTGGACAACCGTTGACGTCTATCTGCGATAC
TTGTTGCATTGATCTCAGGTGGAGAGCGAGGATGAACTCCCAGTATCGTT
CGATCTGCGCCAGCTTGTGGACTTGAAGGAAGACGTACGCCGAGCTTTTC
TCAGGAACATGCTCCGTGCCTGCCCTGCCATCGATGCCGTTCCGGCGTTC
ATCGACAAGTACTTGGAGCACATAAACAAGCTCGATGCCCGTGTAGCGGA
CGCCATCTGTGGTACGGGACCAACAGTTATTTTCGCGACAGGACGTCGCT
TGCCCGCGTAAAGATACGGGGTGTTGCGTCTGTGTAGTGTATTGATTCGT
GGGTGTTTTCTGTACGTGTACGGCATACATGGTGTGTAGTAGCCCTGAGA
GTTTGCGACGTGAGCTGTGTTCCACCTCTTGTTTAGGTATGTTGCTGTCT
TTTAAGTGCGTGGTTGCTTGGTGTTCTCTTATTTCTGTGTTGTCGTGGGC
ATCGCGCCATCCCAAGTTGCAAAACCACTTGTTGAGCGTCTGGTTTGGCC
ATGCATGTGAGTAAATGTCCTCCTTGTCTACATGAAACTCGGAAGGTTGC
GAATGAGGAAGGGTCTCTCGTGGAAAGTATTTTACTCAAACATTGTCGAA
GCGTTTCCTCCTTGTTTTTAAATACGCTTGTGGACGAATGTGCGGTTTAC
ACGTCCTGACGCGTTCGGAACGTTCCGGGGATCTTAGTAAGTTGTGCTTT
ATTGAAAGGCTTCCCAGAAGCAGACGTCTACCGACGGCGGCGGAGATAGG
GGCAAGGTGCATCTCTCGCCGACTCGGATGAGACAATTGAATGCTCCAAT
TGTAAAAGGCACGATATTCTTGTGACTTCAACACTTCTTCAGACGTTTGG
AGGCGGGCGCTCGTGTACGCACTTTGGTATTCTACCTGCACCGTCCCAAC
GCCCCCGGCTCTTCTAGACCTAGCTCGAAATTAAATGTAGCTCGATACGT
ACGTGACAGTGACGATATGTCTATCTCATAATTGTACCTGATGTCAGGCT
CCTTCCGCTTTGTGTCTGTGAAATATTGTCCACTGCTGTATTCCTTAGTG
TTTTTGTGTCCAAAGGTGTGTGTAAGCTATGATGTCGACGAGGAGAGGTG
GAATCTTGCTGGTCTGCGTTGATGTTGATCTGTGTGTCGTAAGGCATATC
TTGCCGATGTAAGGTTTGCAAAATGGTCTTCTTCTGGTCTGAGGACTTGA
TATAAATATCTGAATATGTAAATGTGTGTAATGAGCACATGGACCGGACT
GGGTGGAACTGAACTTGCACAAATATCTCGAGACCCGGCTCGTGTTCCTG
ATCTTTTTACGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1086:22050..25112-

>mRNA_H-canaliculatus_F_contig1086.807.1 ID=mRNA_H-canaliculatus_F_contig1086.807.1|Name=mRNA_H-canaliculatus_F_contig1086.807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1086:22050..25112- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGTGGGTTTCTGGTTTAGGGTTTTTAGGTCGCTGCACCCCCCCTTC
GCACAGACACACCCGCCTTCACACACAACTGCGCATTACCGCCCTTCTCA
AGCGCCCTCTGATTGTGCAAACGCTTTGGCTCAATCCGCTGAACCGTCCT
CCAACCGCGCGAAGACTTCAGATTTCATCGGATACAGGGAACTTCAAGGC
GCGAGCAAGATGTCGTGGGTTTCTGGTTTAGGGTTTTTAGGTCGCTGCAC
CCCCCCTTCGCACAGACACACCCGCCTTCACACACAACTGCGCATTACCG
CCCTTCTCAAGCGCCCTCTGATTGTGCAAACGCTTTGGCTCAATCCGCTG
AACCGTCCTCCAACCGCGCGAAGACTTCAGATTTCATCGGATACAGGGAA
CTTCAAGGCGCGAGCAAGCATGGAGGTGATGCCGACCAGCCGAAGGCCAC
CGACCTGGAGACGGCCCAGCGGAGGAAAACGTTGCATCGTTAAGCATGGA
GGTGATGCCGACCAGCCGAAGGCCACCGACCTGGAGACGGCCCAGCGGAG
GAAAACGTTGCATCGTTAAGGCCGGGCTCAAGGGCAATAACCTCACGCGG
ATGTCTTCCGGGAAGTATGATATGGATCTCCTGAGGGGGCTTTCGAGAAT
AGAGGAAGAGGCGCTGAAAGACCTCGTCCACATGTACGAGGCCGGGCTCA
AGGGCAATAACCTCACGCGGATGTCTTCCGGGAAGTATGATATGGATCTC
CTGAGGGGGCTTTCGAGAATAGAGGAAGAGGCGCTGAAAGACCTCGTCCA
CATGTACGAGGTGGAGAGCGAGGATGAACTCCCAGTATCGTTCGATCTGC
GCCAGCTTGTGGACTTGAAGGAAGACGTACGCCGAGCTTTTCTCAGGAAC
ATGCTCCGTGCCTGCCCTGCCATCGATGCCGTTCCGGCGTTCATCGACAA
GTACTTGGAGCACATAAACAAGCTCGATGCCCGTGTAGCGGACGCCATCT
GTGGTACGGGACCAACAGTTATTTTCGCGACAGGACGTCGCTTGCCCGCG
TAAGTGGAGAGCGAGGATGAACTCCCAGTATCGTTCGATCTGCGCCAGCT
TGTGGACTTGAAGGAAGACGTACGCCGAGCTTTTCTCAGGAACATGCTCC
GTGCCTGCCCTGCCATCGATGCCGTTCCGGCGTTCATCGACAAGTACTTG
GAGCACATAAACAAGCTCGATGCCCGTGTAGCGGACGCCATCTGTGGTAC
GGGACCAACAGTTATTTTCGCGACAGGACGTCGCTTGCCCGCGTAA
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