mRNA_H-canaliculatus_F_contig10847.796.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10847.796.1
Unique NamemRNA_H-canaliculatus_F_contig10847.796.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10847.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10847contigH-canaliculatus_F_contig10847:139..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928752.2198868-UTR-H-canaliculatus_F_contig10847:138..1631622928752.2198868-UTR-H-canaliculatus_F_contig10847:138..163Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10847 139..163 +
1696845550.7261708-UTR-H-canaliculatus_F_contig10847:138..1631696845550.7261708-UTR-H-canaliculatus_F_contig10847:138..163Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10847 139..163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928752.2349734-CDS-H-canaliculatus_F_contig10847:163..6131622928752.2349734-CDS-H-canaliculatus_F_contig10847:163..613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10847 164..613 +
1696845550.741171-CDS-H-canaliculatus_F_contig10847:163..6131696845550.741171-CDS-H-canaliculatus_F_contig10847:163..613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10847 164..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10847.796.1prot_H-canaliculatus_F_contig10847.796.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10847 164..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10847.796.1

>prot_H-canaliculatus_F_contig10847.796.1 ID=prot_H-canaliculatus_F_contig10847.796.1|Name=mRNA_H-canaliculatus_F_contig10847.796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
MQPGRGQGGKGMSREAGRKGRKEMGRQEGEVAVKGTGNQAGRPAKPQTIF
QVTGESKYSSIGIWSAESPPQSCSRVGLGRQNLKTIFHVTGESKRSSIGV
RSAESPPQSCSRVGFSLTVDGAVSWSCSARGGSLPPPADRSAAIWCRSSD
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mRNA from alignment at H-canaliculatus_F_contig10847:139..613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10847.796.1 ID=mRNA_H-canaliculatus_F_contig10847.796.1|Name=mRNA_H-canaliculatus_F_contig10847.796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=475bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10847:139..613+ (Hapterophycus canaliculatus Oshoro5f female)
AATTTGGAGAGGGAATGGTACTGTCATGCAGCCAGGCAGGGGGCAGGGAG
GCAAGGGAATGAGCAGGGAGGCAGGGAGAAAGGGAAGGAAAGAGATGGGT
AGGCAGGAAGGGGAGGTAGCAGTAAAGGGAACAGGCAATCAGGCAGGCAG
GCCGGCAAAACCTCAAACCATATTTCAGGTAACGGGCGAATCAAAATACA
GCAGCATCGGTATCTGGAGCGCGGAGTCACCTCCTCAATCTTGCAGCAGG
GTAGGATTAGGCCGGCAAAACCTCAAAACCATATTTCACGTAACGGGGGA
ATCAAAACGCAGCAGCATCGGTGTCCGGAGCGCGGAGTCGCCTCCTCAAT
CTTGCAGCAGGGTAGGATTCTCGCTCACCGTCGATGGGGCCGTTTCTTGG
TCTTGCTCCGCGCGCGGAGGCTCGCTCCCACCACCGGCAGATCGAAGCGC
GGCCATCTGGTGTCGCTCCTCGGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10847:139..613+

>mRNA_H-canaliculatus_F_contig10847.796.1 ID=mRNA_H-canaliculatus_F_contig10847.796.1|Name=mRNA_H-canaliculatus_F_contig10847.796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10847:139..613+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCCAGGCAGGGGGCAGGGAGGCAAGGGAATGAGCAGGGAGGCAGG
GAGAAAGGGAAGGAAAGAGATGGGTAGGCAGGAAGGGGAGGTAGCAGTAA
AGGGAACAGGCAATCAGGCAGGCAGGCCGGCAAAACCTCAAACCATATTT
CAGGTAACGGGCGAATCAAAATACAGCAGCATCGGTATCTGGAGCGCGGA
GTCACCTCCTCAATCTTGCAGCAGGGTAGGATTAGGCCGGCAAAACCTCA
AAACCATATTTCACGTAACGGGGGAATCAAAACGCAGCAGCATCGGTGTC
CGGAGCGCGGAGTCGCCTCCTCAATCTTGCAGCAGGGTAGGATTCTCGCT
CACCGTCGATGGGGCCGTTTCTTGGTCTTGCTCCGCGCGCGGAGGCTCGC
TCCCACCACCGGCAGATCGAAGCGCGGCCATCTGGTGTCGCTCCTCGGAT
ATGCAGCCAGGCAGGGGGCAGGGAGGCAAGGGAATGAGCAGGGAGGCAGG
GAGAAAGGGAAGGAAAGAGATGGGTAGGCAGGAAGGGGAGGTAGCAGTAA
AGGGAACAGGCAATCAGGCAGGCAGGCCGGCAAAACCTCAAACCATATTT
CAGGTAACGGGCGAATCAAAATACAGCAGCATCGGTATCTGGAGCGCGGA
GTCACCTCCTCAATCTTGCAGCAGGGTAGGATTAGGCCGGCAAAACCTCA
AAACCATATTTCACGTAACGGGGGAATCAAAACGCAGCAGCATCGGTGTC
CGGAGCGCGGAGTCGCCTCCTCAATCTTGCAGCAGGGTAGGATTCTCGCT
CACCGTCGATGGGGCCGTTTCTTGGTCTTGCTCCGCGCGCGGAGGCTCGC
TCCCACCACCGGCAGATCGAAGCGCGGCCATCTGGTGTCGCTCCTCGGAT
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