mRNA_H-canaliculatus_F_contig10844.795.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10844.795.1
Unique NamemRNA_H-canaliculatus_F_contig10844.795.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: D8LSE0_ECTSI (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE0_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 2.690e-81
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 1
Query:    1 MLKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            ML K+GFGVVV+SGAGAAASFTD+AYEEAGAT+VKG EAWKADIVVKV+PPTPEEAALVE RTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKV VV
Sbjct:    1 MLTKDGFGVVVQSGAGAAASFTDEAYEEAGATVVKGSEAWKADIVVKVEPPTPEEAALVEARTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVLVV 147          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A6H5JMZ8_9PHAE (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ8_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.350e-76
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 1
Query:    1 MLKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            ML KEGFGVVVESGAGAAASFTD+AYEEAGAT+VKG EAWKADIVV  DPP+PEEAALVE+RTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLL GQMTAAGNVKPAKV VV
Sbjct:  135 MLTKEGFGVVVESGAGAAASFTDEAYEEAGATVVKGSEAWKADIVV--DPPSPEEAALVEDRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLGGQMTAAGNVKPAKVLVV 279          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A7S2HY14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY14_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.860e-55
Identity = 97/143 (67.83%), Postives = 117/143 (81.82%), Query Frame = 1
Query:   16 GFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWK-ADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            GF V++E GAGAA+ F+D  YE AGA IV  EE WK +DIV+K+ PPT +EA L+E+R++IS ++P Q+ +LVKQLE Q ATV AMDCIPRTLSRGQTYDALSSQANI+GYRAV+EA++EFGR   GQMTAAG V PAKV VV
Sbjct:    1 GFTVMIEEGAGAASHFSDADYEAAGAKIVPTEEVWKGSDIVMKLRPPTTDEAGLLEDRSIISFIWPGQNKELVKQLEDQKATVFAMDCIPRTLSRGQTYDALSSQANISGYRAVLEASNEFGRFFAGQMTAAGKVPPAKVLVV 143          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A7S0E2C6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E2C6_9EUKA)

HSP 1 Score: 181 bits (458), Expect = 5.680e-54
Identity = 98/146 (67.12%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L K GF V VE GAG  ASF+D AYE+AGA+IV  + A+ A +V KV  P+PEEA LV +R L+S LFPAQ+G L++QL  Q AT  AMDCIPRTLSRGQ++DALSSQANIAGYRAVIEAA EFGR   GQMTAAG V PAKV V+
Sbjct:   64 LVKAGFAVKVEKGAGVGASFSDAAYEKAGASIVDRDTAFGASLVTKVQVPSPEEATLVNDRMLLSFLFPAQNGPLLEQLAAQKATAFAMDCIPRTLSRGQSFDALSSQANIAGYRAVIEAAGEFGRFFAGQMTAAGKVPPAKVLVL 209          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A6V2B5X5_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B5X5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 4.580e-53
Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L   GF V++ESGAGAA+ F+D+ YE AGA IV  ++ WK+D+V+K+ PPTPEEA  +E+R+LIS ++P Q+ +LV+QL+ Q ATV AMDCIPRTLSRGQTYDALSSQANI+GYRAV+EA++EFGR   GQMTAAG V PAKV VV
Sbjct:   77 LTAPGFSVLIESGAGAASHFSDKDYEAAGAKIVAADDVWKSDLVMKLRPPTPEEATKLEDRSLISFVWPGQNKELVQQLQDQNATVFAMDCIPRTLSRGQTYDALSSQANISGYRAVLEASNEFGRFFAGQMTAAGKVPPAKVLVV 222          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: K0TNJ9_THAOC (AlaDh_PNT_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNJ9_THAOC)

HSP 1 Score: 177 bits (448), Expect = 1.310e-52
Identity = 92/147 (62.59%), Postives = 115/147 (78.23%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWK-ADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L K GF V+VE GAGA++ F+D  YE AGA +V+  + WK +DIV+K+ PPT EE   +E+R++IS L+P Q+ +L++QLE Q +T  AMDCIPRTLSRGQTYD+LSSQANI GYRAVIEA++EFGR   GQMTAAG V PAKV VV
Sbjct:  103 LVKPGFSVLVEKGAGASSHFSDADYEAAGAKVVETGDVWKKSDIVMKIRPPTSEEVTQLEDRSIISFLYPGQNKELIQQLESQKSTAFAMDCIPRTLSRGQTYDSLSSQANITGYRAVIEASNEFGRFFAGQMTAAGKVPPAKVLVV 249          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A1Z5KSL6_FISSO (Proton-translocating NAD(P)(+) transhydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSL6_FISSO)

HSP 1 Score: 186 bits (471), Expect = 1.030e-51
Identity = 97/147 (65.99%), Postives = 118/147 (80.27%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWK-ADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L K GF V++E GAG  A FTD+AY+ AGATIV  ++ WK +DIV+K+ PPTPE+   +ENRT++S L+P Q+  LV+QL+ QGAT  AMDCIPRTLSRGQTYDALSSQANI+GYRAV+EA+HEFGR   GQMTAAG V PAKV V+
Sbjct:   72 LVKPGFQVLIEKGAGEGAHFTDEAYQAAGATIV--DDVWKDSDIVLKLRPPTPEQVKALENRTIVSFLWPRQNEALVQQLQDQGATAFAMDCIPRTLSRGQTYDALSSQANISGYRAVLEASHEFGRFFAGQMTAAGKVPPAKVLVI 216          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A7S3STK5_EMIHU (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3STK5_EMIHU)

HSP 1 Score: 185 bits (469), Expect = 1.910e-51
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L KEG  V VE+GAGAAA F+D AYE+AGA++V  +EAW A +V KV PPT EEA LV +R L+S +FPAQ+  LVKQL+ Q ATV AMDCIPRTLSRGQ +DALSSQANIAGYRAVIEA+  FGR   GQMTAAG V PAKV V+
Sbjct:   62 LVKEGITVKVEAGAGAAADFSDAAYEKAGASVVSRDEAWGASLVTKVMPPTEEEAKLVGDRMLLSFVFPAQNDALVKQLQAQKATVFAMDCIPRTLSRGQAFDALSSQANIAGYRAVIEASGVFGRFFAGQMTAAGKVPPAKVMVL 207          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A7S2LQP6_9STRA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQP6_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.620e-51
Identity = 97/147 (65.99%), Postives = 118/147 (80.27%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWK-ADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L K GF V++E GAG+++ F+D  Y  AGA IV+ EE WK +DIV+K+ PPT EEA+ +E+RTLIS ++PAQ+ +LV+QL+ Q AT  AMDCIPRTLSRGQTYDALSSQANI GYRAVIEA++EFGR   GQMTAAG V PAKV VV
Sbjct:   77 LVKPGFNVLIEKGAGSSSHFSDAEYASAGAKIVEAEEVWKNSDIVMKLRPPTTEEASKLEDRTLISFIYPAQNKELVQQLQDQKATAFAMDCIPRTLSRGQTYDALSSQANITGYRAVIEASNEFGRFFAGQMTAAGKVPPAKVLVV 223          
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Match: A0A7S0LNL4_9EUKA (Proton-translocating NAD(P)(+) transhydrogenase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LNL4_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 9.090e-51
Identity = 95/146 (65.07%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    4 LKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDPPTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRGQTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV 441
            L KEGF V+VE GAGA+A F D  YE+AGA +V  EEA+KA ++ KV  PT EE  L+ENR L+S LFPAQ+  L++QL+ Q AT  AMDCIPRTLSRGQ +DALSSQANI+GYRAV+EA+H FGR   GQMTAAG V PAKV V+
Sbjct:   64 LVKEGFSVLVERGAGASADFGDSMYEDAGAKLVSREEAYKASLITKVTVPTSEEVKLIENRMLLSFLFPAQNAPLLEQLKAQKATAFAMDCIPRTLSRGQAFDALSSQANISGYRAVVEASHVFGRFFAGQMTAAGKVPPAKVLVL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10844.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE0_ECTSI2.690e-8193.88Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A6H5JMZ8_9PHAE1.350e-7693.20Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2HY14_9STRA4.860e-5567.83Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S0E2C6_9EUKA5.680e-5467.12Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A6V2B5X5_9STRA4.580e-5365.75Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
K0TNJ9_THAOC1.310e-5262.59AlaDh_PNT_N domain-containing protein n=1 Tax=Thal... [more]
A0A1Z5KSL6_FISSO1.030e-5165.99Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S3STK5_EMIHU1.910e-5168.49Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S2LQP6_9STRA3.620e-5165.99Proton-translocating NAD(P)(+) transhydrogenase n=... [more]
A0A7S0LNL4_9EUKA9.090e-5165.07Proton-translocating NAD(P)(+) transhydrogenase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10844contigH-canaliculatus_F_contig10844:301..3696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue2.5e-69
Seed eggNOG ortholog2880.D8LSE0
KEGG rclassRC00001
KEGG koko:K00323
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.Transhydrogenase
EggNOG OGs2QQ0A@2759,COG1282@1
EC1.6.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10844.795.1prot_H-canaliculatus_F_contig10844.795.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10844 301..3696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928752.1149862-CDS-H-canaliculatus_F_contig10844:300..4141622928752.1149862-CDS-H-canaliculatus_F_contig10844:300..414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 301..414 -
1696845550.6965542-CDS-H-canaliculatus_F_contig10844:300..4141696845550.6965542-CDS-H-canaliculatus_F_contig10844:300..414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 301..414 -
1622928752.1303506-CDS-H-canaliculatus_F_contig10844:2227..24131622928752.1303506-CDS-H-canaliculatus_F_contig10844:2227..2413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 2228..2413 -
1696845550.707398-CDS-H-canaliculatus_F_contig10844:2227..24131696845550.707398-CDS-H-canaliculatus_F_contig10844:2227..2413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 2228..2413 -
1622928752.1682928-CDS-H-canaliculatus_F_contig10844:3555..36961622928752.1682928-CDS-H-canaliculatus_F_contig10844:3555..3696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 3556..3696 -
1696845550.716128-CDS-H-canaliculatus_F_contig10844:3555..36961696845550.716128-CDS-H-canaliculatus_F_contig10844:3555..3696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10844 3556..3696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10844.795.1

>prot_H-canaliculatus_F_contig10844.795.1 ID=prot_H-canaliculatus_F_contig10844.795.1|Name=mRNA_H-canaliculatus_F_contig10844.795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp
MLKKEGFGVVVESGAGAAASFTDQAYEEAGATIVKGEEAWKADIVVKVDP
PTPEEAALVENRTLISLLFPAQSGDLVKQLEGQGATVMAMDCIPRTLSRG
QTYDALSSQANIAGYRAVIEAAHEFGRLLCGQMTAAGNVKPAKVRVV
back to top

mRNA from alignment at H-canaliculatus_F_contig10844:301..3696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10844.795.1 ID=mRNA_H-canaliculatus_F_contig10844.795.1|Name=mRNA_H-canaliculatus_F_contig10844.795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10844:301..3696- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGAAGAAGGAGGGGTTCGGGGTTGTCGTTGAGTCCGGCGCCGGCGC GGCCGCCAGCTTCACCGACCAGGCCTACGAAGAGGCCGGCGCCACCATCG TCAAGGGAGAGGAGGCCTGGAAGGCGGACATCGTCGTTAAGGTGCCGTCG CCGCCGCCGCACGTAGTCGTGAGATCGGCAGCCGTGCGCGCAATGCCTCC GGTGTTGTTTAGATCTGCAGCAGCCGCATAACCGCGTAGCGAACTCGTGC GCTCGACGGAGGGCTGGTTCGCGCACGGATTCCGGTGATTCGGAACAAGG TGCTCTGAACTTTGGGTTTGCTCACACCAGACGAGCGGCGGACAGGTGTG CAACTACATATCCCCGCACGGCTAGGGTGAAATTAGACTCCAGCTCCGAG CACGACCCCCACGCGTCCCTCTTCGTGCTGCGCTGAAGCGCTCATCCGGG CTCATGTTCCACCGTGACGGAGAGAGCGGTCTCATGTCCAATTACCACTT AGTCCCAGCGGCCTACGCGGCTTAAAAAAAACCGTGTGGCTTGCGACAAG GACACAAAGACGATGTCCCGCCACTCGAGGGCCTATGACTCTTCCTTATT TATTCAGGTAAAATCGATAGTGTAGGTGGAGAGAGAGAGTGGGCCCCGTA TTTTTTTTGGGGGGGGGACGCCGCTACCTCGGATTGAAAAAGGGCGCTGG TCAACGCTGTTGGCGAAGCGTTGTCTTGGTGGGCGGCAGCTTACCGTAGT GCAAGGCTGAAGCTGCGACAGCCGATGTTTGATAGCGCCTCGTCGCAGCA CACCAACTTATGTCTGTGCGTAGTGATCCTCCCCTGTGATAGTGGAAAGC GAACGGCGTTTCGACTGGAAAGGCACCTGTTTCGCGGCACCTGCGCCCAG CAACCCCAACAGAGCACGGGCATGCTTACGCAGGAACGACCGCAGCAGCA GCGGCAGTGGCACTCGTCGTGAAGGCAATTTCGGGCGATGGTGTTGATCT CGAGCTCGTGTTCTGGGCAAGCAGCGGTTGTGGGACAAACACAGCAGTGG CAACCTCCAAAATTCAAGCCATCATACGAAGGTCCAAATCGACCAACCCT GACTTGAAACCCGCGACCTTTGCCTACAAGGAATTCCCGCCGCGGTAGTG CCTTTTTCGACGATCGACGGTCTCCCTATCCCCGTCTCCCTCGTTTCTCT CTGGAGAACCAGGAACCGAAGAAAACTGGCAGCCTGTCACCCCCCCCCCG CCCCTCTCTACAACATTTTTTATCGTAAAATAGGTGGACCCCCCTACCCC GGAGGAGGCTGCGCTTGTGGAGAACCGCACGCTCATCAGCTTGCTCTTCC CGGCGCAAAGTGGGGACCTCGTGAAGCAGCTGGAGGGGCAGGGGGCCACG GTGATGGCCATGGACTGCATCCCTCGGACGCTGTCGCGGGGACAGACGTA CGACGCTCTCAGCTCGCAGGTGTGGACGGTGATGCGCGAAGCGTGCGCGG TGTAGCGGTGCGCCTGGCTTTCTCCGGAGAACGTGGTCGTGGTTTTTTGA GGCAAAGCGGGGGGCGTGCTGGCTAGTGGGTGGGTAAGCCTCCTCGTGGC GATGCCCTCGGTTATCGTGTCTACCTGATCTAGGCAGGGAGGCAGCGGCA AAGGAAGGCAGCGGTCGTACCGAATCGGTGACTGTGGGCATGCACTCCCG TCTCTTATCCGTGTCTGGGTCGTGCGATTTTGGCACCTGGTACCGCTGTC GGGGGACGCACTTTCTGTCCCGGGTCGGACGCCCCCTGCTGCTCGACGCT CGTGCGCGCAGCAGCGCCAGGTGGGCCCATCCAAGGCTATCCGTGCACAC CGATCAAGTTCGACGCTCGACGAGCCGATCGGACGCCTTGCAACAAAATT CTCGAGTAGTCAACACCAAACGAAGAAATGCCCTCCTTGGAGACAAAATA TCAAATTATAACGACTCGGGGGGGTTGTGTTGAATTGTTTTAACAGTCGG TGAGGGTTCGATATGATGATGGAAGAGCATGTTATGATGTTTTGCGTGTT GAGGCGCCAATCCAAGGTTTGTCGTCCCCGTCGTTGTTGATCCACACGCG AGGCTCGAAGTCACGTTAGCGGCGGAGCTGAAGGAGAAGACCCCACCCAC GAAGAGAACGATGATCAGCCCGCAGACGGCTAGCCTTCGTTGCCGTACAA GCCGCACAGCAGTTGATGGTGTTGAGGACTCGAATGTGTACACACCTCTG AGAGTGCACACACACACGTGTTTTGGAGAAGAGGTCTTGCATCAAGAGCA GATGTAGGGAGGAACGATTCGACGCTTCTCCAAAGCGTTCCGCAAAGCCT CAGCTCTCTGCTTGAGAGGGCCACGTGCAGCGTAACGGCGGGATCCAAAA GCCGGCTTCTATGAACGCGAATGAGAGGGCGTGCGGGTAGCTGACGCGAA ATGGCCAACTGCCCTTCTCCGTGCTCTGTTTTACGTAGTACGTGGTGTAC GGAACTGGAGACCACCGTGTTGTATCTTGGAAACGGTCGGAATGTGAAAT TCGTGCTTGGTTTCTCACCTTTCGAACGAGCGTGCAAAGGTGTGCGATTG TGGAAAGGTGTGAATGATGGTATGATCAGTAAATATCCTTTTACGCAGAT TTTGGACAGGGGACATTCTGTGCGGCAGTCCGCAATGTTGTTTCCCCTTG TACGACGACGAACTTCTTCGCACAGGTGTCTGTGGTGACGGTTCCGTCGC CTGTGAAACATGAGTCTTACAATCGTAAATCCCGTCGTCTATCCACCTAC GACGTACTAGTTGAGTCGAGCAAAAACCTGTCAATAGATAAAGGATTAAT ACAACCATCTATGGTCACACCATCTATGGTCACAGGCCACTGCCGTAAAC AGAAGCCCGGCCCACGGCAGTGTTGACCCACAACCAGGGGCGGCTGCTTT CCTTCCTTCGATGATATGATGTGTAGCGAAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAAAGATTGAAGTAAGTCTTCCCGAGACAAGACAGAGAGG CGAAGACCCTCCGTCCTTCCGTCCCGGGAACGGCAACCCTGTTGTCAAAC ATGCCAACCTGGGTACCTCCTCTCTCTTCTCGAAGGCGCTTTTTGTCTGG AAACATGGCTCTCTGACGCCTCCTGCGCCCACCCGAAATCAATCCCCCCC CGCTTTACCCCCCACCCGATGATCAACCTTTTTTCTGTCTCGCGTTTCTC TTGTTTCTTCTTTGTGGGTGTTTGCATGACAGGCGAACATCGCTGGTTAC CGTGCCGTCATCGAAGCGGCTCACGAATTCGGCCGTCTCCTGTGCGGCCA GATGACGGCCGCGGGGAACGTCAAACCCGCGAAGGTAAGGGTCGTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10844:301..3696-

>mRNA_H-canaliculatus_F_contig10844.795.1 ID=mRNA_H-canaliculatus_F_contig10844.795.1|Name=mRNA_H-canaliculatus_F_contig10844.795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10844:301..3696- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGAAGAAGGAGGGGTTCGGGGTTGTCGTTGAGTCCGGCGCCGGCGC
GGCCGCCAGCTTCACCGACCAGGCCTACGAAGAGGCCGGCGCCACCATCG
TCAAGGGAGAGGAGGCCTGGAAGGCGGACATCGTCGTTAAGATGCTGAAG
AAGGAGGGGTTCGGGGTTGTCGTTGAGTCCGGCGCCGGCGCGGCCGCCAG
CTTCACCGACCAGGCCTACGAAGAGGCCGGCGCCACCATCGTCAAGGGAG
AGGAGGCCTGGAAGGCGGACATCGTCGTTAAGGTGGACCCCCCTACCCCG
GAGGAGGCTGCGCTTGTGGAGAACCGCACGCTCATCAGCTTGCTCTTCCC
GGCGCAAAGTGGGGACCTCGTGAAGCAGCTGGAGGGGCAGGGGGCCACGG
TGATGGCCATGGACTGCATCCCTCGGACGCTGTCGCGGGGACAGACGTAC
GACGCTCTCAGCTCGCAGGTGGACCCCCCTACCCCGGAGGAGGCTGCGCT
TGTGGAGAACCGCACGCTCATCAGCTTGCTCTTCCCGGCGCAAAGTGGGG
ACCTCGTGAAGCAGCTGGAGGGGCAGGGGGCCACGGTGATGGCCATGGAC
TGCATCCCTCGGACGCTGTCGCGGGGACAGACGTACGACGCTCTCAGCTC
GCAGGCGAACATCGCTGGTTACCGTGCCGTCATCGAAGCGGCTCACGAAT
TCGGCCGTCTCCTGTGCGGCCAGATGACGGCCGCGGGGAACGTCAAACCC
GCGAAGGTAAGGGTCGTGGCGAACATCGCTGGTTACCGTGCCGTCATCGA
AGCGGCTCACGAATTCGGCCGTCTCCTGTGCGGCCAGATGACGGCCGCGG
GGAACGTCAAACCCGCGAAGGTAAGGGTCGTG
back to top