mRNA_H-canaliculatus_F_contig1084.793.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1084.793.1
Unique NamemRNA_H-canaliculatus_F_contig1084.793.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1084.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1084contigH-canaliculatus_F_contig1084:29654..30511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size835
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1084.793.1prot_H-canaliculatus_F_contig1084.793.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1084 29706..30148 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928750.7269464-UTR-H-canaliculatus_F_contig1084:29653..297051622928750.7269464-UTR-H-canaliculatus_F_contig1084:29653..29705Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1084 29654..29705 +
1696845550.2992887-UTR-H-canaliculatus_F_contig1084:29653..297051696845550.2992887-UTR-H-canaliculatus_F_contig1084:29653..29705Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1084 29654..29705 +
1622928750.780521-UTR-H-canaliculatus_F_contig1084:30148..305111622928750.780521-UTR-H-canaliculatus_F_contig1084:30148..30511Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1084 30149..30511 +
1696845550.3267934-UTR-H-canaliculatus_F_contig1084:30148..305111696845550.3267934-UTR-H-canaliculatus_F_contig1084:30148..30511Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1084 30149..30511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928750.7432244-CDS-H-canaliculatus_F_contig1084:29705..300741622928750.7432244-CDS-H-canaliculatus_F_contig1084:29705..30074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 29706..30074 +
1696845550.3077817-CDS-H-canaliculatus_F_contig1084:29705..300741696845550.3077817-CDS-H-canaliculatus_F_contig1084:29705..30074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 29706..30074 +
1622928750.7576592-CDS-H-canaliculatus_F_contig1084:30097..301481622928750.7576592-CDS-H-canaliculatus_F_contig1084:30097..30148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 30098..30148 +
1696845550.3175457-CDS-H-canaliculatus_F_contig1084:30097..301481696845550.3175457-CDS-H-canaliculatus_F_contig1084:30097..30148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 30098..30148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1084.793.1

>prot_H-canaliculatus_F_contig1084.793.1 ID=prot_H-canaliculatus_F_contig1084.793.1|Name=mRNA_H-canaliculatus_F_contig1084.793.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MISQKSEQASNIYLISNNNFTDFFYVSDSKLQFVSNSSEANTISQSSTRP
TLGTMYTHRLKMVQLMRKVILPSAFRTVSSASAMGFIWKKSKLNEGGLQP
NTCSTRPQMSWGSMCPREGHESPYTPEQQPCPRNSYLSQ*
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mRNA from alignment at H-canaliculatus_F_contig1084:29654..30511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1084.793.1 ID=mRNA_H-canaliculatus_F_contig1084.793.1|Name=mRNA_H-canaliculatus_F_contig1084.793.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:29654..30511+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTGGAGTGCGAAGTTGACAATTTCGTGGACTCGTCTATAGTTACTAAG
GCATGATCTCTCAAAAAAGTGAACAGGCGTCAAACATCTACCTGATATCA
AACAACAACTTCACAGACTTTTTCTATGTATCAGACAGCAAGCTACAGTT
CGTTTCAAATTCCTCTGAAGCAAACACAATCAGTCAGAGCAGCACACGAC
CCACTTTAGGCACAATGTACACACACCGCTTGAAAATGGTGCAACTAATG
CGAAAGGTAATCCTTCCCTCAGCCTTCCGCACGGTTTCATCTGCAAGCGC
GATGGGTTTCATCTGGAAGAAGAGCAAGCTCAACGAGGGCGGCCTGCAGC
CAAATACCTGCAGCACACGACCTCAGATGTCGTGGGGCTCAATGTGTCCC
AGAGAAGGCCATGAGTCACCCCGTACATCGTTCCTCGTTTCATATACACC
CCCGAGCAGCAACCATGCCCGAGAAATTCCTACTTATCCCAGTAGGTCTA
CAGCGCTACCACGGGGACACTACAACACGGTACAATATTGTTCAATGAAA
ATTACACTCCGTAAACCCAACATGCTTCCGGATAATCTCCGGGGCGGATA
CTGCTCCGGAAAAGCAATGCATACTTGTATCTCTCCAGGCAACGGTCACT
CAAATGCTGTTGTAGGACTTGGTCCCGACAGCTGGTGAACTCCGGTGGCG
GCCTTCTCAAAAAATTCGGGAAGGTTTCGACGAACTTCGACATCACAGGC
TTCCCCGGAACAAATGTGCCTCCCATTCAGTTCAGGAGACACAACTTCCG
AGAGTGTGAAGACTAATTCACCTCCCGTCGCCCCGCCTGCGGTTTCGGTT
CCCGTTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1084:29654..30511+

>mRNA_H-canaliculatus_F_contig1084.793.1 ID=mRNA_H-canaliculatus_F_contig1084.793.1|Name=mRNA_H-canaliculatus_F_contig1084.793.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:29654..30511+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTCTCAAAAAAGTGAACAGGCGTCAAACATCTACCTGATATCAAA
CAACAACTTCACAGACTTTTTCTATGTATCAGACAGCAAGCTACAGTTCG
TTTCAAATTCCTCTGAAGCAAACACAATCAGTCAGAGCAGCACACGACCC
ACTTTAGGCACAATGTACACACACCGCTTGAAAATGGTGCAACTAATGCG
AAAGGTAATCCTTCCCTCAGCCTTCCGCACGGTTTCATCTGCAAGCGCGA
TGGGTTTCATCTGGAAGAAGAGCAAGCTCAACGAGGGCGGCCTGCAGCCA
AATACCTGCAGCACACGACCTCAGATGTCGTGGGGCTCAATGTGTCCCAG
AGAAGGCCATGAGTCACCCATGATCTCTCAAAAAAGTGAACAGGCGTCAA
ACATCTACCTGATATCAAACAACAACTTCACAGACTTTTTCTATGTATCA
GACAGCAAGCTACAGTTCGTTTCAAATTCCTCTGAAGCAAACACAATCAG
TCAGAGCAGCACACGACCCACTTTAGGCACAATGTACACACACCGCTTGA
AAATGGTGCAACTAATGCGAAAGGTAATCCTTCCCTCAGCCTTCCGCACG
GTTTCATCTGCAAGCGCGATGGGTTTCATCTGGAAGAAGAGCAAGCTCAA
CGAGGGCGGCCTGCAGCCAAATACCTGCAGCACACGACCTCAGATGTCGT
GGGGCTCAATGTGTCCCAGAGAAGGCCATGAGTCACCCTACACCCCCGAG
CAGCAACCATGCCCGAGAAATTCCTACTTATCCCAGTAGTACACCCCCGA
GCAGCAACCATGCCCGAGAAATTCCTACTTATCCCAGTAG
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