mRNA_H-canaliculatus_F_contig1083.785.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1083.785.1
Unique NamemRNA_H-canaliculatus_F_contig1083.785.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1083.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1083contigH-canaliculatus_F_contig1083:28790..29442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size653
Cds size543
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928749.6461504-UTR-H-canaliculatus_F_contig1083:28789..288991622928749.6461504-UTR-H-canaliculatus_F_contig1083:28789..28899Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1083 28790..28899 +
1696845549.8386204-UTR-H-canaliculatus_F_contig1083:28789..288991696845549.8386204-UTR-H-canaliculatus_F_contig1083:28789..28899Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1083 28790..28899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928749.6773436-CDS-H-canaliculatus_F_contig1083:28899..294421622928749.6773436-CDS-H-canaliculatus_F_contig1083:28899..29442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1083 28900..29442 +
1696845549.8501005-CDS-H-canaliculatus_F_contig1083:28899..294421696845549.8501005-CDS-H-canaliculatus_F_contig1083:28899..29442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1083 28900..29442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1083.785.1prot_H-canaliculatus_F_contig1083.785.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1083 28900..29442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1083.785.1

>prot_H-canaliculatus_F_contig1083.785.1 ID=prot_H-canaliculatus_F_contig1083.785.1|Name=mRNA_H-canaliculatus_F_contig1083.785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=181bp
MVAAHEASELRTLNFAWLVVRLRRHAKVFGYAAIRERTKNRRKQKTNSRK
MSISGNSIYISLCACVCICACPCTFSPTSSFSHLRKAHFVAGPTGFSPGY
FRNEKTRGLHCHAAIDPSFLGVSPETVGLRVYALSEVVQGVVEEAIEGVV
AAPVHLLHENLDGDLVSLETSLMAGNRVDIT
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mRNA from alignment at H-canaliculatus_F_contig1083:28790..29442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1083.785.1 ID=mRNA_H-canaliculatus_F_contig1083.785.1|Name=mRNA_H-canaliculatus_F_contig1083.785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=653bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1083:28790..29442+ (Hapterophycus canaliculatus Oshoro5f female)
TGTTAGTCACAAAGGTATGTGCGTGTGCGTGTCTTTATGGGAAAAGATCG
AACGCTGCGAACCAAGGATGAGATCGTGGTCCTTGACCTCCCACGTGCTG
CCGCCGCTAGATGGTGGCGGCGCACGAAGCGTCGGAGCTGCGCACGCTAA
ATTTTGCATGGTTGGTGGTGAGACTGCGTAGACACGCGAAAGTATTTGGA
TATGCCGCAATAAGGGAAAGGACGAAAAATCGGAGGAAACAGAAGACTAA
CAGCCGCAAAATGAGCATTAGCGGCAATTCGATATACATTTCTTTGTGTG
CGTGTGTGTGTATTTGTGCTTGTCCATGTACGTTTTCCCCCACTTCGTCG
TTTTCACACCTTAGAAAGGCCCATTTCGTCGCGGGACCGACGGGCTTCTC
GCCTGGATATTTCCGCAACGAAAAAACTCGCGGGCTTCATTGCCACGCGG
CCATCGATCCGTCTTTCTTGGGCGTCTCGCCGGAGACCGTCGGGCTGCGA
GTGTACGCGCTGTCTGAAGTTGTGCAGGGAGTTGTTGAGGAAGCTATCGA
GGGGGTCGTTGCCGCGCCCGTGCACCTCCTCCACGAAAACCTCGATGGAG
ATCTTGTAAGCCTGGAAACATCGTTGATGGCTGGGAATCGGGTGGATATC
ACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1083:28790..29442+

>mRNA_H-canaliculatus_F_contig1083.785.1 ID=mRNA_H-canaliculatus_F_contig1083.785.1|Name=mRNA_H-canaliculatus_F_contig1083.785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1086bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1083:28790..29442+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGCGGCGCACGAAGCGTCGGAGCTGCGCACGCTAAATTTTGCATG
GTTGGTGGTGAGACTGCGTAGACACGCGAAAGTATTTGGATATGCCGCAA
TAAGGGAAAGGACGAAAAATCGGAGGAAACAGAAGACTAACAGCCGCAAA
ATGAGCATTAGCGGCAATTCGATATACATTTCTTTGTGTGCGTGTGTGTG
TATTTGTGCTTGTCCATGTACGTTTTCCCCCACTTCGTCGTTTTCACACC
TTAGAAAGGCCCATTTCGTCGCGGGACCGACGGGCTTCTCGCCTGGATAT
TTCCGCAACGAAAAAACTCGCGGGCTTCATTGCCACGCGGCCATCGATCC
GTCTTTCTTGGGCGTCTCGCCGGAGACCGTCGGGCTGCGAGTGTACGCGC
TGTCTGAAGTTGTGCAGGGAGTTGTTGAGGAAGCTATCGAGGGGGTCGTT
GCCGCGCCCGTGCACCTCCTCCACGAAAACCTCGATGGAGATCTTGTAAG
CCTGGAAACATCGTTGATGGCTGGGAATCGGGTGGATATCACAATGGTGG
CGGCGCACGAAGCGTCGGAGCTGCGCACGCTAAATTTTGCATGGTTGGTG
GTGAGACTGCGTAGACACGCGAAAGTATTTGGATATGCCGCAATAAGGGA
AAGGACGAAAAATCGGAGGAAACAGAAGACTAACAGCCGCAAAATGAGCA
TTAGCGGCAATTCGATATACATTTCTTTGTGTGCGTGTGTGTGTATTTGT
GCTTGTCCATGTACGTTTTCCCCCACTTCGTCGTTTTCACACCTTAGAAA
GGCCCATTTCGTCGCGGGACCGACGGGCTTCTCGCCTGGATATTTCCGCA
ACGAAAAAACTCGCGGGCTTCATTGCCACGCGGCCATCGATCCGTCTTTC
TTGGGCGTCTCGCCGGAGACCGTCGGGCTGCGAGTGTACGCGCTGTCTGA
AGTTGTGCAGGGAGTTGTTGAGGAAGCTATCGAGGGGGTCGTTGCCGCGC
CCGTGCACCTCCTCCACGAAAACCTCGATGGAGATCTTGTAAGCCTGGAA
ACATCGTTGATGGCTGGGAATCGGGTGGATATCACA
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