mRNA_H-canaliculatus_F_contig1082.775.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1082.775.1
Unique NamemRNA_H-canaliculatus_F_contig1082.775.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A6H5L1E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.590e-42
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 MSVLSSLKTRLGSALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            MSVL+ +KTRLG  +GV+    SRG+ARERLSIILAHQRGDVLLEGIDLKALQAEV+ECVKKYISVDA+KPIQLSVKQDGAVDVFEMQV
Sbjct:    1 MSVLTGIKTRLG-LVGVSTNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVKKYISVDASKPIQLSVKQDGAVDVFEMQV 88          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: D7G8Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q5_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.910e-41
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 MSVLSSLKTRLGSALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            MS+L+ +KTRLG  +GV+    SRG+ARERLSIILAHQRGDVLLEGIDLKALQAEV+ECVKKYISVDA+KPIQLSVKQDGAVDVFEMQV
Sbjct:   48 MSLLTGIKTRLG-LVGVSTNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVKKYISVDASKPIQLSVKQDGAVDVFEMQV 135          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: H3GMJ4_PHYRM (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GMJ4_PHYRM)

HSP 1 Score: 84.3 bits (207), Expect = 3.670e-19
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   31 LGSALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            L S  G A   +S+ +A+ERL IILAHQRG  +L G+DL ALQ E+ ECV+++I V +   I ++VK +G +D+FEMQV
Sbjct:   17 LASLFGEAEHASSKSVAKERLQIILAHQRGSQVLAGVDLAALQQELLECVQRHIKVASGANINIAVKNEGQLDIFEMQV 95          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A2D4BJA3_PYTIN (Cell division topological specificity factor MinE (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJA3_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 4.010e-18
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   19 LKTRLGSALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQ 264
            L + LG A       +S+ +A+ERL IILAHQRG  +L G+DL+ALQ+E+ ECV+++I V     I ++VK +G +D+FEMQ
Sbjct:   14 LASLLGDAPAATASSSSKSVAKERLQIILAHQRGSQVLAGVDLQALQSELLECVQRHIRVANGANINIAVKHEGQLDIFEMQ 95          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A8K1CBG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBG6_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 4.090e-18
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   52 ANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            A Q +S+ +A+ERL IILAHQRG  +L G+DL+ALQ+E+ ECV+++I V     I ++VK +G +D+FEMQV
Sbjct:   30 ATQASSKSVAKERLQIILAHQRGSQVLAGVDLQALQSELLECVQRHIRVANGGNINIAVKHEGQLDIFEMQV 101          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: F0WLF0_9STRA (Uncharacterized protein AlNc14C144G7338 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLF0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.280e-18
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   37 SALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            SA+  +++  S  IA+ERL IILAHQRG  +L G+DL ALQ ++ ECV++YI V     I ++VKQ+G+ D+FEMQV
Sbjct:   51 SAVLSSSKPMSASIAKERLQIILAHQRGSQILAGVDLAALQKDLLECVQRYIGVTHDANINIAVKQEGSFDIFEMQV 127          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A484E334_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E334_BRELC)

HSP 1 Score: 80.5 bits (197), Expect = 1.370e-17
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   31 LGSALGVANQ-ENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            L S  G A    +S+ IA+ERL IILAHQRG  +L G+DL  LQ E+ ECV+++I+V     I +SVK +G +D+FEMQV
Sbjct:   17 LASLFGEAESVSSSKSIAKERLQIILAHQRGSQILAGVDLAVLQKELLECVQRHITVATGANINISVKNEGQLDIFEMQV 96          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A024TF11_9STRA (Cell division topological specificity factor MinE n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF11_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.570e-17
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   67 SRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQVRATQH 282
            S+ IA+ERL IILAHQRG   L G+DL ALQAE+  CV+++I+V   + + ++VK +G++D+FEMQV    H
Sbjct:   28 SKNIAKERLQIILAHQRGSQALSGVDLNALQAELLACVQRHIAVADGERVNIAVKHEGSLDIFEMQVPVHPH 99          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: K3WAM2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAM2_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 1.940e-17
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   19 LKTRLGSALGV-ANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            L +  G A G  A + +S+ +A+ERL IILAHQRG  +L G+DL+ALQ E+ ECV+++I V     I ++VK +G +D+FEMQV
Sbjct:   19 LASLFGEAPGTEAAKTSSKSVAKERLQIILAHQRGSQVLAGVDLQALQKELLECVQRHIQVANGANINIAVKHEGQLDIFEMQV 102          
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Match: A0A6U2GMJ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2GMJ9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.960e-17
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   40 ALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLKALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQV 267
            A+G A +  SR +ARERLS+ILA QRG  LL G+D++ALQ +V   V+++I V   +P+  +VK +G V++FEM V
Sbjct:    8 AVGAATKNKSRSVARERLSVILASQRGSELLAGVDMEALQKDVLAVVERHIQVAQNRPVNFNVKNEGDVNLFEMSV 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1082.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1E1_9PHAE1.590e-4284.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8Q5_ECTSI1.910e-4183.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3GMJ4_PHYRM3.670e-1950.63Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A2D4BJA3_PYTIN4.010e-1847.56Cell division topological specificity factor MinE ... [more]
A0A8K1CBG6_PYTOL4.090e-1852.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WLF0_9STRA8.280e-1851.95Uncharacterized protein AlNc14C144G7338 n=1 Tax=Al... [more]
A0A484E334_BRELC1.370e-1751.25Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024TF11_9STRA1.570e-1751.39Cell division topological specificity factor MinE ... [more]
K3WAM2_GLOUD1.940e-1748.81Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U2GMJ9_9STRA1.960e-1748.68Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1082contigH-canaliculatus_F_contig1082:2195..2995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.9e-32
Seed eggNOG ortholog2880.D7G8Q5
EggNOG free text desc.Septum formation topological specificity factor MinE
EggNOG OGs2CYKK@1,2S50K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSeptum formation topological specificity factor MinE
Ec32 orthologEc-22_002620.1
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928748.8518891-CDS-H-canaliculatus_F_contig1082:2194..22961622928748.8518891-CDS-H-canaliculatus_F_contig1082:2194..2296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1082 2195..2296 -
1696845549.4592893-CDS-H-canaliculatus_F_contig1082:2194..22961696845549.4592893-CDS-H-canaliculatus_F_contig1082:2194..2296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1082 2195..2296 -
1622928748.871025-CDS-H-canaliculatus_F_contig1082:2812..29951622928748.871025-CDS-H-canaliculatus_F_contig1082:2812..2995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1082 2813..2995 -
1696845549.4753058-CDS-H-canaliculatus_F_contig1082:2812..29951696845549.4753058-CDS-H-canaliculatus_F_contig1082:2812..2995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1082 2813..2995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1082.775.1prot_H-canaliculatus_F_contig1082.775.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1082 2195..2995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1082.775.1

>prot_H-canaliculatus_F_contig1082.775.1 ID=prot_H-canaliculatus_F_contig1082.775.1|Name=mRNA_H-canaliculatus_F_contig1082.775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MSVLSSLKTRLGSALGVANQENSRGIARERLSIILAHQRGDVLLEGIDLK
ALQAEVFECVKKYISVDATKPIQLSVKQDGAVDVFEMQVRATQH*
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mRNA from alignment at H-canaliculatus_F_contig1082:2195..2995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1082.775.1 ID=mRNA_H-canaliculatus_F_contig1082.775.1|Name=mRNA_H-canaliculatus_F_contig1082.775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=801bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1082:2195..2995- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTGTGCTCTCTAGCTTGAAAACACGGCTTGGGTCGGCGCTCGGAGT CGCTAACCAGGAAAATTCAAGAGGGATCGCTAGAGAGCGTTTGTCCATAA TATTGGCCCACCAGCGTGGAGATGTTCTGCTCGAAGGAATCGACCTTAAG GCACTGCAAGCCGAGGTCTTCGAATGCGTGAAGGTATGGCAAGGTGGTAA GCTCCACAATGCGGGATGCAGATTCAGGTGTTTGTTTTCTTTAGAAAGTC TGTGGTCAACGCAACCAAGGATCATGCCGTTGACAATCCAATATTTCGAG TAATAGACCGACACCTTCAAAGACTGCCTCGGTAACTACAATATCCATAG TCAGAACTAGTTTGATGGGTTGTTGCACCAACACACGAAGGAGGTTATTC TTAACGGGTTCCAGCGACCGTTAGAGTGCGCCAGACAGCAGAGTTCTTCT GTTTAGCCCTTGATTGGAAAATGGCTAAATTTCGAAACAGAAGTCGCTAC CATTTTGCCACGGCAGGGCGCCGTGAAAATAAGCAAGCTTTGGAGACTAC ACCCTTCACGCACATAACGCAGCTTCACCTCATGAGCAGCTGCAGCTGTG TGCTCCCTGTCCCCTCAGTGTTCTGTTGTCCGCTGCTGCGATAACTCTGA AACTCGTTTGTACCTCCCGCGCGTACGCATATCCTTCATCTCAACCCAGA AATACATATCCGTGGACGCGACCAAGCCTATCCAGTTAAGCGTCAAACAA GACGGAGCGGTGGATGTCTTCGAAATGCAGGTGAGGGCTACTCAGCACTG A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1082:2195..2995-

>mRNA_H-canaliculatus_F_contig1082.775.1 ID=mRNA_H-canaliculatus_F_contig1082.775.1|Name=mRNA_H-canaliculatus_F_contig1082.775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1082:2195..2995- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTGTGCTCTCTAGCTTGAAAACACGGCTTGGGTCGGCGCTCGGAGT
CGCTAACCAGGAAAATTCAAGAGGGATCGCTAGAGAGCGTTTGTCCATAA
TATTGGCCCACCAGCGTGGAGATGTTCTGCTCGAAGGAATCGACCTTAAG
GCACTGCAAGCCGAGGTCTTCGAATGCGTGAAGATGAGTGTGCTCTCTAG
CTTGAAAACACGGCTTGGGTCGGCGCTCGGAGTCGCTAACCAGGAAAATT
CAAGAGGGATCGCTAGAGAGCGTTTGTCCATAATATTGGCCCACCAGCGT
GGAGATGTTCTGCTCGAAGGAATCGACCTTAAGGCACTGCAAGCCGAGGT
CTTCGAATGCGTGAAGAAATACATATCCGTGGACGCGACCAAGCCTATCC
AGTTAAGCGTCAAACAAGACGGAGCGGTGGATGTCTTCGAAATGCAGGTG
AGGGCTACTCAGCACTGAAAATACATATCCGTGGACGCGACCAAGCCTAT
CCAGTTAAGCGTCAAACAAGACGGAGCGGTGGATGTCTTCGAAATGCAGG
TGAGGGCTACTCAGCACTGA
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