mRNA_H-canaliculatus_F_contig10816.772.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10816.772.1
Unique NamemRNA_H-canaliculatus_F_contig10816.772.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10816.772.1 vs. uniprot
Match: A0A6H5K9V4_9PHAE (TFIID_20kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.050e-22
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 3 
Query:  261 AAKSMPVMKPLHPVVVPPVEPEPKEAKLVGPMNGVRLPALMEEVDPAYTLHADTEEVLARLPQ 449
            AAKSM  MKPLHPVVVPPVEPEPKEAKLVGPMNG+RLPALM+EVDPAY+LH DTEE+L  L Q
Sbjct:  383 AAKSMAAMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYSLHPDTEELLLALAQ 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10816.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9V4_9PHAE1.050e-2284.13TFIID_20kDa domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10816contigH-canaliculatus_F_contig10816:201..1695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003390.2
Exons2
Model size638
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10816.772.1prot_H-canaliculatus_F_contig10816.772.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10816 255..1492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928748.3333948-UTR-H-canaliculatus_F_contig10816:200..2541622928748.3333948-UTR-H-canaliculatus_F_contig10816:200..254Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10816 201..254 -
1696845549.322403-UTR-H-canaliculatus_F_contig10816:200..2541696845549.322403-UTR-H-canaliculatus_F_contig10816:200..254Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10816 201..254 -
1622928748.3967602-UTR-H-canaliculatus_F_contig10816:1492..16951622928748.3967602-UTR-H-canaliculatus_F_contig10816:1492..1695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10816 1493..1695 -
1696845549.3545046-UTR-H-canaliculatus_F_contig10816:1492..16951696845549.3545046-UTR-H-canaliculatus_F_contig10816:1492..1695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10816 1493..1695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928748.3527434-CDS-H-canaliculatus_F_contig10816:254..4821622928748.3527434-CDS-H-canaliculatus_F_contig10816:254..482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10816 255..482 -
1696845549.3324728-CDS-H-canaliculatus_F_contig10816:254..4821696845549.3324728-CDS-H-canaliculatus_F_contig10816:254..482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10816 255..482 -
1622928748.3734035-CDS-H-canaliculatus_F_contig10816:1339..14921622928748.3734035-CDS-H-canaliculatus_F_contig10816:1339..1492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10816 1340..1492 -
1696845549.342008-CDS-H-canaliculatus_F_contig10816:1339..14921696845549.342008-CDS-H-canaliculatus_F_contig10816:1339..1492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10816 1340..1492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10816.772.1

>prot_H-canaliculatus_F_contig10816.772.1 ID=prot_H-canaliculatus_F_contig10816.772.1|Name=mRNA_H-canaliculatus_F_contig10816.772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MLAVADAVAAAVAAGGGSAAAKSMPVMKPLHPVVVPPVEPEPKEAKLVGP
MNGVRLPALMEEVDPAYTLHADTEEVLARLPQSPVHCPPSPVLADPCLSP
CLSCVVQRCATLPPHVSYGKGTPVCR*
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mRNA from alignment at H-canaliculatus_F_contig10816:201..1695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10816.772.1 ID=mRNA_H-canaliculatus_F_contig10816.772.1|Name=mRNA_H-canaliculatus_F_contig10816.772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1495bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10816:201..1695- (Hapterophycus canaliculatus Oshoro5f female)
CTGCGCTCGCCAGCCGATCCCCGAGGGCGGAGAGCAACCTCCTCCGCGGC
GGCTTCGGGTGCGGGGCGGGCCTGATTTGGGCATCGCTGTCGATCTCACA
CGTGCCCGTGGCGTCGCTCGCACCTCGAGAGGCACCAGAGTGCACTCCAC
CCCGACCTCGAAACCGAGCCGTCGTCGTCGTGCGTGCGTGTGTTGGGTGG
ACGATGCTCGCCGTCGCAGATGCAGTGGCGGCGGCGGTTGCGGCGGGAGG
CGGGAGCGCGGCGGCGAAGTCGATGCCCGTGATGAAGCCCTTGCACCCGG
TGGTGGTGCCGCCCGTGGAGCCGGAGCCCAAGGAGGCTAAGCTTGTGGGG
CCGATGGTGGGTGCCGTTGAGTCGTGCTTGGACGCGCTGCGCGTTCACTG
AGATGTTGCCGTGGTTGCTGCTGTTGTTATTGTTGTGTTGCTGTTGTTGT
GTTGTTGTTGTTGCGGTTGCGAATGTTGTTGTTCGGCGCATGCTTTCTTC
CGTGGTGTCGCTGTAGCTCGTGTCCGTAAGGGATTGCTGCTTCCATTGTC
TTCTTTTTCATCGTCTTCCTCTGCTCCTCTCGCTCTTGTGGTTGGTGTGG
GTGTGGGTGTGGGTGTGGGTGTGGGTGTGGGTGTTGATGTTGGTGGCGTT
GTTGTTCTTGTTCTTGTTCTTGTTCTTGCTCGTGCTGGTGATGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTCTTCCTGTCCTTAATGTCGCCGCTGCGG
TTTCGTTTGATCTTGGTCGTGTCGCTTTCGCTGTTCACCTCGCTGTCACC
ATCGACAACAACCCACCCACTCCCCTCTACAAGGCCTACGACTCCTTGTG
TCTGGCTTGTGTCGCGATGCGCCGGCCCGTCCAATTTTTTCCGACCGCCT
CCGTTCACTCCGGCTGGATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTGTTTGGGT
TGTGGCGCGGTGCCCCGGCCCCCCCCACTTTTTCCCCCCCCCCCCCTCCC
CCCCCGCGGGCCCCCCCCCCCCCCCCCCCCCCGGCGCTGTATTGTGCATC
CACCCCCTCCCCCTCCCCTCCCCTTTATGAGTACGATGTACGTCTGTTCC
GTAGTTTTATGCCATGCCAATCGTCCCGCGTTATTGCTTTGCTCCTCGGC
CGTTTCCTGTCAGAACGGCGTGCGATTACCTGCGCTGATGGAGGAAGTGG
ACCCGGCCTACACGCTGCACGCCGACACCGAGGAGGTACTTGCGCGCCTC
CCCCAATCCCCCGTCCACTGTCCGCCGTCCCCCGTTCTCGCCGACCCTTG
TCTGTCCCCCTGCCTGTCTTGTGTGGTCCAGCGATGTGCCACTCTGCCCC
CTCACGTGTCCTACGGCAAAGGCACGCCTGTGTGTCGTTAGTAGCTACGT
CTCGCCCGCCCGCCTGCCCGCCTGCCTGCCTGCCTGCCTGCCTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10816:201..1695-

>mRNA_H-canaliculatus_F_contig10816.772.1 ID=mRNA_H-canaliculatus_F_contig10816.772.1|Name=mRNA_H-canaliculatus_F_contig10816.772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10816:201..1695- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCGCCGTCGCAGATGCAGTGGCGGCGGCGGTTGCGGCGGGAGGCGG
GAGCGCGGCGGCGAAGTCGATGCCCGTGATGAAGCCCTTGCACCCGGTGG
TGGTGCCGCCCGTGGAGCCGGAGCCCAAGGAGGCTAAGCTTGTGGGGCCG
ATGATGCTCGCCGTCGCAGATGCAGTGGCGGCGGCGGTTGCGGCGGGAGG
CGGGAGCGCGGCGGCGAAGTCGATGCCCGTGATGAAGCCCTTGCACCCGG
TGGTGGTGCCGCCCGTGGAGCCGGAGCCCAAGGAGGCTAAGCTTGTGGGG
CCGATGAACGGCGTGCGATTACCTGCGCTGATGGAGGAAGTGGACCCGGC
CTACACGCTGCACGCCGACACCGAGGAGGTACTTGCGCGCCTCCCCCAAT
CCCCCGTCCACTGTCCGCCGTCCCCCGTTCTCGCCGACCCTTGTCTGTCC
CCCTGCCTGTCTTGTGTGGTCCAGCGATGTGCCACTCTGCCCCCTCACGT
GTCCTACGGCAAAGGCACGCCTGTGTGTCGTTAGAACGGCGTGCGATTAC
CTGCGCTGATGGAGGAAGTGGACCCGGCCTACACGCTGCACGCCGACACC
GAGGAGGTACTTGCGCGCCTCCCCCAATCCCCCGTCCACTGTCCGCCGTC
CCCCGTTCTCGCCGACCCTTGTCTGTCCCCCTGCCTGTCTTGTGTGGTCC
AGCGATGTGCCACTCTGCCCCCTCACGTGTCCTACGGCAAAGGCACGCCT
GTGTGTCGTTAG
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