mRNA_H-canaliculatus_F_contig10814.770.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10814.770.1
Unique NamemRNA_H-canaliculatus_F_contig10814.770.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10814.770.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-8
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  271 GSTTLCVRDIARTIWREGNRSLSDSARSLHGSWFTALTLCC 393
            G  TLCVRD+A  +WREGN +LS+SARSLH SWF A+TL C
Sbjct:  739 GGATLCVRDMAIAMWREGNTTLSESARSLHSSWFAAITLSC 779
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BLAST of mRNA_H-canaliculatus_F_contig10814.770.1 vs. uniprot
Match: A0A6H5J6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.100e-7
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  280 TLCVRDIARTIWREGNRSLSDSARSLHGSWFTALTLCC 393
            TLCVRD+A  +WREGN +LS+SARSLH SWF A+TL C
Sbjct:  317 TLCVRDMAIAMWREGNTTLSESARSLHSSWFAAITLSC 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10814.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G719_ECTSI1.830e-868.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6E0_9PHAE1.100e-771.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10814contigH-canaliculatus_F_contig10814:598..3045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog2880.D7G719
EggNOG OGs2E5QG@1,2SCHA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size547
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10814.770.1prot_H-canaliculatus_F_contig10814.770.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10814 600..3045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928748.0191364-CDS-H-canaliculatus_F_contig10814:599..8231622928748.0191364-CDS-H-canaliculatus_F_contig10814:599..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 600..823 -
1696845549.1856225-CDS-H-canaliculatus_F_contig10814:599..8231696845549.1856225-CDS-H-canaliculatus_F_contig10814:599..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 600..823 -
1622928748.0386326-CDS-H-canaliculatus_F_contig10814:1632..17401622928748.0386326-CDS-H-canaliculatus_F_contig10814:1632..1740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1633..1740 -
1696845549.1999905-CDS-H-canaliculatus_F_contig10814:1632..17401696845549.1999905-CDS-H-canaliculatus_F_contig10814:1632..1740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1633..1740 -
1622928748.0562763-CDS-H-canaliculatus_F_contig10814:1756..17881622928748.0562763-CDS-H-canaliculatus_F_contig10814:1756..1788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1757..1788 -
1696845549.2109559-CDS-H-canaliculatus_F_contig10814:1756..17881696845549.2109559-CDS-H-canaliculatus_F_contig10814:1756..1788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1757..1788 -
1622928748.073438-CDS-H-canaliculatus_F_contig10814:1951..19861622928748.073438-CDS-H-canaliculatus_F_contig10814:1951..1986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1952..1986 -
1696845549.219918-CDS-H-canaliculatus_F_contig10814:1951..19861696845549.219918-CDS-H-canaliculatus_F_contig10814:1951..1986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 1952..1986 -
1622928748.089066-CDS-H-canaliculatus_F_contig10814:2901..30451622928748.089066-CDS-H-canaliculatus_F_contig10814:2901..3045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 2902..3045 -
1696845549.2280633-CDS-H-canaliculatus_F_contig10814:2901..30451696845549.2280633-CDS-H-canaliculatus_F_contig10814:2901..3045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10814 2902..3045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10814.770.1

>prot_H-canaliculatus_F_contig10814.770.1 ID=prot_H-canaliculatus_F_contig10814.770.1|Name=mRNA_H-canaliculatus_F_contig10814.770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=181bp
GVEARPTSNSGVKGGGAPGLRRRGGALSGSGFCVSKPREKELEGDEAADE
RNRWSGTRSWSTSNGNDNSSTSSSSGAGSTTNPAAAAAAVGSTTLCVRDI
ARTIWREGNRSLSDSARSLHGSWFTALTLCCSRDSAVSTAAAGVAASANG
SGAAFRGNGSHPTVDYRHAAGRGGSGSGASA
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mRNA from alignment at H-canaliculatus_F_contig10814:598..3045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10814.770.1 ID=mRNA_H-canaliculatus_F_contig10814.770.1|Name=mRNA_H-canaliculatus_F_contig10814.770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2448bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10814:598..3045- (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCGAGGCACGACCAACCAGCAACAGCGGCGTGAAAGGTGGAGGCGC
GCCGGGGCTTCGGCGGCGGGGCGGTGCCTTGTCCGGATCGGGGTTTTGCG
TCTCGAAGCCAAGGGAGAAGGAGTTGGAGGGCGACGAGGCGGCGGTGAGG
GGAGGGGGTCAAGGCGGCCGGCGGGGTGTGTGGTGTTCGTCCCCCTTCTT
TTTTTTTCTCCGTGCGTTTGTTTTTTCTTCTGTATTTTGTTGTGAACACT
GGTCGCGCGCAACAGCTGGCTGCTGGCAAGGCGTCGACTCCACGGAGCGT
ATCTGTGTCCAGCGCTTTGCCTGTTGTCGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTCGAGAGCGAGATGATTGATCCGAGGGGAGACTGGTCT
CGAGTGCGGTCGACGCCCCTATCAGGACGCGCGCGTACACGCTGCTGCTG
GCGGCGCGCTGCTGTTGCGTCAACGCACCGGCGCGCCTCCGCGCTTTGCT
GCACGTATTGGTTAGGCCGCTGTTAGGCCGCTGGAGTGTCCCGAGTCTCG
TCGTGACTCCCGTCGCGAAGCGATGCGAGCGATCGCGACGCACGACTTGC
GGCGCGTAGGAGCTAGGAAGTGCGCTTTATCTCCATTCTCTCGGGTAGGG
CGTCTTCTAGGAGACAAACCGCCAGCGCTTTTTCCGGCTATTTTCGCTCT
GCCTCTGGTTGGATCACGGTCGATCGTCGCGCATAACGCGCGTTGCACGC
GTGAACTAGTTCGTCATGTTTTCTGACCAAAACACGAGAGGTCCGTAAAA
GAGCCGATTTTTTCTCGCCCCAGCTCCGCTTGCGTCAACCTTGCTTTGAA
GCTGCTCAAACGAATAAAACAGAGTGAAACATCCGACCCACTGACCCCTG
GCTGCATGGAAATCAACACAAGCCTCCTGAGGCGGCAGCCGAGACGTGAC
CCTAAAAGTATTATTCCTTCGGTCAGTGTTGTTGACACTACATTCAAACG
ATATACGGAGTATATATGTTTTTCCCACCGTGTGAAACGACATGGCAACG
CAACACCAGGACGAGCGCAACCGATGGTCCGGGACGAGGTCCTGGTCGAC
GTGACACACACATCCCTCGGCCAGCCGGGAAGCGGAGAGGAACAAGGAGG
GCTCGACCTCTCCGACCTCCGGCAGCGAGGGGAGCGGCGAGGCACAGGCG
AAGGAGGCGGGGCGGCAGCGGCAGCGGCAGCAGCGGTTAGAAAGGGGCAA
GGGAAAGGTCGACGAGCAACGGCAACGACAACAGCAGCAGCAGCAGCAGC
AGCAGCATCATCATCATCGGGCGCGGGATCGACGACGAATCCCGCGGCGG
CCGCTGCCGCGGTTGGTTCGACGACGCTGTGCGTCCGGGACATCGCGAGG
ACCATCTGGCGAGGTGCGTCGTGCCCTGCGCGCTCCGTGTTCTCCGTTTC
TACGGTAAAGGAGAAAGAAGCAAGAACGCGCGAGGGCGGGACGGTCCTCG
CTCACCATCCCGGGGACTGGGCTCGGGAGCGTTTTTTTTTATTTATTTCG
AGACGGCCGCGCCGCGGCGAAAACATTGAAAGAGGGGTAGAAGGCTGTGG
TGAGCTCGTTTGATCTGTCCATGCTCTTGCGGTGGCATGGTCCTCCGGAC
ATCGTGACCGGCTGCGAGGCTTGGGGCCTGCCTCCCGCGCGGGGTCGTTG
CGGGACAAGGTGGTGGAGACTCCTGGAGGAACGCTGCTGTGTGTGTTGTT
CTGTAGCGTCTTGGGGGTGGAAATCCGACCGCCATCGCCGAAGAGCTTGG
GAGGGCTTGCCTCGGGAATACAGAGAGTCAATGGCACGGAAGGAAACCTG
TACCCTCTTGCGAGACGTGTCTCAGCAGGGGTTTCGGGAGGTGTGTCGTG
TTGAACACCGTACAGCCTTTTTCGCTTCCATTGGCGACGTATTGTTACCG
GGAGCCGCCGCGGTCTCGGCGGCTCTTGCCTGGCGCGCAGCGCGGTTGTG
GATAGGGAGGGAGGCGCGGGAGTGCCTTCGCTACCGCAGAGCGCTTTCCG
AGAGTATTGATGCTCGCGGTGGTCGGAAGATAGCGCCCAGCAAGCCCGCA
CGCGCCTTTGTTTCGTCTCTGCTCCCCACACAGAAACATGACGTCCCGAC
TTGCAACTAAACCCTCCGCCCTTCTCCCTCGCACCGGTCTCGGTCCCCCG
GCTCTCCCGTTCTCACCCGCAGAGGGCAACAGGAGCTTGTCCGACTCAGC
CAGGTCCCTGCATGGTTCCTGGTTCACCGCCCTTACCCTGTGCTGCAGTC
GAGACTCAGCTGTTTCCACCGCCGCCGCTGGTGTTGCTGCTAGTGCGAAT
GGTAGCGGCGCGGCCTTCCGCGGCAACGGAAGTCACCCCACGGTCGATTA
TCGCCACGCCGCCGGGAGGGGCGGCTCCGGTAGCGGAGCATCAGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10814:598..3045-

>mRNA_H-canaliculatus_F_contig10814.770.1 ID=mRNA_H-canaliculatus_F_contig10814.770.1|Name=mRNA_H-canaliculatus_F_contig10814.770.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1086bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10814:598..3045- (Hapterophycus canaliculatus Oshoro5f female)
GGGGTCGAGGCACGACCAACCAGCAACAGCGGCGTGAAAGGTGGAGGCGC
GCCGGGGCTTCGGCGGCGGGGCGGTGCCTTGTCCGGATCGGGGTTTTGCG
TCTCGAAGCCAAGGGAGAAGGAGTTGGAGGGCGACGAGGCGGCGGGGGTC
GAGGCACGACCAACCAGCAACAGCGGCGTGAAAGGTGGAGGCGCGCCGGG
GCTTCGGCGGCGGGGCGGTGCCTTGTCCGGATCGGGGTTTTGCGTCTCGA
AGCCAAGGGAGAAGGAGTTGGAGGGCGACGAGGCGGCGGACGAGCGCAAC
CGATGGTCCGGGACGAGGTCCTGGACGAGCGCAACCGATGGTCCGGGACG
AGGTCCTGGTCGACGAGCAACGGCAACGACAACAGCAGCAGTCGACGAGC
AACGGCAACGACAACAGCAGCACATCATCATCATCGGGCGCGGGATCGAC
GACGAATCCCGCGGCGGCCGCTGCCGCGGTTGGTTCGACGACGCTGTGCG
TCCGGGACATCGCGAGGACCATCTGGCGAGCATCATCATCATCGGGCGCG
GGATCGACGACGAATCCCGCGGCGGCCGCTGCCGCGGTTGGTTCGACGAC
GCTGTGCGTCCGGGACATCGCGAGGACCATCTGGCGAGAGGGCAACAGGA
GCTTGTCCGACTCAGCCAGGTCCCTGCATGGTTCCTGGTTCACCGCCCTT
ACCCTGTGCTGCAGTCGAGACTCAGCTGTTTCCACCGCCGCCGCTGGTGT
TGCTGCTAGTGCGAATGGTAGCGGCGCGGCCTTCCGCGGCAACGGAAGTC
ACCCCACGGTCGATTATCGCCACGCCGCCGGGAGGGGCGGCTCCGGTAGC
GGAGCATCAGCAAGGGCAACAGGAGCTTGTCCGACTCAGCCAGGTCCCTG
CATGGTTCCTGGTTCACCGCCCTTACCCTGTGCTGCAGTCGAGACTCAGC
TGTTTCCACCGCCGCCGCTGGTGTTGCTGCTAGTGCGAATGGTAGCGGCG
CGGCCTTCCGCGGCAACGGAAGTCACCCCACGGTCGATTATCGCCACGCC
GCCGGGAGGGGCGGCTCCGGTAGCGGAGCATCAGCA
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