mRNA_H-canaliculatus_F_contig10812.768.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10812.768.1
Unique NamemRNA_H-canaliculatus_F_contig10812.768.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10812.768.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 9.570e-46
Identity = 99/177 (55.93%), Postives = 114/177 (64.41%), Query Frame = 1 
Query:   16 ILSTEEVAWLRRGLELPMQATMGSPQAALMKKADLQRMVSFLERRGKVLRKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKSGSAGKLTRRPEGWSERLSPAAASALETVWEPDIEWPIMQTPLLAWDLTTLLVAGVSMARSWSGRAGVARAACLARLCQALLQPELCLRGPGG 546
            +LS EE  W+RRGLELPMQA MG+ Q  L K+AD  R+ SF  R+   L++                                +  +AG L  +   WSERLSP +ASALE+VWEPD  WP+MQTPLL+WDLTTLLV  VSMARSWS RAGVARA CLARLCQALLQPELCLRGPGG
Sbjct: 1012 VLSPEEATWIRRGLELPMQA-MGNTQPDL-KEADKGRLESFRLRQAYALKRPRQAARECF-----------------------EEAAAGGLASKTSSWSERLSPESASALESVWEPDAVWPLMQTPLLSWDLTTLLVGSVSMARSWSNRAGVARAVCLARLCQALLQPELCLRGPGG 1163
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BLAST of mRNA_H-canaliculatus_F_contig10812.768.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.570e-43
Identity = 96/177 (54.24%), Postives = 112/177 (63.28%), Query Frame = 1 
Query:   16 ILSTEEVAWLRRGLELPMQATMGSPQAALMKKADLQRMVSFLERRGKVLRKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKSGSAGKLTRRPEGWSERLSPAAASALETVWEPDIEWPIMQTPLLAWDLTTLLVAGVSMARSWSGRAGVARAACLARLCQALLQPELCLRGPGG 546
            ILS EE  W+RR LELPMQA MG+ Q  L K+AD  R+ SF  R+   L++                                +  +AG  T +   WSERLSP +ASALE+VWE D  WP+MQ P+L+WDLTTL+V GVSMARSWS RAGVARA CLARLCQALLQPELCLRGPGG
Sbjct: 1886 ILSPEEATWMRRALELPMQA-MGNTQPDL-KEADKGRLESFRLRQAYALKRPRQAARECF-----------------------EEAAAGGATSKTSSWSERLSPESASALESVWESDAVWPLMQIPILSWDLTTLVVGGVSMARSWSNRAGVARAVCLARLCQALLQPELCLRGPGG 2037
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BLAST of mRNA_H-canaliculatus_F_contig10812.768.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.250e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  370 EWPIMQTPLLAWDLTTLLVAGVSMARSWSGRAGVARAACLARLCQALLQPELCLRG 537
            +WP++Q PLLAWDL+TL  A  ++  S   R    RA CLARL Q  +QPE CL G
Sbjct: 1868 QWPVLQVPLLAWDLSTLAAALATLVHSAEQRRAAVRAVCLARLAQLCVQPEFCLLG 1923
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10812.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3D4_ECTSI9.570e-4655.93E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5K8R4_9PHAE2.570e-4354.24E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A836CB31_9STRA2.250e-751.79E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10812contigH-canaliculatus_F_contig10812:774..2936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D7G3D4
KEGG koko:K10625,ko:K10626,ko:K11978
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size591
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10812.768.1prot_H-canaliculatus_F_contig10812.768.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10812 774..2934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928747.7633219-CDS-H-canaliculatus_F_contig10812:773..8451622928747.7633219-CDS-H-canaliculatus_F_contig10812:773..845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 774..845 +
1696845549.096754-CDS-H-canaliculatus_F_contig10812:773..8451696845549.096754-CDS-H-canaliculatus_F_contig10812:773..845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 774..845 +
1622928747.7805364-CDS-H-canaliculatus_F_contig10812:1267..15101622928747.7805364-CDS-H-canaliculatus_F_contig10812:1267..1510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 1268..1510 +
1696845549.114565-CDS-H-canaliculatus_F_contig10812:1267..15101696845549.114565-CDS-H-canaliculatus_F_contig10812:1267..1510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 1268..1510 +
1622928747.800036-CDS-H-canaliculatus_F_contig10812:2126..21981622928747.800036-CDS-H-canaliculatus_F_contig10812:2126..2198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 2127..2198 +
1696845549.1283472-CDS-H-canaliculatus_F_contig10812:2126..21981696845549.1283472-CDS-H-canaliculatus_F_contig10812:2126..2198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 2127..2198 +
1622928747.8312466-CDS-H-canaliculatus_F_contig10812:2733..29341622928747.8312466-CDS-H-canaliculatus_F_contig10812:2733..2934Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 2734..2934 +
1696845549.139675-CDS-H-canaliculatus_F_contig10812:2733..29341696845549.139675-CDS-H-canaliculatus_F_contig10812:2733..2934Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10812 2734..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10812.768.1

>prot_H-canaliculatus_F_contig10812.768.1 ID=prot_H-canaliculatus_F_contig10812.768.1|Name=mRNA_H-canaliculatus_F_contig10812.768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
RQTVSILSTEEVAWLRRGLELPMQATMGSPQAALMKKADLQRMVSFLERR
GKVLRKAAAAARECFQQNQEAPPPSVTTAAGGGGGGKGKSGSAGKLTRRP
EGWSERLSPAAASALETVWEPDIEWPIMQTPLLAWDLTTLLVAGVSMARS
WSGRAGVARAACLARLCQALLQPELCLRGPGGEAAAAAVAAAGGSR
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mRNA from alignment at H-canaliculatus_F_contig10812:774..2936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10812.768.1 ID=mRNA_H-canaliculatus_F_contig10812.768.1|Name=mRNA_H-canaliculatus_F_contig10812.768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2163bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10812:774..2936+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCAGACCGTCTCCATCCTGTCCACTGAGGAGGTCGCCTGGCTCCGGCG
AGGCTTGGAGCTACCCATGCAGGTACGATGCCGGATGATTCACGGGCCGG
TGGAGGGAATCACGTGAAAATAATTTGGACGCGCGTTGCACAACGCGGGC
CCGTCTGCGCAAAGCAGACGGTAACGGTGACGACATCCGCCGTACACGGT
GCGGAATACGGAACGATGCACGGAGGGTATATGAGGGACGTTGTCTGAGT
GGAACGAGACGTGTCTGTAGACAGGGCGGTGGTGGAACCCGAGCAGCGCG
CGAGGGCCACGCTGACGGTGGCCGCCGCGGGCAGATGCAGCAGTAGGTCC
AAGCCAAGGCTGCGGTGGCCCCTTCCGAACCGAAACCGCCGCAATGAGGA
CGGCAACACCAACGCCACCACCCTAACGACCACCTTCACCACCACCTCCG
TTGACGAAAACGCTGGCTACGACGTCGGTGACGACTAACGACAGGCCACG
ATGGGGAGCCCGCAGGCTGCTCTCATGAAGAAGGCAGATCTGCAGCGCAT
GGTCTCCTTCCTCGAGAGGCGGGGAAAGGTCCTCCGGAAGGCGGCCGCCG
CGGCTCGCGAGTGCTTCCAGCAGAACCAGGAAGCGCCGCCGCCATCTGTG
ACTACGGCGGCGGGTGGTGGCGGCGGCGGCAAGGGGAAGTCGGGTTCGGC
AGGGAAGCTGACAAGAAGGCCGGAAGGGTGGAGCGAGGTGTGTGAGGAGT
GAGGAGGAGTGGATGTAGGAGCTGGGGTGGGGTCGGACTGGGGGCCCCGT
GAATGGGTGTAGGCGCGCGAAGAGGTCGGATTAGGGGGCCCGTGCTGTTT
CTCGTCGGACGCGCTCGGCGTCGGCCTTTGGCTGTGGGCCGCTGCTGGTG
CCGCCGCTGCAGCTGCCATTGATACCAAGTCGCTGCCCCGCGTGCTGCTG
TCGGAGTGTGTGCGGGGCTGCCACGAAGTGGTGCCATCTCGTCCTCTAGT
CTCGCCTCGCCCCGACCGCAGCCTTTTGACGTGCTGTACTCGTCGCCGTG
CACGGAACGAATCTTGGCGTTTTTTGGTGAAAATCCCAAGCAAGGCGTTT
CTCCTTTCTGTGCGGGATTGAGAGCAAAAGAGAGGTGCGCGCTCCCAACT
GCAGGCGTTCTAGAGAAGTCTCACGACGTTTATTTTCATACAAGCAATGG
AAGACATTTTGAGGCCATGGTTCCCACGCTACAGTACCTCTCCCGGTTTT
CGATTTCCGTCCGGTGCGCGCTGTATGCCTCGTCGGGCGCGTTGCGTCCG
TTTTTTTTCGTGCCTTGGGTCTCGCTCGGCGTTGACGGTGTCGACGGTGG
CAGCGGCTTTCCCCTGCAGCGGCTTCGGCGCTCGAGACCGTGTGGGAGCC
GGACATCGAGTGGCCGATCATGCAGGTGCGTCGGCGCGAGGGGCCCCAGC
GTTCGGGAGGAACAGATCGCTCGTGTGTGGTTAGTGCCGTCTGTCGAACC
AGGCAAGCAAGGCCGAGAGTTGCGCAGGTGTATGGCTGTGCTTGTCCAGG
AAGGCGGAAGGCAACCTCGGCTTGATACGGCCTTCCGCTTCTCGTCCGCC
CTCCCGCCCCTTTTTTCGCATCGAGCTCTTCGCGAAGCGCTCCCGATCGG
TGCCCTTAAGTCAACACACCAGACAGCCAGGTAGCCGGACCACGGCGTTC
GGCCTTCCATTCTCTCTCCCCCTCCGTGCGTTCGTCACGAAAAAATAACC
AACGATACGACAAAATCACCTTCACCGACACTTTTCATGCCGGTGTTTAG
CTTCGCATCATATGTCGATTATCGACACCGCCAACGCCAACGCTGACAAC
ACCAAGCAACAGCAACAACACACATTGCCAACGCCAACGCTGACAACACC
AAGCAACAGCAACAACACCAAGCAACAGCACCAACCCCTACGCCGACACC
ACCACCGCAGACTCCTCTCCTGGCGTGGGACCTTACGACCCTCCTCGTGG
CGGGGGTGAGCATGGCCCGCTCCTGGTCCGGCAGGGCGGGGGTCGCTCGC
GCCGCCTGCCTCGCGAGGCTCTGCCAAGCGCTGCTGCAACCGGAGCTGTG
CCTGCGCGGGCCGGGCGGCGAAGCGGCGGCGGCTGCGGTAGCGGCGGCGG
GGGGGAGCAGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10812:774..2936+

>mRNA_H-canaliculatus_F_contig10812.768.1 ID=mRNA_H-canaliculatus_F_contig10812.768.1|Name=mRNA_H-canaliculatus_F_contig10812.768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10812:774..2936+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCAGACCGTCTCCATCCTGTCCACTGAGGAGGTCGCCTGGCTCCGGCG
AGGCTTGGAGCTACCCATGCAGCGGCAGACCGTCTCCATCCTGTCCACTG
AGGAGGTCGCCTGGCTCCGGCGAGGCTTGGAGCTACCCATGCAGGCCACG
ATGGGGAGCCCGCAGGCTGCTCTCATGAAGAAGGCAGATCTGCAGCGCAT
GGTCTCCTTCCTCGAGAGGCGGGGAAAGGTCCTCCGGAAGGCGGCCGCCG
CGGCTCGCGAGTGCTTCCAGCAGAACCAGGAAGCGCCGCCGCCATCTGTG
ACTACGGCGGCGGGTGGTGGCGGCGGCGGCAAGGGGAAGTCGGGTTCGGC
AGGGAAGCTGACAAGAAGGCCGGAAGGGTGGAGCGAGGCCACGATGGGGA
GCCCGCAGGCTGCTCTCATGAAGAAGGCAGATCTGCAGCGCATGGTCTCC
TTCCTCGAGAGGCGGGGAAAGGTCCTCCGGAAGGCGGCCGCCGCGGCTCG
CGAGTGCTTCCAGCAGAACCAGGAAGCGCCGCCGCCATCTGTGACTACGG
CGGCGGGTGGTGGCGGCGGCGGCAAGGGGAAGTCGGGTTCGGCAGGGAAG
CTGACAAGAAGGCCGGAAGGGTGGAGCGAGCGGCTTTCCCCTGCAGCGGC
TTCGGCGCTCGAGACCGTGTGGGAGCCGGACATCGAGTGGCCGATCATGC
AGCGGCTTTCCCCTGCAGCGGCTTCGGCGCTCGAGACCGTGTGGGAGCCG
GACATCGAGTGGCCGATCATGCAGACTCCTCTCCTGGCGTGGGACCTTAC
GACCCTCCTCGTGGCGGGGGTGAGCATGGCCCGCTCCTGGTCCGGCAGGG
CGGGGGTCGCTCGCGCCGCCTGCCTCGCGAGGCTCTGCCAAGCGCTGCTG
CAACCGGAGCTGTGCCTGCGCGGGCCGGGCGGCGAAGCGGCGGCGGCTGC
GGTAGCGGCGGCGGGGGGGAGCAGGACTCCTCTCCTGGCGTGGGACCTTA
CGACCCTCCTCGTGGCGGGGGTGAGCATGGCCCGCTCCTGGTCCGGCAGG
GCGGGGGTCGCTCGCGCCGCCTGCCTCGCGAGGCTCTGCCAAGCGCTGCT
GCAACCGGAGCTGTGCCTGCGCGGGCCGGGCGGCGAAGCGGCGGCGGCTG
CGGTAGCGGCGGCGGGGGGGAGCAGG
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