mRNA_H-canaliculatus_F_contig1081.767.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1081.767.1
Unique NamemRNA_H-canaliculatus_F_contig1081.767.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.630e-34
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:  223 QQEHQQHRLRRSPAPVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            +Q+ Q+  L  S  PVAIVGAGPAGLTLS LLSKFGVPS+LLERA  LPTHPQAHFINLRSMEIMRHAF GLDR VLEM PPQEEWR
Sbjct:   32 RQQGQEEGLDAS-TPVAIVGAGPAGLTLSTLLSKFGVPSILLERAPELPTHPQAHFINLRSMEIMRHAFGGLDRKVLEMCPPQEEWR 117
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A836CK39_9STRA (FAD binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK39_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.550e-21
Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  265 PVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEW 480
            PV I GAGP GLTLSALLS+ GV SVLLE+   L  HPQAHFINLRSMEI RH   GLD++V   SPP+ +W
Sbjct:    8 PVVICGAGPTGLTLSALLSRAGVQSVLLEKEQDLSDHPQAHFINLRSMEIFRHCLGGLDKSVFAASPPKAQW 79
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A7S3W578_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W578_EMIHU)

HSP 1 Score: 85.5 bits (210), Expect = 6.580e-18
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  262 APVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            APV I G GP GL  S LLS+FGVPS+LLER  A   HP+AH IN RSME+ R    GLD+ V  ++PP  EWR
Sbjct:   20 APVLIAGGGPVGLYTSVLLSRFGVPSILLERQRAGIPHPRAHLINTRSMELFREV--GLDQRVESLAPPMREWR 91
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A7S4C7W7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C7W7_9EUGL)

HSP 1 Score: 88.2 bits (217), Expect = 1.750e-17
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  268 VAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            VAI GAGP GLTLS +LSK+G+   +++RA     HPQAH+IN R+MEI+RHA DGL   + ++S P E WR
Sbjct:   29 VAIAGAGPVGLTLSLILSKYGIEHTIMDRASGPTNHPQAHYINARTMEIIRHATDGLADHIAKLSEPIEPWR 100
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A2V0P2A8_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2A8_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 1.950e-17
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  265 PVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            PV IVGAGP GL LS+LLS +GV  V+LERA     HPQAHFIN R+ME++RH   GL   V    PP E+WR
Sbjct:   52 PVVIVGAGPTGLVLSSLLSSYGVRHVVLERAPEPTRHPQAHFINHRTMEVLRHLGGGLSPAVAAAGPPLEQWR 124
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A2K1IC09_PHYPA (FAD_binding_3 domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IC09_PHYPA)

HSP 1 Score: 88.2 bits (217), Expect = 2.570e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:  259 PAPVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            P PV IVGAGP GLTLS LLS++GVPS+L+++   LP HPQAHF+N R+MEI R   +GL   +    PP ++WR
Sbjct:   28 PLPVLIVGAGPVGLTLSILLSQYGVPSLLVDKRKRLPEHPQAHFLNNRTMEIFRK-MEGLTAEIETKQPPVDQWR 101
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: W7TPL4_9STRA (Aromatic-ring hydroxylase-like protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.780e-17
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:  262 APVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFD-GLDRTVLEMSPPQEEWR 483
            APV I GAGP GLTLSALLS+ GV +V+ E+   L  HPQAHFIN R+MEI RHA+   L R + E+ P Q  WR
Sbjct:   10 APVLIAGAGPVGLTLSALLSRCGVQNVIFEKNAELSQHPQAHFINCRTMEIFRHAYSPNLMRRITEIVPDQSCWR 84
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BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: A0A2G3ARF5_CAPCH (FAD_binding_3 domain-containing protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3ARF5_CAPCH)

HSP 1 Score: 81.3 bits (199), Expect = 1.270e-16
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  265 PVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            PV I+GAGP GL LS LL+K GV   +LE+   L  HPQAHFIN RSME+ R   DGL   +L   PP E WR
Sbjct:   28 PVLIIGAGPVGLVLSILLTKLGVRCAILEKNKVLSAHPQAHFINNRSMEVFRK-LDGLGDEILRSQPPVEFWR 99
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: UPI001FB17B78 (3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase 1-like n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB17B78)

HSP 1 Score: 81.3 bits (199), Expect = 2.000e-16
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  265 PVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            PV I+GAGP GL LS LL+K GV   +LE+   L  HPQAHFIN RSME+ R   DGL   +L   PP E WR
Sbjct:   49 PVLIIGAGPVGLVLSILLTKLGVRCAILEKNKVLSAHPQAHFINNRSMEVFRK-LDGLGDEILRSQPPVEFWR 120
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Match: R1DXN3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DXN3_EMIHU)

HSP 1 Score: 85.5 bits (210), Expect = 2.190e-16
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  262 APVAIVGAGPAGLTLSALLSKFGVPSVLLERAGALPTHPQAHFINLRSMEIMRHAFDGLDRTVLEMSPPQEEWR 483
            APV I G GP GL  S LLS+FGVPS+LLER  A   HP+AH IN RSME+ R    GLD+ V  ++PP  EWR
Sbjct:    8 APVLIAGGGPVGLYTSVLLSRFGVPSILLERQRAGIPHPRAHLINTRSMELFREV--GLDQRVESLAPPMREWR 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1081.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FML8_ECTSI1.630e-3480.46Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A836CK39_9STRA1.550e-2166.67FAD binding domain-containing protein n=1 Tax=Trib... [more]
A0A7S3W578_EMIHU6.580e-1858.11Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4C7W7_9EUGL1.750e-1755.56Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A2V0P2A8_9CHLO1.950e-1758.90Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2K1IC09_PHYPA2.570e-1756.00FAD_binding_3 domain-containing protein n=3 Tax=Ph... [more]
W7TPL4_9STRA8.780e-1758.67Aromatic-ring hydroxylase-like protein n=3 Tax=Nan... [more]
A0A2G3ARF5_CAPCH1.270e-1656.16FAD_binding_3 domain-containing protein n=1 Tax=Ca... [more]
UPI001FB17B782.000e-1656.163-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic a... [more]
R1DXN3_EMIHU2.190e-1658.11Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1081contigH-canaliculatus_F_contig1081:29453..29946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size483
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1081.767.1prot_H-canaliculatus_F_contig1081.767.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1081 29566..29906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928746.9369924-UTR-H-canaliculatus_F_contig1081:29452..295651622928746.9369924-UTR-H-canaliculatus_F_contig1081:29452..29565Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1081 29453..29565 +
1696845548.6833456-UTR-H-canaliculatus_F_contig1081:29452..295651696845548.6833456-UTR-H-canaliculatus_F_contig1081:29452..29565Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1081 29453..29565 +
1622928746.9782374-UTR-H-canaliculatus_F_contig1081:29906..299461622928746.9782374-UTR-H-canaliculatus_F_contig1081:29906..29946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1081 29907..29946 +
1696845548.7091365-UTR-H-canaliculatus_F_contig1081:29906..299461696845548.7091365-UTR-H-canaliculatus_F_contig1081:29906..29946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1081 29907..29946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928746.953331-CDS-H-canaliculatus_F_contig1081:29565..296741622928746.953331-CDS-H-canaliculatus_F_contig1081:29565..29674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1081 29566..29674 +
1696845548.691551-CDS-H-canaliculatus_F_contig1081:29565..296741696845548.691551-CDS-H-canaliculatus_F_contig1081:29565..29674Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1081 29566..29674 +
1622928746.9665139-CDS-H-canaliculatus_F_contig1081:29685..299061622928746.9665139-CDS-H-canaliculatus_F_contig1081:29685..29906Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1081 29686..29906 +
1696845548.7000492-CDS-H-canaliculatus_F_contig1081:29685..299061696845548.7000492-CDS-H-canaliculatus_F_contig1081:29685..29906Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1081 29686..29906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1081.767.1

>prot_H-canaliculatus_F_contig1081.767.1 ID=prot_H-canaliculatus_F_contig1081.767.1|Name=mRNA_H-canaliculatus_F_contig1081.767.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MLERCMALGGGLRKPASALSAVGLKRPRPLSHYSTAPTRAPTAPATSFTC
SGGYRWRWPSRSNSVCSALEVWGSLRLAREGWSAAYTPPGPLHQLAQHGN
HAACLRRTG*
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mRNA from alignment at H-canaliculatus_F_contig1081:29453..29946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1081.767.1 ID=mRNA_H-canaliculatus_F_contig1081.767.1|Name=mRNA_H-canaliculatus_F_contig1081.767.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1081:29453..29946+ (Hapterophycus canaliculatus Oshoro5f female)
GTTCGTGTTATTCGTGTTCGTGTTCTCGTTCTCATCGCGACACGAAGAGT
ACATGCGAAGTTGTTTGCTCTGACAACGTAACCGCTTAGTTCCTGTCCAG
CCGGAGTATTGCCATGTTGGAGCGATGCATGGCTCTAGGTGGCGGTCTGC
GGAAGCCGGCCTCTGCTCTGAGTGCTGTTGGACTGAAACGTCCACGGCCC
CTTAGTCACTATTCGACCGCACGTCAGGAACAGCAACAAGAGCACCAACA
GCACCGGCTACGTCGTTCACCTGCTCCGGTGGCTATCGTTGGCGCTGGCC
CAGCAGGTCTAACTCTGTCTGCTCTGCTCTCGAAGTTTGGGGTTCCCTCC
GTCTTGCTAGAGAGGGCTGGAGCGCTGCCTACACACCCCCAGGCCCACTT
CATCAACTTGCGCAGCATGGAAATCATGCGGCATGCCTTCGACGGACTGG
ATAGGACTGTCCTGGAAATGTCACCGCCGCAAGAGGAGTGGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1081:29453..29946+

>mRNA_H-canaliculatus_F_contig1081.767.1 ID=mRNA_H-canaliculatus_F_contig1081.767.1|Name=mRNA_H-canaliculatus_F_contig1081.767.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1081:29453..29946+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGGAGCGATGCATGGCTCTAGGTGGCGGTCTGCGGAAGCCGGCCTC
TGCTCTGAGTGCTGTTGGACTGAAACGTCCACGGCCCCTTAGTCACTATT
CGACCGCACATGTTGGAGCGATGCATGGCTCTAGGTGGCGGTCTGCGGAA
GCCGGCCTCTGCTCTGAGTGCTGTTGGACTGAAACGTCCACGGCCCCTTA
GTCACTATTCGACCGCACCAACAAGAGCACCAACAGCACCGGCTACGTCG
TTCACCTGCTCCGGTGGCTATCGTTGGCGCTGGCCCAGCAGGTCTAACTC
TGTCTGCTCTGCTCTCGAAGTTTGGGGTTCCCTCCGTCTTGCTAGAGAGG
GCTGGAGCGCTGCCTACACACCCCCAGGCCCACTTCATCAACTTGCGCAG
CATGGAAATCATGCGGCATGCCTTCGACGGACTGGATAGCAACAAGAGCA
CCAACAGCACCGGCTACGTCGTTCACCTGCTCCGGTGGCTATCGTTGGCG
CTGGCCCAGCAGGTCTAACTCTGTCTGCTCTGCTCTCGAAGTTTGGGGTT
CCCTCCGTCTTGCTAGAGAGGGCTGGAGCGCTGCCTACACACCCCCAGGC
CCACTTCATCAACTTGCGCAGCATGGAAATCATGCGGCATGCCTTCGACG
GACTGGATAG
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