mRNA_H-canaliculatus_F_contig10803.761.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10803.761.1
Unique NamemRNA_H-canaliculatus_F_contig10803.761.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10803.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10803contigH-canaliculatus_F_contig10803:422..3123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1118
Cds size1116
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10803.761.1prot_H-canaliculatus_F_contig10803.761.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10803 423..3123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928746.356408-CDS-H-canaliculatus_F_contig10803:422..6801622928746.356408-CDS-H-canaliculatus_F_contig10803:422..680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 423..680 -
1696845548.365471-CDS-H-canaliculatus_F_contig10803:422..6801696845548.365471-CDS-H-canaliculatus_F_contig10803:422..680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 423..680 -
1622928746.371816-CDS-H-canaliculatus_F_contig10803:1195..15311622928746.371816-CDS-H-canaliculatus_F_contig10803:1195..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 1196..1531 -
1696845548.377215-CDS-H-canaliculatus_F_contig10803:1195..15311696845548.377215-CDS-H-canaliculatus_F_contig10803:1195..1531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 1196..1531 -
1622928746.3842952-CDS-H-canaliculatus_F_contig10803:2105..22271622928746.3842952-CDS-H-canaliculatus_F_contig10803:2105..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2106..2227 -
1696845548.3858395-CDS-H-canaliculatus_F_contig10803:2105..22271696845548.3858395-CDS-H-canaliculatus_F_contig10803:2105..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2106..2227 -
1622928746.3989518-CDS-H-canaliculatus_F_contig10803:2461..25521622928746.3989518-CDS-H-canaliculatus_F_contig10803:2461..2552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2462..2552 -
1696845548.3952408-CDS-H-canaliculatus_F_contig10803:2461..25521696845548.3952408-CDS-H-canaliculatus_F_contig10803:2461..2552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2462..2552 -
1622928746.4211044-CDS-H-canaliculatus_F_contig10803:2814..31231622928746.4211044-CDS-H-canaliculatus_F_contig10803:2814..3123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2815..3123 -
1696845548.4047909-CDS-H-canaliculatus_F_contig10803:2814..31231696845548.4047909-CDS-H-canaliculatus_F_contig10803:2814..3123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10803 2815..3123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10803.761.1

>prot_H-canaliculatus_F_contig10803.761.1 ID=prot_H-canaliculatus_F_contig10803.761.1|Name=mRNA_H-canaliculatus_F_contig10803.761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=372bp
SAGAVDFGTSEAVIAVTSSPMSGGRGTTLAATAAAAEGDATASSDAAPAL
DGAGFPTARRGLAASVHTAAAAVPVDQIVIYRGGAEPTAGASCAAPDDRR
PLQFGPCRPLRLLLDDSTTPSLPNFAFPLGQPVAMAFDVRCFFWAHCSGS
ASLPLATTSSAGVPAGGARAACFEVRLVVRRNRSRITAAAAATFTGIIPG
ISITTASDSAAGSSLPSNSSSIVYSPHVSATAPSVVGVEMTSSAVQKQAE
PAPSREPAANLVNAAGTASPASPTLAAAASAPSPTKGGKGAVSPPTTAVA
AITAAGVLLLPGYDLSGNGDSLGGGRKAEETNVSSAPVSTLFVAEGGVGV
RKMALGTGGGDTSISASIGPTS
back to top

mRNA from alignment at H-canaliculatus_F_contig10803:422..3123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10803.761.1 ID=mRNA_H-canaliculatus_F_contig10803.761.1|Name=mRNA_H-canaliculatus_F_contig10803.761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10803:422..3123- (Hapterophycus canaliculatus Oshoro5f female)
AGCGCAGGGGCTGTGGACTTCGGAACCTCCGAAGCTGTCATCGCCGTTAC
TTCGTCGCCGATGAGCGGAGGGAGAGGAACAACTCTAGCTGCCACTGCCG
CTGCCGCCGAGGGTGATGCTACGGCTTCTTCTGACGCGGCCCCCGCCCTT
GACGGCGCTGGCTTTCCCACGGCGAGGAGAGGACTTGCCGCTTCCGTCCA
CACGGCCGCTGCTGCTGTCCCCGTCGACCAGATTGTGATCTACCGTGGCG
GTGCTGAGCCAACAGCTGGTGCCTCGTGTGCCGCCCCGGACGACCGCCGC
CCTCTACAGGTACAGCGCGCGATTTCGGGTCCTGGTGTTCGTAGTTGTAT
TTCCCTCTAGGCTGTAGCTGCTCCATACTGGTAGTGAGGTGCAAAACGTC
TTGCGTGACCGGTCGCTGTCGAGACACGCTCAAACATCTTCGATGCTGTT
CATCATTCGTACCGCCTCGTCCCGGCGTGTTGGAACCTTGGCGCCTCTGA
TGGTCTGACCGCCTCGTCCGTTGACGTGGTTCTTGTTCTACGCCGACTCC
TCCTCCGTGTCCTTCGTACAGTTTGGGCCATGCCGTCCTCTCCGGCTGTT
GCTGGATGACTCTACCACCCCGAGCCTGCCGAACTTTGCCTTTCCGCTCG
GTCAGCCCGTCGGTGAGCTGGACGCAATCGCGTCTACGGGCGTTGTCGGT
GGTAGCGGTATCCAGAAAGGCGTGTGCAGGGGTAGCGCAATCATGGCAAC
GACCGAGGTGCGGGTGCTGTTGGCTCCTGCACCCCTTGATCGTCCTCTGT
GTCGTGTGTATCATGACGAGAGGTTTCCATCTAGATAGCTGCTCGAGTAA
CGGGTTTCTTTCGCGTGCCGTCACTACTACTGCCACTACGCCGCAGCGAT
GGCATTCGACGTGCGGTGTTTTTTCTGGGCGCACTGCTCGGGCTCGGCGT
CCCTTCCCCTGGCGACCACGTCCTCCGCTGGCGTGCCCGCCGGTGGTGCC
CGTGCGGCATGTTTCGAGGTGAGCCTTAAGCATGGGGTCCCGTAAGACAG
CAGGATGATCATAGTGGTAGGGTTTGCCTCCTCTCCGGTGTCACTAGACG
GGCCAACACCATATGGTAAAGCGTAGGCTATCGCGATGCTGTATCTGAAC
CGCAGTAAGTGGCACAACAGCGCACTGATGGTAGCCTTCATGCTTGTTTC
GATATCCACAGAGAAGATAAGGGCGCTCACCACACGAGTCGAGTCAAGGT
CGAGGTGCTGCAGTTGCAATGTCGCTGTTCAGACGTGTCTTGATCGACAG
CAACGGTCGGAGTCTGTTCCGCAGAACTGAAGATCGTAGTGGAATGGGTG
GTCGAAACTCACGCGCAATATCCAGCAGTGCCTTCAACAACCCTCCGCCC
TGGTCGCACCTGATCTTCGCGGCCAGTTGCTCCCTAATAGACGGGCTTGG
TTCAAGACCAGGTTATCAACCGGCCGCCACGAATGCCGATGCATTTCACA
GCAACCTGATGCCTGGAATATTGCCGACGCTTGCGCTGTCACCCTTCGTC
TGTCCTTGTCCATGACCTGTCTCGATCCTTTGATGCGGTCAGGTGCGGCT
GGTGGTGCGCCGAAACCGTTCCCGTATCACCGCCGCCGCCGCTGCCACAT
TCACCGGCATCATCCCCGGGATCTCCATTACCACCGCCTCGGATTCAGCC
GCCGGCAGCAGCTTACCATCGAACTCCTCCAGCATCGTCTACTCGCCCCA
CGTGTCCGCAACGGCACCGAGCGTCGTGGGTGTTGAGATGACGTCGTCCG
CCGTCCAGAAGCAGGCAGAGCCAGCACCTTCGCGGGAGCCGGCCGCCAAT
CTGGTCAACGCAGCAGGCACCGCTTCACCCGCTTCGCCCACACTGGCTGC
GGCGGCATCAGCGCCGTCTCCCACGAAGGTCGAGTTGGCTGCCACCTCTG
CTGCTGCGGCTGTTGCTCCTGCCGCAGCATCGATGCCGACCCTATTCGAT
GCGGGCAAGATCTCGCCCTTCGACCGCGGCGACCTGCCCGTCACCATCAC
CTCCGTTGGTCATGTTGTAGTCGGAGATGATGGTGATGGGCAGCCGGCGA
TGTGGTTGTTGTTGTGGCCGTTTTTGCTGCTACGGCCATTGATGTTGGCG
GTGGTATGGTGCCCTCGTTTGTGTTCCAGCGGTAGATGGTGTAGTAGGCC
GCAACAGGAAGAGTGTAGACAGCGCTGTAGTAAACGTACGAGGGTCGCAT
TTCACTCGCCAGCATGTTTGATACACCACTGCCTCGAAGCAGCGGTCTCG
CCATGCCTGCCGTATAGAAAAGCTACCGAAACGTGAAAGATGCCGCGTCA
AACGCTCACCTCTTGAAGTGAGGTGATACATGAAGGAGCAGACCGAGTGC
TGATTGCTTCGAACGCCCCTTTTCATTTGCTTGCTGGCTACAGGGCGGGA
AAGGTGCGGTGTCTCCTCCAACAACTGCCGTGGCGGCGATCACCGCAGCC
GGCGTACTGCTGCTCCCCGGTTACGATCTTAGCGGGAACGGTGACAGCTT
GGGCGGTGGCAGAAAGGCAGAAGAGACCAACGTCTCTTCGGCACCGGTAT
CGACACTGTTCGTTGCAGAAGGTGGAGTTGGCGTGCGCAAGATGGCCCTG
GGTACCGGAGGCGGCGACACCAGCATCAGCGCCAGCATCGGCCCCACCAG
CA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10803:422..3123-

>mRNA_H-canaliculatus_F_contig10803.761.1 ID=mRNA_H-canaliculatus_F_contig10803.761.1|Name=mRNA_H-canaliculatus_F_contig10803.761.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2232bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10803:422..3123- (Hapterophycus canaliculatus Oshoro5f female)
AGCGCAGGGGCTGTGGACTTCGGAACCTCCGAAGCTGTCATCGCCGTTAC
TTCGTCGCCGATGAGCGGAGGGAGAGGAACAACTCTAGCTGCCACTGCCG
CTGCCGCCGAGGGTGATGCTACGGCTTCTTCTGACGCGGCCCCCGCCCTT
GACGGCGCTGGCTTTCCCACGGCGAGGAGAGGACTTGCCGCTTCCGTCCA
CACGGCCGCTGCTGCTGTCCCCGTCGACCAGATTGTGATCTACCGTGGCG
GTGCTGAGCCAACAGCTGGTGCCTCGTGTGCCGCCCCGGACGACCGCCGC
CCTCTACAGAGCGCAGGGGCTGTGGACTTCGGAACCTCCGAAGCTGTCAT
CGCCGTTACTTCGTCGCCGATGAGCGGAGGGAGAGGAACAACTCTAGCTG
CCACTGCCGCTGCCGCCGAGGGTGATGCTACGGCTTCTTCTGACGCGGCC
CCCGCCCTTGACGGCGCTGGCTTTCCCACGGCGAGGAGAGGACTTGCCGC
TTCCGTCCACACGGCCGCTGCTGCTGTCCCCGTCGACCAGATTGTGATCT
ACCGTGGCGGTGCTGAGCCAACAGCTGGTGCCTCGTGTGCCGCCCCGGAC
GACCGCCGCCCTCTACAGTTTGGGCCATGCCGTCCTCTCCGGCTGTTGCT
GGATGACTCTACCACCCCGAGCCTGCCGAACTTTGCCTTTCCGCTCGGTC
AGCCCGTCGTTTGGGCCATGCCGTCCTCTCCGGCTGTTGCTGGATGACTC
TACCACCCCGAGCCTGCCGAACTTTGCCTTTCCGCTCGGTCAGCCCGTCG
CGATGGCATTCGACGTGCGGTGTTTTTTCTGGGCGCACTGCTCGGGCTCG
GCGTCCCTTCCCCTGGCGACCACGTCCTCCGCTGGCGTGCCCGCCGGTGG
TGCCCGTGCGGCATGTTTCGAGCGATGGCATTCGACGTGCGGTGTTTTTT
CTGGGCGCACTGCTCGGGCTCGGCGTCCCTTCCCCTGGCGACCACGTCCT
CCGCTGGCGTGCCCGCCGGTGGTGCCCGTGCGGCATGTTTCGAGGTGCGG
CTGGTGGTGCGCCGAAACCGTTCCCGTATCACCGCCGCCGCCGCTGCCAC
ATTCACCGGCATCATCCCCGGGATCTCCATTACCACCGCCTCGGATTCAG
CCGCCGGCAGCAGCTTACCATCGAACTCCTCCAGCATCGTCTACTCGCCC
CACGTGTCCGCAACGGCACCGAGCGTCGTGGGTGTTGAGATGACGTCGTC
CGCCGTCCAGAAGCAGGCAGAGCCAGCACCTTCGCGGGAGCCGGCCGCCA
ATCTGGTCAACGCAGCAGGCACCGCTTCACCCGCTTCGCCCACACTGGCT
GCGGCGGCATCAGCGCCGTCTCCCACGAAGGTGCGGCTGGTGGTGCGCCG
AAACCGTTCCCGTATCACCGCCGCCGCCGCTGCCACATTCACCGGCATCA
TCCCCGGGATCTCCATTACCACCGCCTCGGATTCAGCCGCCGGCAGCAGC
TTACCATCGAACTCCTCCAGCATCGTCTACTCGCCCCACGTGTCCGCAAC
GGCACCGAGCGTCGTGGGTGTTGAGATGACGTCGTCCGCCGTCCAGAAGC
AGGCAGAGCCAGCACCTTCGCGGGAGCCGGCCGCCAATCTGGTCAACGCA
GCAGGCACCGCTTCACCCGCTTCGCCCACACTGGCTGCGGCGGCATCAGC
GCCGTCTCCCACGAAGGGCGGGAAAGGTGCGGTGTCTCCTCCAACAACTG
CCGTGGCGGCGATCACCGCAGCCGGCGTACTGCTGCTCCCCGGTTACGAT
CTTAGCGGGAACGGTGACAGCTTGGGCGGTGGCAGAAAGGCAGAAGAGAC
CAACGTCTCTTCGGCACCGGTATCGACACTGTTCGTTGCAGAAGGTGGAG
TTGGCGTGCGCAAGATGGCCCTGGGTACCGGAGGCGGCGACACCAGCATC
AGCGCCAGCATCGGCCCCACCAGCGGCGGGAAAGGTGCGGTGTCTCCTCC
AACAACTGCCGTGGCGGCGATCACCGCAGCCGGCGTACTGCTGCTCCCCG
GTTACGATCTTAGCGGGAACGGTGACAGCTTGGGCGGTGGCAGAAAGGCA
GAAGAGACCAACGTCTCTTCGGCACCGGTATCGACACTGTTCGTTGCAGA
AGGTGGAGTTGGCGTGCGCAAGATGGCCCTGGGTACCGGAGGCGGCGACA
CCAGCATCAGCGCCAGCATCGGCCCCACCAGC
back to top