mRNA_H-canaliculatus_F_contig10800.760.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10800.760.1
Unique NamemRNA_H-canaliculatus_F_contig10800.760.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: D7FS88_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS88_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.970e-17
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLR 123
            VP+IS+++WHPFTISSCPDDRET H+IKDMGP TFTGKLR
Sbjct:  183 VPAISVVQWHPFTISSCPDDRETTHHIKDMGPDTFTGKLR 222
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A6H5KA77_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA77_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 9.920e-17
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLR 123
            VP+IS+++WHPFTISSCPDDRET H+IKDMGP TFTGKLR
Sbjct:  667 VPAISVVQWHPFTISSCPDDRETTHHIKDMGPDTFTGKLR 706
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A6U4V3Q6_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A6U4V3Q6_NEODS)

HSP 1 Score: 61.2 bits (147), Expect = 9.000e-10
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLR 123
            +P+ISLL+WHPFTISS P D  T  +IKDMGP TFT  LR
Sbjct:   65 IPAISLLQWHPFTISSTPGDDVTQMHIKDMGPGTFTHALR 104
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A7S2UV64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV64_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.060e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKL 120
            VP+IS L+WHPFTISS P D  T ++IK+MGP TFT  L
Sbjct:  184 VPAISTLQWHPFTISSAPSDNATTNHIKNMGPGTFTDSL 222
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: F2U8H2_SALR5 (FAD-binding FR-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8H2_SALR5)

HSP 1 Score: 53.5 bits (127), Expect = 5.450e-7
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKL 120
            VP IS +EWHPFT+SS P   +   ++K+MGP TFT KL
Sbjct:   79 VPCISHMEWHPFTVSSPPSADKLTLHVKNMGPNTFTAKL 117
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: W2QN98_PHYPN (FAD-binding FR-type domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QN98_PHYPN)

HSP 1 Score: 49.3 bits (116), Expect = 1.830e-5
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLRCGTARREA 147
            +PSIS LEWHPFTI+S P +     YIK +G   +T KL     +REA
Sbjct:  347 IPSISYLEWHPFTIASSPHEAMVTFYIKAVGD--WTTKLLTAALKREA 392
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A0G4J701_PLABS (FAD-binding FR-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J701_PLABS)

HSP 1 Score: 48.9 bits (115), Expect = 2.510e-5
Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    7 PSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKL 120
            P +S+ +WHPFTISS P + + + +++ MGP+++TGK+
Sbjct:  259 PHVSIGQWHPFTISSAPQEADVSVHMRVMGPSSWTGKV 296
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A3P3Y5T6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y5T6_PLABS)

HSP 1 Score: 48.9 bits (115), Expect = 2.510e-5
Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    7 PSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKL 120
            P +S+ +WHPFTISS P + + + +++ MGP+++TGK+
Sbjct:  522 PHVSIGQWHPFTISSAPQEADVSVHMRVMGPSSWTGKV 559
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A485KGQ8_9STRA (Aste57867_4583 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGQ8_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.670e-5
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLRCGTA 135
            +PS+SL+EWHPF+    PD    A  +K MG   FT K  C  A
Sbjct:  185 IPSVSLIEWHPFSAVVAPDGNSIAFCVKAMGANRFTDKAVCVVA 228
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BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Match: A0A7S4G168_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G168_9EUGL)

HSP 1 Score: 48.1 bits (113), Expect = 4.690e-5
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    4 VPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLR 123
            +PS+S +++HPF+ +  P  +  +  IKDMGP TFTG LR
Sbjct:  424 IPSVSGVQYHPFSAACAPGSKTLSFLIKDMGPGTFTGGLR 463
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10800.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FS88_ECTSI5.970e-1782.50Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KA77_9PHAE9.920e-1782.50FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A6U4V3Q6_NEODS9.000e-1067.50Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A7S2UV64_9STRA2.060e-964.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F2U8H2_SALR55.450e-756.41FAD-binding FR-type domain-containing protein n=1 ... [more]
W2QN98_PHYPN1.830e-550.00FAD-binding FR-type domain-containing protein n=10... [more]
A0A0G4J701_PLABS2.510e-544.74FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A3P3Y5T6_PLABS2.510e-544.74Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A485KGQ8_9STRA4.670e-545.45Aste57867_4583 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S4G168_9EUGL4.690e-547.50Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10800contigH-canaliculatus_F_contig10800:306..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7FS88
Preferred nameFRO1
KEGG koko:K00521
GOsGO:0000293,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006091,GO:0006810,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009987,GO:0015688,GO:0015979,GO:0016020,GO:0016491,GO:0016722,GO:0016723,GO:0019684,GO:0022900,GO:0042592,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771,GO:1901678
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928746.3043642-CDS-H-canaliculatus_F_contig10800:305..4521622928746.3043642-CDS-H-canaliculatus_F_contig10800:305..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10800 306..452 +
1696845548.353248-CDS-H-canaliculatus_F_contig10800:305..4521696845548.353248-CDS-H-canaliculatus_F_contig10800:305..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10800 306..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10800.760.1prot_H-canaliculatus_F_contig10800.760.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10800 306..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10800.760.1

>prot_H-canaliculatus_F_contig10800.760.1 ID=prot_H-canaliculatus_F_contig10800.760.1|Name=mRNA_H-canaliculatus_F_contig10800.760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=49bp
QVPSISLLEWHPFTISSCPDDRETAHYIKDMGPTTFTGKLRCGTARREA
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mRNA from alignment at H-canaliculatus_F_contig10800:306..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10800.760.1 ID=mRNA_H-canaliculatus_F_contig10800.760.1|Name=mRNA_H-canaliculatus_F_contig10800.760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=147bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10800:306..452+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCCTTCCATCAGCCTCCTGGAATGGCATCCGTTCACGATCTCGTC
CTGCCCCGACGACCGTGAGACGGCCCACTACATCAAGGACATGGGCCCCA
CGACCTTCACGGGGAAGCTCAGGTGCGGGACGGCTCGACGAGAGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10800:306..452+

>mRNA_H-canaliculatus_F_contig10800.760.1 ID=mRNA_H-canaliculatus_F_contig10800.760.1|Name=mRNA_H-canaliculatus_F_contig10800.760.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10800:306..452+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCCTTCCATCAGCCTCCTGGAATGGCATCCGTTCACGATCTCGTC
CTGCCCCGACGACCGTGAGACGGCCCACTACATCAAGGACATGGGCCCCA
CGACCTTCACGGGGAAGCTCAGGTGCGGGACGGCTCGACGAGAGGCGCAG
GTGCCTTCCATCAGCCTCCTGGAATGGCATCCGTTCACGATCTCGTCCTG
CCCCGACGACCGTGAGACGGCCCACTACATCAAGGACATGGGCCCCACGA
CCTTCACGGGGAAGCTCAGGTGCGGGACGGCTCGACGAGAGGCG
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