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Homology
BLAST of mRNA_H-canaliculatus_F_contig1080.757.1 vs. uniprot
Match: D8LF11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF11_ECTSI) HSP 1 Score: 275 bits (702), Expect = 5.830e-87 Identity = 176/302 (58.28%), Postives = 197/302 (65.23%), Query Frame = 1
Query: 106 MFSVRVVRGTGVVQRGLWSSSSGSGSTCPT------RAAGARGSTASVGSWTSLMAIRGTAAVSTHGYEGTRAAIPSAGAAALGLHQGRHLSDRSTGGGRXXXXXMGPFDTGRR--TVAETGDVKDGEEKEAYEFLSKDDLGRLSSQRKAEGAIKPGTAAGTAATTEEKEETGSVTLWQRWKNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS 987
M V + RG GV QRGL S GS C + RA S AS GS +S A R +A VS H E R + A+ L +HLS GG G D RR T Y FL KDDLGRLS++ K+ +K TAA A EEK + +VTLWQRWK ARAKMKLLWKQYGLVWIGTYTVLYFGGLAG+YVVLDTGLVASDVDTS AIQ++AD +GAQDN +V WLQNTIKTNPKANTLLKAVIVNEL+EYPRDIVAIAATPSIARA+GRAPPK K+
Sbjct: 3 MAMVALRRGAGVFQRGLRQQSRPRGSACLSQQAKVPRACNTAVSVASFGSRSSPTAGRWSACVSVHRNEDLRPLVSPVVPVAVALRSVQHLSSSGRGG----REKRGGADKRRRSNTXXXXXXXXXXXXXXEYTFLEKDDLGRLSNEPKS--GLKTDTAAARGA--EEKVDATNVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKAKT 296
BLAST of mRNA_H-canaliculatus_F_contig1080.757.1 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL) HSP 1 Score: 59.3 bits (142), Expect = 1.680e-6 Identity = 43/142 (30.28%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 616 QRWKNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKT----------------NPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS*K 993
++ K+ +K+K LW+QYG+V +GTY +YF L +YV ++ G V+ T + + A + NV N + T N K + + A + + E R V +A TP IAR +GRAP K+ K
Sbjct: 87 EKGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVS----TKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAPKLPKAPK 224
BLAST of mRNA_H-canaliculatus_F_contig1080.757.1 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE) HSP 1 Score: 59.3 bits (142), Expect = 2.010e-6 Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 640 KMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNAN--VKWLQN--------TIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAP 972
++K LW++YG V +GTY LY L +Y+ +D G V +D ++ + + N VKW ++ + N K + L A I + E R + +AATP IAR +GRAP
Sbjct: 92 RLKDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENFDLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAP 212
BLAST of mRNA_H-canaliculatus_F_contig1080.757.1 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 8.230e-6 Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 625 KNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQN-------TIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKV 981
K + +++ LW++YG V IGTY +YFG +A Y + D G++ S A V + + + +W Q + + +A + + A ++LE R + AIA TP +ARA+GRAP KV
Sbjct: 324 KESSNRLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTSLPSGGTA---VIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKV 446
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | mitochondrion |
Ec32 ortholog description | Domain of unknown function DUF1279 |
Ec32 ortholog | Ec-21_006290.1 |
Exons | 5 |
Model size | 1195 |
Cds size | 885 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928745.6414824-UTR-H-canaliculatus_F_contig1080:14048..14153 | 1622928745.6414824-UTR-H-canaliculatus_F_contig1080:14048..14153 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 14049..14153 + |
1696845548.0403144-UTR-H-canaliculatus_F_contig1080:14048..14153 | 1696845548.0403144-UTR-H-canaliculatus_F_contig1080:14048..14153 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 14049..14153 + |
1622928745.7446744-UTR-H-canaliculatus_F_contig1080:17055..17260 | 1622928745.7446744-UTR-H-canaliculatus_F_contig1080:17055..17260 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 17056..17260 + |
1696845548.0991733-UTR-H-canaliculatus_F_contig1080:17055..17260 | 1696845548.0991733-UTR-H-canaliculatus_F_contig1080:17055..17260 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 17056..17260 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928745.6549819-CDS-H-canaliculatus_F_contig1080:14153..14284 | 1622928745.6549819-CDS-H-canaliculatus_F_contig1080:14153..14284 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 14154..14284 + |
1696845548.0507233-CDS-H-canaliculatus_F_contig1080:14153..14284 | 1696845548.0507233-CDS-H-canaliculatus_F_contig1080:14153..14284 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 14154..14284 + |
1622928745.6757202-CDS-H-canaliculatus_F_contig1080:14845..15137 | 1622928745.6757202-CDS-H-canaliculatus_F_contig1080:14845..15137 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 14846..15137 + |
1696845548.0589113-CDS-H-canaliculatus_F_contig1080:14845..15137 | 1696845548.0589113-CDS-H-canaliculatus_F_contig1080:14845..15137 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 14846..15137 + |
1622928745.6912801-CDS-H-canaliculatus_F_contig1080:15499..15582 | 1622928745.6912801-CDS-H-canaliculatus_F_contig1080:15499..15582 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 15500..15582 + |
1696845548.067097-CDS-H-canaliculatus_F_contig1080:15499..15582 | 1696845548.067097-CDS-H-canaliculatus_F_contig1080:15499..15582 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 15500..15582 + |
1622928745.7102559-CDS-H-canaliculatus_F_contig1080:16153..16301 | 1622928745.7102559-CDS-H-canaliculatus_F_contig1080:16153..16301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 16154..16301 + |
1696845548.0759099-CDS-H-canaliculatus_F_contig1080:16153..16301 | 1696845548.0759099-CDS-H-canaliculatus_F_contig1080:16153..16301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 16154..16301 + |
1622928745.725981-CDS-H-canaliculatus_F_contig1080:16824..17055 | 1622928745.725981-CDS-H-canaliculatus_F_contig1080:16824..17055 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 16825..17055 + |
1696845548.0867386-CDS-H-canaliculatus_F_contig1080:16824..17055 | 1696845548.0867386-CDS-H-canaliculatus_F_contig1080:16824..17055 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 16825..17055 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1080.757.1 >prot_H-canaliculatus_F_contig1080.757.1 ID=prot_H-canaliculatus_F_contig1080.757.1|Name=mRNA_H-canaliculatus_F_contig1080.757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=295bp
MFSVRVVRGTGVVQRGLWSSSSGSGSTCPTRAAGARGSTASVGSWTSLMA IRGTAAVSTHGYEGTRAAIPSAGAAALGLHQGRHLSDRSTGGGRGRGRGM GPFDTGRRTVAETGDVKDGEEKEAYEFLSKDDLGRLSSQRKAEGAIKPGT AAGTAATTEEKEETGSVTLWQRWKNARAKMKLLWKQYGLVWIGTYTVLYF GGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKTN PKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS* back to topmRNA from alignment at H-canaliculatus_F_contig1080:14049..17260+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1080.757.1 ID=mRNA_H-canaliculatus_F_contig1080.757.1|Name=mRNA_H-canaliculatus_F_contig1080.757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:14049..17260+ (Hapterophycus canaliculatus Oshoro5f female) CTTGACTCGAGCCTTAGACCAGGAGGCAGGGTCAGCGCCACACAGCTCTG
ATCGGGGAGGTGGACGTGTTGTGTTCTACTGCATCCTATTGGGTGCCCAC
GTGCGATGTTTTCCGTGCGAGTAGTACGTGGGACTGGTGTGGTACAGCGA
GGTCTCTGGAGCAGTAGTTCAGGAAGCGGTTCCACATGTCCTACAAGAGC
AGCAGGAGCCAGGGGCTCGACCGCCAGTGTCGGCAGGTGAGAAAGGACGC
CCGCTGCGAACCACTACTCCCGGCGAAGTCCAAACACTGAGTGAGCGTAG
TCCATCCCGTTGGGGGAAAATGGCAAGCAGCCAGCCTCGCGACATAATCA
AGTTTTGATATCCTGGCCTCTGGTGAGAGTCATGCCGCGATTGCGCGTCG
TTTGGTTTTTTCTCAGGAGGCGCAGCAGGCTTTCAGATCTGCCGTAGCAC
TTCACGGCGACGAAGGTGGTTGCGTGCCTATAGGAGGTTAGCTGCGCCAG
CGCGTAGGTAAAAGATTTAAGTGTCAGGAGTTGTGATGCGCTTGACATCC
GTCGCCAAACCGCAAAGGATCAACAGCACGCATCCGACACTGGAAATGAG
ACCAACCCTCCTGATACCCACGCTCTCCGCGCTCCCGTTGTATGCGCGTG
TGCTGTCATCCCATTTTTAGTGGATCGCTCGACATCTTTGCAATACAATT
TGTATTTCTTGTCCCCACCCGGGATCGCACGGGGAGTTTAGTTTTGCACA
ATTGAATGTAAACTTACTGCTTTCGTCACATGTCCCCCTCGCAACAGCTG
GACCTCGCTCATGGCTATCAGGGGCACTGCTGCAGTGTCCACGCATGGAT
ACGAAGGTACTAGAGCAGCGATACCGTCGGCAGGAGCGGCAGCGCTGGGG
CTGCACCAAGGGCGGCACTTGTCTGATCGCTCAACCGGAGGAGGACGAGG
AAGAGGAAGGGGCATGGGCCCGTTTGATACGGGGCGAAGAACTGTCGCCG
AGACTGGGGATGTTAAGGATGGCGAGGAGAAGGAGGCTTACGAGTTCCTC
TCGAAGGACGATCTCGGCAGACTGTCCAGCCAGAGGAAGGCGAGTGTCAA
CGAAAATGGGACAGATTATGCCCGGTTTCCATCCGACTCCGGTGTTGTTC
GTCTTTTCGCAGGCTTTGTTTATAGGACGTTACCGACAGCCCCCTACGCG
AAAGTTGCTGCGTTTCTGCGAGCGAAGCCGATTGCATTGCATGCGCACCG
GACGCAAAAAAGACCGCCCTCGGCTCCCCTTACAGCCGTCCGATCTACAC
TAACGCTTTATGTTGCACACCACGTGCCGAATTTGTGTAGAAGCATGTGG
CGAATTTGTCCCCAGCAGGTTTCTCGGTTCACCCCGGGAAGGCGGATGTG
AAGTTTGTTGTCGCCATGCCTCATGCCACCAGTCACTGCGTTGTCCGACA
GGCCGAGGGTGCGATCAAGCCGGGCACAGCCGCAGGCACGGCGGCAACCA
CGGAGGAAAAGGAGGAAACCGGAAGCGTGACCTTGTGAGTGCCGTGGAAG
TAGCGTTACAACACACGAACCTTCGCCCAGCACCACCGGTGCAAGCAGCC
GGGTTAAGTCGCACGCACAGTAGTGCAGAATTCAAGTTGCGTCTGCGCCG
ATCGGCATTGAGTGAGCTTGCGGGTTTGCTTGTGAAGGTAATACCCTTGG
TTCGTCGTGATTGTCTCTCCTACCGGGGAGGTCCTCCTTGCGCCTACAGC
CGCGGTTCCTTTTGGGTGTACAAGACCGGTCTTTCTCCGGTGGTCTAGCA
GCAGCTTCGTTCATAGCAGCAGCCGTGGCAGTGGCGGCATTGCCGATGGT
AGTGCACGAGGCCACCAAAAGTATTTTGAACACCGCCTTCGTCCACCCTA
CGAGGAAAGTCGCGACTACGCAACGGACACACCATCAGCATCACTCACGG
CCTTGAGCGCATGACGAGCGACCTTGTTTTGATGTGTTTCGTGAGAATTG
GGTTGGGGTGATGAACCAATACGCGAGTCTCTGAATAGAGGCGCACTTCG
CTGCTCTGGTTATGCCGCTGCTGCCGTCTTCACGTAATCTTCGCTGCAAG
AACAGGTGGCAGCGCTGGAAGAATGCAAGGGCCAAGATGAAATTGCTCTG
GAAGCAGTACGGTCTCGTATGGATTGGGACATACACAGTTCTCTACTTTG
GGGGGCTCGCTGGGGTCTACGTGGTATTGGATACGGGCCTTGTGGCGTCG
GATGTGAGTCTTGAAAAATTATGCTCGGGGCATGCCCAGCACTGCTGTGT
AGGCAGCAATGAGATGTCATTCATGCGCTGGAGTCTTGGCCTTGGTGTTG
CATTTTGGCCTAAACAACATAGCCACGTACTTTTAAGCGAACGAAACACT
TGCGGTTTAGTCTATATTCCTCGCAAGTGGATTTGGGCAAAAACGGCCTC
TTGAAATTCGGGAAAGCACTTGAACAGCTCCTCTATCCTTCGCCGTTACC
GCCTGGCCGTTTCTGCCGGGGAGGAACCGGCTGGTGTGTTGGAGCCCCCT
ATCATGTCTTCTTGCCCTGTATGTATCGTTGGCGCAAGAGGACTGCGTCC
TCCTCGTTCGGGTAGCGACAAATCTGAATGTATGGTGGCCGGAAGTGCTT
GTGCCAGATAGTGGTTGTCGGGCACGTGCGATGCATGGACAAAGCACAAG
CAAAATTCCATCGAGGAACCAGTTCTTTAGAATAGTACCTTTTGAACGAT
GATCCGACTACTCGTGGACCCTTCAGGTGGACACATCTGCAGCGATCCAA
CTCGTCGCAGACCAGCTCGGCGCTCAAGATAACGCCAACGTCAAGTGGCT
CCAGAACACCATCAAGACGAACCCGAAGGCTAACACTCTCCTCAAAGCCG
TCATCGTCAACGAGCTCCTCGAGTACCCCCGAGACATAGTAGCCATTGCA
GCGACACCGTCCATTGCGCGCGCCATTGGCCGAGCTCCACCCAAGGTTAA
GAGCTGAAAAGGGTAGACCTCGTACATGAGGCCAAGTTGATATTTTGCGC
CTCGGGTCTCAGTGGCATTGCTGGGGTCCCTGCATTTTTGTTGCAGGCTA
GAGGAGCTTCATTGGACTATTTTGGAACATTAAGACCTTGTGCGATCCGC
GTTTTCATTGCATTTCAATCATTTATTTCTTGACTTATTTTGTGCACCTG
AGATCCCACATG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:14049..17260+ >mRNA_H-canaliculatus_F_contig1080.757.1 ID=mRNA_H-canaliculatus_F_contig1080.757.1|Name=mRNA_H-canaliculatus_F_contig1080.757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:14049..17260+ (Hapterophycus canaliculatus Oshoro5f female) ATGTTTTCCGTGCGAGTAGTACGTGGGACTGGTGTGGTACAGCGAGGTCT CTGGAGCAGTAGTTCAGGAAGCGGTTCCACATGTCCTACAAGAGCAGCAG GAGCCAGGGGCTCGACCGCCAGTGTCGGCAGATGTTTTCCGTGCGAGTAG TACGTGGGACTGGTGTGGTACAGCGAGGTCTCTGGAGCAGTAGTTCAGGA AGCGGTTCCACATGTCCTACAAGAGCAGCAGGAGCCAGGGGCTCGACCGC CAGTGTCGGCAGCTGGACCTCGCTCATGGCTATCAGGGGCACTGCTGCAG TGTCCACGCATGGATACGAAGGTACTAGAGCAGCGATACCGTCGGCAGGA GCGGCAGCGCTGGGGCTGCACCAAGGGCGGCACTTGTCTGATCGCTCAAC CGGAGGAGGACGAGGAAGAGGAAGGGGCATGGGCCCGTTTGATACGGGGC GAAGAACTGTCGCCGAGACTGGGGATGTTAAGGATGGCGAGGAGAAGGAG GCTTACGAGTTCCTCTCGAAGGACGATCTCGGCAGACTGTCCAGCCAGAG GAAGCTGGACCTCGCTCATGGCTATCAGGGGCACTGCTGCAGTGTCCACG CATGGATACGAAGGTACTAGAGCAGCGATACCGTCGGCAGGAGCGGCAGC GCTGGGGCTGCACCAAGGGCGGCACTTGTCTGATCGCTCAACCGGAGGAG GACGAGGAAGAGGAAGGGGCATGGGCCCGTTTGATACGGGGCGAAGAACT GTCGCCGAGACTGGGGATGTTAAGGATGGCGAGGAGAAGGAGGCTTACGA GTTCCTCTCGAAGGACGATCTCGGCAGACTGTCCAGCCAGAGGAAGGCCG AGGGTGCGATCAAGCCGGGCACAGCCGCAGGCACGGCGGCAACCACGGAG GAAAAGGAGGAAACCGGAAGCGTGACCTTGCCGAGGGTGCGATCAAGCCG GGCACAGCCGCAGGCACGGCGGCAACCACGGAGGAAAAGGAGGAAACCGG AAGCGTGACCTTGTGGCAGCGCTGGAAGAATGCAAGGGCCAAGATGAAAT TGCTCTGGAAGCAGTACGGTCTCGTATGGATTGGGACATACACAGTTCTC TACTTTGGGGGGCTCGCTGGGGTCTACGTGGTATTGGATACGGGCCTTGT GGCGTCGGATGTGGCAGCGCTGGAAGAATGCAAGGGCCAAGATGAAATTG CTCTGGAAGCAGTACGGTCTCGTATGGATTGGGACATACACAGTTCTCTA CTTTGGGGGGCTCGCTGGGGTCTACGTGGTATTGGATACGGGCCTTGTGG CGTCGGATGTGGACACATCTGCAGCGATCCAACTCGTCGCAGACCAGCTC GGCGCTCAAGATAACGCCAACGTCAAGTGGCTCCAGAACACCATCAAGAC GAACCCGAAGGCTAACACTCTCCTCAAAGCCGTCATCGTCAACGAGCTCC TCGAGTACCCCCGAGACATAGTAGCCATTGCAGCGACACCGTCCATTGCG CGCGCCATTGGCCGAGCTCCACCCAAGGTTAAGAGCTGAGTGGACACATC TGCAGCGATCCAACTCGTCGCAGACCAGCTCGGCGCTCAAGATAACGCCA ACGTCAAGTGGCTCCAGAACACCATCAAGACGAACCCGAAGGCTAACACT CTCCTCAAAGCCGTCATCGTCAACGAGCTCCTCGAGTACCCCCGAGACAT AGTAGCCATTGCAGCGACACCGTCCATTGCGCGCGCCATTGGCCGAGCTC CACCCAAGGTTAAGAGCTGA back to top
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