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Homology
BLAST of mRNA_H-canaliculatus_F_contig1080.756.1 vs. uniprot
Match: D8LF29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF29_ECTSI) HSP 1 Score: 153 bits (387), Expect = 2.390e-40 Identity = 87/169 (51.48%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 4 HWEDPTLLHMVYLDLLRTNGWAELRPLSLDLPPCACCHQDISRGQQSEETRRTSRAHAGGHRC-GIIAQGIAGTVAEEDGVHRNRNDDDGPGAEVSTLKKVVFAVNAGCALPTRRFSDVVAAAEEYLLRLDASGTDARNDGRHLRSRVLAAFCDGSSIIYYSVSSGIDT 507
HWED LLH+ DL+R +GW ++R L LPPC CC +D S GQ +++ R G +RC G IA G+ TV EE +R+ + D P + +VFAVNAG +PTRRFSDVVAAAEE L R+D T+ R+ + R VLAAFCDGSSIIYY+VSSGIDT
Sbjct: 10 HWEDSMLLHV---DLVRKSGWTDVRSTLLHLPPCVCCRRDSSHGQPLQDSPRVPPEPGGNNRCCGKIAHGLVATVGEERNCNRDGDLGDVPVELPAASTTIVFAVNAGRTIPTRRFSDVVAAAEERL-RIDFRATEGRDQLQ--RPCVLAAFCDGSSIIYYTVSSGIDT 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | tRNA-splicing endonuclease subunit Sen15 |
| Ec32 ortholog | Ec-21_006500.1 |
| Exons | 4 |
| Model size | 1637 |
| Cds size | 480 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928745.5123868-UTR-H-canaliculatus_F_contig1080:10866..11993 | 1622928745.5123868-UTR-H-canaliculatus_F_contig1080:10866..11993 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 10867..11993 - |
| 1696845547.9806185-UTR-H-canaliculatus_F_contig1080:10866..11993 | 1696845547.9806185-UTR-H-canaliculatus_F_contig1080:10866..11993 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 10867..11993 - |
| 1622928745.6024487-UTR-H-canaliculatus_F_contig1080:13804..13834 | 1622928745.6024487-UTR-H-canaliculatus_F_contig1080:13804..13834 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 13805..13834 - |
| 1696845548.0315697-UTR-H-canaliculatus_F_contig1080:13804..13834 | 1696845548.0315697-UTR-H-canaliculatus_F_contig1080:13804..13834 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1080 13805..13834 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928745.5284197-CDS-H-canaliculatus_F_contig1080:11993..12027 | 1622928745.5284197-CDS-H-canaliculatus_F_contig1080:11993..12027 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 11994..12027 - |
| 1696845547.996326-CDS-H-canaliculatus_F_contig1080:11993..12027 | 1696845547.996326-CDS-H-canaliculatus_F_contig1080:11993..12027 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 11994..12027 - |
| 1622928745.5483418-CDS-H-canaliculatus_F_contig1080:12631..12763 | 1622928745.5483418-CDS-H-canaliculatus_F_contig1080:12631..12763 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 12632..12763 - |
| 1696845548.0055435-CDS-H-canaliculatus_F_contig1080:12631..12763 | 1696845548.0055435-CDS-H-canaliculatus_F_contig1080:12631..12763 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 12632..12763 - |
| 1622928745.56764-CDS-H-canaliculatus_F_contig1080:13168..13479 | 1622928745.56764-CDS-H-canaliculatus_F_contig1080:13168..13479 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 13169..13479 - |
| 1696845548.0151637-CDS-H-canaliculatus_F_contig1080:13168..13479 | 1696845548.0151637-CDS-H-canaliculatus_F_contig1080:13168..13479 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 13169..13479 - |
| 1622928745.5842297-CDS-H-canaliculatus_F_contig1080:13801..13804 | 1622928745.5842297-CDS-H-canaliculatus_F_contig1080:13801..13804 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 13802..13804 - |
| 1696845548.0233183-CDS-H-canaliculatus_F_contig1080:13801..13804 | 1696845548.0233183-CDS-H-canaliculatus_F_contig1080:13801..13804 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1080 13802..13804 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1080.756.1 >prot_H-canaliculatus_F_contig1080.756.1 ID=prot_H-canaliculatus_F_contig1080.756.1|Name=mRNA_H-canaliculatus_F_contig1080.756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
MVYLDLLRTNGWAELRPLSLDLPPCACCHQDISRGQQSEETRRTSRAHAG
GHRCGIIAQGIAGTVAEEDGVHRNRNDDDGPGAEVSTLKKVVFAVNAGCA
LPTRRFSDVVAAAEEYLLRLDASGTDARNDGRHLRSRVLAAFCDGSSIIY
YSVSSGIDT* back to topmRNA from alignment at H-canaliculatus_F_contig1080:10867..13834- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1080.756.1 ID=mRNA_H-canaliculatus_F_contig1080.756.1|Name=mRNA_H-canaliculatus_F_contig1080.756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2968bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:10867..13834- (Hapterophycus canaliculatus Oshoro5f female)
CGTCACTGGGAAGACCCGACGCTGCTGCACATGGTATGTGGGATGCCCTC
TGTGGATTTTGAAATTTGAATTTCGAAGCCACACAACACTGCAAGTACTC
TTTCGTATGAATCCCTTGTCAGAGCAGTATGATAGTCGTCTTCGTGCTGA
GTCGTGCTCATGTACATCTTGCCGTCTACCATGCTACTTGGCTTGATGCC
TCACTCGTCCATCAACTCGAATAAGGAACAAGATGGGCAATATATAGGCC
ATAAAGAACTATGAACAACCCCATGGACAAGTTCGCGAACCACCTTCGAG
CGGAGATTGTCTCTGTTGCCTGATGCATCGCACTCGTTTCGACCACCGAA
CTAAGGTTTACCTGGACCTCCTCCGGACGAACGGGTGGGCCGAGCTCAGA
CCGCTTTCCCTGGACCTTCCCCCCTGCGCCTGCTGCCATCAAGACATCAG
CCGTGGACAGCAAAGCGAAGAAACACGTCGGACATCACGGGCACATGCAG
GCGGTCATCGCTGCGGCATCATTGCTCAAGGAATTGCTGGGACCGTGGCA
GAAGAGGACGGCGTTCACCGCAATAGGAACGATGATGATGGCCCCGGGGC
GGAGGTATCTACGCTGAAAAAGGTGGTGTTCGCTGTGAATGCAGGGTGCG
CGCTTCCGACACGGAGGTAAGTGGAAACCCCACCTACCTTGTCCGGCAGC
TTGATGTCTCGTCATGCATGCATACCGTTCCTGCTCTTCGATGGGATACG
CGATTGGCATCCCTGGATACACTGCTGTAGTGTTGCGATCCCATGTGAAC
TGGTTTCAGTCAAGTGATGTTACATGATAAGATTCTTCGCGGCTTGATTT
ACCTTGATCTTGGTTGGGTGACCAACAGAACCAGTCATTAGTTTTACCGA
TTACTACTTCGAACGGTCCTACGCGACCCACGCTGGCTGAAGGGATGCAC
AACACCTAGCAGTCAAGACGACCGCCTCGCTGCTGCTTCGACGCACACCG
CTGCATGTTCACGGGCATAGAACCGTTACCTTCGTTCCTCCTTTTAAAAT
CGTGCGTTACCTGCCCTGCAGATTCAGCGACGTCGTGGCGGCCGCAGAAG
AGTACCTATTGCGGTTGGACGCCAGCGGCACAGACGCTCGCAACGACGGA
CGTCATCTTCGATCCCGCGTTTTGGCGGCATTCTGTGATGGATCCAGCAT
CATGTGAGGATATCCTTGAATTGTACGTGCAAGGTGTGATCTAGAAGTAT
CCTGACAACCCGCACGACACTTTCGGGCACCGTAGGAGAGGGTCTGCAGA
GCTGACGGAACCTTGAAGGACGGACATAGCCTGGGTACATCGTAATACCC
GGGGGGCATCTCTAGGCACACCTTGGGTACTCTTGAAAACCTCTGGACTG
TATGGGACCCGGCTCGGAAGTCTAGGCCCATGGATATCACAGAACTTTAG
TGCAGAACTTTAGTGTGCGGTACTGGAGGGCACGCCTGACTCAGGTAGGT
TTGGGGTTTGGCTTGCAACACCCGGTCAAGTACCGTGGGCATACAAAAAT
CGGCAATCTAAAGGACCACACCTTTTCCATTTCCGGCCGTTTTGTCGGTC
ACGACACGGCACCGTTTGGCTACCCACCTTCGTTGCCATACGTATTGACA
GCGGCCTCACTTCTCGGGTTCGAAGCTTTCCGCGCACGTACTGCTGTCAT
GTTTGCCCCAGCCACCCTCACGCATTGACGATTCGCAGTTGTCGGCATCC
CTTCCTGACGCCGCCTACCTTTGCCCATCTGCCTGCCCTTTGCCCGTCTG
CCTCTAGCTACTATTCCGTGTCCAGCGGGATTGATACGTGATGTACCGCA
TGAGACGAGCGGAACGGCGCCAGAGATTTTGGACGCACGCCTTGCGGCGC
CAGGTCTGTGTGTGTTTGCGCGCGCGACCTAAACACTTGTAAGGCGGGGC
AGCCAGAGTTGCAGCCGCCAGGTGCTTATCGCGGACTTGCTAAACCAAGT
ATTTTTCTGGGCGCCAGTAACAAGGTAGGAGGCCAACTCGCCACGACCTG
GACCGCTGAGAATCTGACCCATCTGTCACGTAGTGCGACACGAGGACCCA
CACGAGGACCCACCCACACTACTATACCCATCCCCCTGGAACAACCGAAA
GAGTCCCCGTTTATTTTGCGCTTTCCGCCTTCCTAAGTGACAGCTGTTAA
TCCTATAATATCATACCGTTGCTTTTGACTTGTGTTTGCTGCACCAGGTA
GCTTCGGACCTTCATTTCACGCCCAGAAGTAGCATGAGCACTTGGGAGCG
TAGGCAGATGGAGGGCCTTGGACGATTGAATGGGCTCAATCTTGAAGCGT
GTAGGGAGAGAGGGATGCTTAGCTCGCTCGCCGGGTGGCGGAATGGCGCC
ATTGTTCTCGCAAGGTTAAATCGCGCAATCCATGGGTTTGATCGCGGGGA
CAAAGCGTTCCTAACCTCCGCTTGTTTTTAATCGGAAACACGGAGATGCT
AACGCTCATTTTCTAGCCACATAAAGCGTGTGGCGTGCTGGTGGGGATTC
TCTGCACACCAGCCGTTTGGGGTCCCTGCGGTTGAGACGGCGTTGACTGT
TTGTGCTCAACTCGCCGCAGGCGAACCCTGTAGGGGATCGCCTCTGGACT
GGACTTGTAGGTGTCGTCGAACATGTTTGGTGCGTTGGTGATGCGTTGGG
TGGATCGGTTGGGAGTTTGATGGGCCGCTGGAATGATTGCGGGGAATGAA
TGATCGACGACGGCATCGCGATGACACCTATCGCCGCCGTGTACGAGTTT
GAAAGACGAGTGTTTGTGCGTGTATGTGCGTAACAAAATCGAAACACCAA
CGCGTGCCTTCCTTTCCCTCCCTCACCCTCTTTCATTCATGTATTTTGTG
TTCCAACCGACGTAGAGCCCAGCGTCGCGGGAAAAAAAATGAAATGGACG
AACCCAAAGAAATCGAAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:10867..13834- >mRNA_H-canaliculatus_F_contig1080.756.1 ID=mRNA_H-canaliculatus_F_contig1080.756.1|Name=mRNA_H-canaliculatus_F_contig1080.756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:10867..13834- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGTTTACCTGGACCTCCTCCGGACGAACGGGTGGGCCGAGCTCAG
ACCGCTTTCCCTGGACCTTCCCCCCTGCGCCTGCTGCCATCAAGACATCA
GCCGTGGACAGCAAAGCGAAGAAACACGTCGGACATCACGGGCACATGCA
GGCGGTCATCGCTGCGGCATCATTGCTCAAGGAATTGCTGGGACCGTGGC
AGAAGAGGACGGCGTTCACCGCAATAGGAACGATGATGATGGCCCCGGGG
CGGAGGTATCTACGCTGAAAAAGGTGGTGTTCGCTGTGAATGCAGGGTGC
GCGCTTCCGACACGGAGGTTTACCTGGACCTCCTCCGGACGAACGGGTGG
GCCGAGCTCAGACCGCTTTCCCTGGACCTTCCCCCCTGCGCCTGCTGCCA
TCAAGACATCAGCCGTGGACAGCAAAGCGAAGAAACACGTCGGACATCAC
GGGCACATGCAGGCGGTCATCGCTGCGGCATCATTGCTCAAGGAATTGCT
GGGACCGTGGCAGAAGAGGACGGCGTTCACCGCAATAGGAACGATGATGA
TGGCCCCGGGGCGGAGGTATCTACGCTGAAAAAGGTGGTGTTCGCTGTGA
ATGCAGGGTGCGCGCTTCCGACACGGAGATTCAGCGACGTCGTGGCGGCC
GCAGAAGAGTACCTATTGCGGTTGGACGCCAGCGGCACAGACGCTCGCAA
CGACGGACGTCATCTTCGATCCCGCGTTTTGGCGGCATTCTGTGATGGAT
CCAGCATCATATTCAGCGACGTCGTGGCGGCCGCAGAAGAGTACCTATTG
CGGTTGGACGCCAGCGGCACAGACGCTCGCAACGACGGACGTCATCTTCG
ATCCCGCGTTTTGGCGGCATTCTGTGATGGATCCAGCATCATCTACTATT
CCGTGTCCAGCGGGATTGATACGTGACTACTATTCCGTGTCCAGCGGGAT
TGATACGTGA back to top
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