mRNA_H-canaliculatus_F_contig10799.745.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10799.745.1
Unique NamemRNA_H-canaliculatus_F_contig10799.745.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10799.745.1 vs. uniprot
Match: A0A6H5KSU2_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.940e-24
Identity = 56/92 (60.87%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   87 MTEGVPYRLPLAYVPDGALAIVLSFGTVKELLATSVVCRSWVLDGNRVELWASLGKSFEVTMPVSLGPQ-------HGGRIAFGGKGRRMLR 341
            M E     LPLA++PDGALAIV SF  V +LL+ + VCR WVLDG RV LWASLGK FEVTMPVSLGPQ         G  A GG+G+R+LR
Sbjct:    1 MAERGTCHLPLAFIPDGALAIVFSFLAVNDLLSANKVCRDWVLDGTRVNLWASLGKIFEVTMPVSLGPQTSQRAAGSNGATAGGGRGKRVLR 92
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BLAST of mRNA_H-canaliculatus_F_contig10799.745.1 vs. uniprot
Match: D7FJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ95_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.570e-24
Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 3 
Query:   36 YSSCVDLDLVRILQSVAMTEGVPYRLPLAYVPDGALAIVLSFGTVKELLATSVVCRSWVLDGNRVELWASLGKSFEVTMPVSLGPQHG-------GRIAFGGKGRRMLR 341
            YSSCV          + M E     LPLA++PDGALAIV SF  V +LL+ + VCR WVLDG RV+LWASLGK FEV MPVSLGPQ         G  A GG+G+R+LR
Sbjct:   28 YSSCV----------ITMAEKGTCHLPLAFIPDGALAIVFSFVAVNDLLSANKVCRDWVLDGTRVDLWASLGKIFEVAMPVSLGPQTSQRAAGSTGATAGGGRGKRVLR 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10799.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSU2_9PHAE1.940e-2460.87F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FJ95_ECTSI2.570e-2455.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10799contigH-canaliculatus_F_contig10799:2..1219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size739
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10799.745.1prot_H-canaliculatus_F_contig10799.745.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10799 262..1133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928743.1281676-UTR-H-canaliculatus_F_contig10799:1..2611622928743.1281676-UTR-H-canaliculatus_F_contig10799:1..261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10799 2..261 -
1696845547.0163057-UTR-H-canaliculatus_F_contig10799:1..2611696845547.0163057-UTR-H-canaliculatus_F_contig10799:1..261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10799 2..261 -
1622928743.186871-UTR-H-canaliculatus_F_contig10799:1133..12191622928743.186871-UTR-H-canaliculatus_F_contig10799:1133..1219Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10799 1134..1219 -
1696845547.0402758-UTR-H-canaliculatus_F_contig10799:1133..12191696845547.0402758-UTR-H-canaliculatus_F_contig10799:1133..1219Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10799 1134..1219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928743.146407-CDS-H-canaliculatus_F_contig10799:261..5461622928743.146407-CDS-H-canaliculatus_F_contig10799:261..546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10799 262..546 -
1696845547.024599-CDS-H-canaliculatus_F_contig10799:261..5461696845547.024599-CDS-H-canaliculatus_F_contig10799:261..546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10799 262..546 -
1622928743.1628842-CDS-H-canaliculatus_F_contig10799:1025..11331622928743.1628842-CDS-H-canaliculatus_F_contig10799:1025..1133Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10799 1026..1133 -
1696845547.0325067-CDS-H-canaliculatus_F_contig10799:1025..11331696845547.0325067-CDS-H-canaliculatus_F_contig10799:1025..1133Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10799 1026..1133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10799.745.1

>prot_H-canaliculatus_F_contig10799.745.1 ID=prot_H-canaliculatus_F_contig10799.745.1|Name=mRNA_H-canaliculatus_F_contig10799.745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp
MTEGVPYRLPLAYVPDGALAIVLSFGTVKELLATSVVCRSWVLDGNRVEL
WASLGKSFEVTMPVSLGPQHGGRIAFGGKGRRMLRFVPRLELLMYEVGVS
NLLEAKSTPRYRIINSEFRMDIFALDFWVI*
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mRNA from alignment at H-canaliculatus_F_contig10799:2..1219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10799.745.1 ID=mRNA_H-canaliculatus_F_contig10799.745.1|Name=mRNA_H-canaliculatus_F_contig10799.745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1218bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10799:2..1219- (Hapterophycus canaliculatus Oshoro5f female)
GTCAGCAGCAGTCTTAGCATTGGTCTGTGAGGTTATACTCCTCCTGCGTC
GACCTCGACCTTGTTCGTATATTACAGTCAGTTGCGATGACGGAGGGGGT
TCCATATCGTTTGCCCTTGGCGTACGTACCGGATGGTGCGCTTGCGATCG
TGCTCTCGTTTGGAACAGTCAAGGAGCTCCTCGCTACGAGTGTTGTAAGT
ATCCTGCGGCAATCCTTTTGGGGTGTTCCTTTTGTACAAGTACTTTGGTA
GTCAGAATTGGACTTACCTTTGGTGTGCGGGAAGGACGCCCGAACTTCAT
TTGCACCGCCGCAAGATGTATGAAATGCAGGGGAAATGTTTGAACTCGCG
CCAAGAAACAAGGAACAGGAAAGCTGAAAGCTGCCAGACAGAAAAGTCGG
AAGGACTCATTTTATTGTGCTCTGCCTTGTATTATAGTCTGACGCAACAC
AGAGCACCCGGTTCCTGGTTGCTGCAGCAGCAGGAAAGCTCAGAGAAAGG
ATTGGATTGGCGGAGGGAACCACCAGAAGTCATTAAGAATTCATAAGACC
GGCAACCTCAACGATGCTGTGGAACCGATGGGGCGTCGGCGGCAGAAGCG
CTGCCGGCACTCACGCGCTGACTTTGTGGTCCTTCCCCCTACACTCCACG
ACGTGCATGTATTCGGAAACCAGGTGTGCCGATCGTGGGTGCTGGATGGG
AACAGGGTAGAGTTGTGGGCGTCACTGGGCAAGAGCTTCGAGGTTACAAT
GCCTGTTTCTCTGGGACCACAGCATGGTGGGCGAATCGCCTTTGGAGGCA
AAGGGAGGCGAATGCTAAGGTTTGTCCCCCGTCTTGAGCTATTGATGTAC
GAAGTAGGTGTCTCCAACCTACTTGAGGCAAAAAGCACGCCCAGATATCG
TATTATCAATAGTGAGTTTCGGATGGACATTTTTGCGTTAGATTTTTGGG
TTATATAGATCAGAATCTCAGCCACCGCCGCGCGTACAACCTTGGCTTAG
ATTTTTTTGCTGTCTAGGACCCAACCATCTAAGGCAAGAGCGGCGCTGGG
AAATACCTTAGATTCTGCCACAAACTTGAGCGATATGCATCGACACAGAG
AGATAGATGAAGCTGTGGGCTTCAATAAAGCAAGGTAGCGATGCATAACT
GAGAGACGGATGAGATGCCTGCTTTACCGTGCTCGTTCTTGTCAGCACCT
ATCCTCTGACAGCAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10799:2..1219-

>mRNA_H-canaliculatus_F_contig10799.745.1 ID=mRNA_H-canaliculatus_F_contig10799.745.1|Name=mRNA_H-canaliculatus_F_contig10799.745.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10799:2..1219- (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGAGGGGGTTCCATATCGTTTGCCCTTGGCGTACGTACCGGATGG
TGCGCTTGCGATCGTGCTCTCGTTTGGAACAGTCAAGGAGCTCCTCGCTA
CGAGTGTTATGACGGAGGGGGTTCCATATCGTTTGCCCTTGGCGTACGTA
CCGGATGGTGCGCTTGCGATCGTGCTCTCGTTTGGAACAGTCAAGGAGCT
CCTCGCTACGAGTGTTGTGTGCCGATCGTGGGTGCTGGATGGGAACAGGG
TAGAGTTGTGGGCGTCACTGGGCAAGAGCTTCGAGGTTACAATGCCTGTT
TCTCTGGGACCACAGCATGGTGGGCGAATCGCCTTTGGAGGCAAAGGGAG
GCGAATGCTAAGGTTTGTCCCCCGTCTTGAGCTATTGATGTACGAAGTAG
GTGTCTCCAACCTACTTGAGGCAAAAAGCACGCCCAGATATCGTATTATC
AATAGTGAGTTTCGGATGGACATTTTTGCGTTAGATTTTTGGGTTATATA
GGTGTGCCGATCGTGGGTGCTGGATGGGAACAGGGTAGAGTTGTGGGCGT
CACTGGGCAAGAGCTTCGAGGTTACAATGCCTGTTTCTCTGGGACCACAG
CATGGTGGGCGAATCGCCTTTGGAGGCAAAGGGAGGCGAATGCTAAGGTT
TGTCCCCCGTCTTGAGCTATTGATGTACGAAGTAGGTGTCTCCAACCTAC
TTGAGGCAAAAAGCACGCCCAGATATCGTATTATCAATAGTGAGTTTCGG
ATGGACATTTTTGCGTTAGATTTTTGGGTTATATAG
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