mRNA_H-canaliculatus_F_contig10798.744.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10798.744.1
Unique NamemRNA_H-canaliculatus_F_contig10798.744.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10798.744.1 vs. uniprot
Match: D7FS29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS29_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.590e-17
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QGPISDGTPCAGCDDRTQPVMIEPDGAWYCEACIEEFYEE 120
            QGP SD TPCAGCDD+TQPV IEPDG WYCEACI+EFYEE
Sbjct:  287 QGPKSDDTPCAGCDDKTQPVAIEPDGKWYCEACIQEFYEE 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10798.744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS29_ECTSI4.590e-1785.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10798contigH-canaliculatus_F_contig10798:4225..4362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928743.0793743-CDS-H-canaliculatus_F_contig10798:4224..43621622928743.0793743-CDS-H-canaliculatus_F_contig10798:4224..4362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10798 4225..4362 -
1696845547.007145-CDS-H-canaliculatus_F_contig10798:4224..43621696845547.007145-CDS-H-canaliculatus_F_contig10798:4224..4362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10798 4225..4362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10798.744.1prot_H-canaliculatus_F_contig10798.744.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10798 4225..4362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10798.744.1

>prot_H-canaliculatus_F_contig10798.744.1 ID=prot_H-canaliculatus_F_contig10798.744.1|Name=mRNA_H-canaliculatus_F_contig10798.744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
QGPISDGTPCAGCDDRTQPVMIEPDGAWYCEACIEEFYEEQEDQDE
back to top

mRNA from alignment at H-canaliculatus_F_contig10798:4225..4362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10798.744.1 ID=mRNA_H-canaliculatus_F_contig10798.744.1|Name=mRNA_H-canaliculatus_F_contig10798.744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10798:4225..4362- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGTCCGATCAGCGACGGCACTCCGTGCGCGGGCTGCGACGACCGGAC
TCAGCCCGTGATGATAGAGCCGGACGGTGCCTGGTACTGCGAGGCCTGCA
TAGAGGAGTTCTACGAGGAACAGGAGGATCAAGACGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10798:4225..4362-

>mRNA_H-canaliculatus_F_contig10798.744.1 ID=mRNA_H-canaliculatus_F_contig10798.744.1|Name=mRNA_H-canaliculatus_F_contig10798.744.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10798:4225..4362- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGTCCGATCAGCGACGGCACTCCGTGCGCGGGCTGCGACGACCGGAC
TCAGCCCGTGATGATAGAGCCGGACGGTGCCTGGTACTGCGAGGCCTGCA
TAGAGGAGTTCTACGAGGAACAGGAGGATCAAGACGAGCAGGGTCCGATC
AGCGACGGCACTCCGTGCGCGGGCTGCGACGACCGGACTCAGCCCGTGAT
GATAGAGCCGGACGGTGCCTGGTACTGCGAGGCCTGCATAGAGGAGTTCT
ACGAGGAACAGGAGGATCAAGACGAG
back to top