mRNA_H-canaliculatus_F_contig10793.741.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10793.741.1
Unique NamemRNA_H-canaliculatus_F_contig10793.741.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10793.741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10793contigH-canaliculatus_F_contig10793:2928..3963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1036
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10793.741.1prot_H-canaliculatus_F_contig10793.741.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10793 3119..3847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.8344338-UTR-H-canaliculatus_F_contig10793:2927..31181622928742.8344338-UTR-H-canaliculatus_F_contig10793:2927..3118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10793 2928..3118 +
1696845546.9251668-UTR-H-canaliculatus_F_contig10793:2927..31181696845546.9251668-UTR-H-canaliculatus_F_contig10793:2927..3118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10793 2928..3118 +
1622928742.8699422-UTR-H-canaliculatus_F_contig10793:3847..39631622928742.8699422-UTR-H-canaliculatus_F_contig10793:3847..3963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10793 3848..3963 +
1696845546.941756-UTR-H-canaliculatus_F_contig10793:3847..39631696845546.941756-UTR-H-canaliculatus_F_contig10793:3847..3963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10793 3848..3963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.85373-CDS-H-canaliculatus_F_contig10793:3118..38471622928742.85373-CDS-H-canaliculatus_F_contig10793:3118..3847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10793 3119..3847 +
1696845546.9332416-CDS-H-canaliculatus_F_contig10793:3118..38471696845546.9332416-CDS-H-canaliculatus_F_contig10793:3118..3847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10793 3119..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10793.741.1

>prot_H-canaliculatus_F_contig10793.741.1 ID=prot_H-canaliculatus_F_contig10793.741.1|Name=mRNA_H-canaliculatus_F_contig10793.741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=243bp
MARSKGTAPLRHFVPFARSSSKQRPRRQLSRKQNHPSSSSSSSSNNNNNN
HSHYSDKVVSRSLLPLKCACCVHFFRRRVSVGGGERTSSGNHTRAEKPLL
LFFTCERCCCQWREETRETRSCGRSARGRSACVRTTHHDTKGCEAKDTPA
LSSRAPFSPTLLSLARYANETSVSPRFGRCDQTSAARVFLPTPLHLPLYT
SLSRLSLSPRPLAPSWRRRGRRQQQLHHKQLQQQQQQRPETF*
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mRNA from alignment at H-canaliculatus_F_contig10793:2928..3963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10793.741.1 ID=mRNA_H-canaliculatus_F_contig10793.741.1|Name=mRNA_H-canaliculatus_F_contig10793.741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10793:2928..3963+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCCTCCCCTCGGCGGGACAGGCCGGTTGAATCGTATCCTGGTCAGCCT
GGCGCAACAAAAGCGGAAAACACTCACCGAGCAGACCAGTCAGGGCGCTT
TCTCCCTCAGACGGATTAAAAAACACACGTAGGCTCCTTGCTCATTCTTT
CTGGCAGGCGCAACCGCCCGTGCGTGCCTGCATTCGTCTTGATGGCACGG
TCAAAGGGAACAGCCCCACTTCGTCACTTCGTGCCTTTTGCTCGCTCGAG
TTCGAAACAACGACCGCGACGGCAGCTATCTAGAAAACAGAACCACCCAA
GCAGCAGCAGCAGCAGCAGCAGCAATAACAACAACAACAACCACAGCCAC
TACAGTGACAAGGTTGTGTCACGATCGCTCCTCCCGCTAAAATGTGCGTG
CTGCGTCCACTTCTTTCGACGCCGCGTCTCCGTGGGGGGTGGTGAACGAA
CCTCCAGCGGAAACCATACACGGGCGGAAAAACCACTCCTACTCTTTTTT
ACCTGCGAACGCTGCTGTTGCCAGTGGCGCGAAGAGACTCGAGAGACACG
CAGCTGCGGGAGGAGCGCGAGAGGCAGGAGCGCATGCGTGCGCACGACCC
ACCACGATACGAAAGGTTGCGAGGCGAAGGACACGCCAGCGCTTTCGAGC
CGTGCCCCTTTCTCGCCCACCCTCTTGTCCCTCGCCCGCTACGCCAACGA
AACATCTGTCTCCCCTCGGTTCGGTCGCTGCGACCAAACCTCAGCCGCAC
GGGTCTTCCTCCCTACACCCCTACACCTCCCTCTCTATACCTCCCTCTCT
CGTCTCTCCCTCTCGCCACGTCCTCTGGCGCCATCATGGCGACGGCGAGG
ACGGCGACAGCAACAGCTACACCACAAGCAACTACAGCAACAACAACAAC
AACGCCCCGAAACCTTCTAGTGGCGAAAATCAACTGGTGCAATAAGATCC
ACCTTCTACTTTCAGGGCACTGCCGCTCTCTTGCACACGCAGCAACCCAG
CGGCGTACGCGCACGCTCTCGGTGCCCCCCTACCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10793:2928..3963+

>mRNA_H-canaliculatus_F_contig10793.741.1 ID=mRNA_H-canaliculatus_F_contig10793.741.1|Name=mRNA_H-canaliculatus_F_contig10793.741.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1458bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10793:2928..3963+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACGGTCAAAGGGAACAGCCCCACTTCGTCACTTCGTGCCTTTTGC
TCGCTCGAGTTCGAAACAACGACCGCGACGGCAGCTATCTAGAAAACAGA
ACCACCCAAGCAGCAGCAGCAGCAGCAGCAGCAATAACAACAACAACAAC
CACAGCCACTACAGTGACAAGGTTGTGTCACGATCGCTCCTCCCGCTAAA
ATGTGCGTGCTGCGTCCACTTCTTTCGACGCCGCGTCTCCGTGGGGGGTG
GTGAACGAACCTCCAGCGGAAACCATACACGGGCGGAAAAACCACTCCTA
CTCTTTTTTACCTGCGAACGCTGCTGTTGCCAGTGGCGCGAAGAGACTCG
AGAGACACGCAGCTGCGGGAGGAGCGCGAGAGGCAGGAGCGCATGCGTGC
GCACGACCCACCACGATACGAAAGGTTGCGAGGCGAAGGACACGCCAGCG
CTTTCGAGCCGTGCCCCTTTCTCGCCCACCCTCTTGTCCCTCGCCCGCTA
CGCCAACGAAACATCTGTCTCCCCTCGGTTCGGTCGCTGCGACCAAACCT
CAGCCGCACGGGTCTTCCTCCCTACACCCCTACACCTCCCTCTCTATACC
TCCCTCTCTCGTCTCTCCCTCTCGCCACGTCCTCTGGCGCCATCATGGCG
ACGGCGAGGACGGCGACAGCAACAGCTACACCACAAGCAACTACAGCAAC
AACAACAACAACGCCCCGAAACCTTCTAGATGGCACGGTCAAAGGGAACA
GCCCCACTTCGTCACTTCGTGCCTTTTGCTCGCTCGAGTTCGAAACAACG
ACCGCGACGGCAGCTATCTAGAAAACAGAACCACCCAAGCAGCAGCAGCA
GCAGCAGCAGCAATAACAACAACAACAACCACAGCCACTACAGTGACAAG
GTTGTGTCACGATCGCTCCTCCCGCTAAAATGTGCGTGCTGCGTCCACTT
CTTTCGACGCCGCGTCTCCGTGGGGGGTGGTGAACGAACCTCCAGCGGAA
ACCATACACGGGCGGAAAAACCACTCCTACTCTTTTTTACCTGCGAACGC
TGCTGTTGCCAGTGGCGCGAAGAGACTCGAGAGACACGCAGCTGCGGGAG
GAGCGCGAGAGGCAGGAGCGCATGCGTGCGCACGACCCACCACGATACGA
AAGGTTGCGAGGCGAAGGACACGCCAGCGCTTTCGAGCCGTGCCCCTTTC
TCGCCCACCCTCTTGTCCCTCGCCCGCTACGCCAACGAAACATCTGTCTC
CCCTCGGTTCGGTCGCTGCGACCAAACCTCAGCCGCACGGGTCTTCCTCC
CTACACCCCTACACCTCCCTCTCTATACCTCCCTCTCTCGTCTCTCCCTC
TCGCCACGTCCTCTGGCGCCATCATGGCGACGGCGAGGACGGCGACAGCA
ACAGCTACACCACAAGCAACTACAGCAACAACAACAACAACGCCCCGAAA
CCTTCTAG
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