mRNA_H-canaliculatus_F_contig10788.738.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10788.738.1
Unique NamemRNA_H-canaliculatus_F_contig10788.738.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10788.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10788contigH-canaliculatus_F_contig10788:3186..4498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size187
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.5049236-CDS-H-canaliculatus_F_contig10788:3185..32851622928742.5049236-CDS-H-canaliculatus_F_contig10788:3185..3285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 3186..3285 -
1696845546.807945-CDS-H-canaliculatus_F_contig10788:3185..32851696845546.807945-CDS-H-canaliculatus_F_contig10788:3185..3285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 3186..3285 -
1622928742.5226362-CDS-H-canaliculatus_F_contig10788:4412..44981622928742.5226362-CDS-H-canaliculatus_F_contig10788:4412..4498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 4413..4498 -
1696845546.823105-CDS-H-canaliculatus_F_contig10788:4412..44981696845546.823105-CDS-H-canaliculatus_F_contig10788:4412..4498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10788 4413..4498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10788.738.1prot_H-canaliculatus_F_contig10788.738.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10788 3186..4498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10788.738.1

>prot_H-canaliculatus_F_contig10788.738.1 ID=prot_H-canaliculatus_F_contig10788.738.1|Name=mRNA_H-canaliculatus_F_contig10788.738.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
LQGVSSRDEGNVRRLSRDWATERARPPFRERARKALNKVGERIGVGRHTP
FEAVVEQQQQQ*
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mRNA from alignment at H-canaliculatus_F_contig10788:3186..4498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10788.738.1 ID=mRNA_H-canaliculatus_F_contig10788.738.1|Name=mRNA_H-canaliculatus_F_contig10788.738.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1313bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10788:3186..4498- (Hapterophycus canaliculatus Oshoro5f female)
CTTCAAGGAGTTAGCTCAAGGGATGAAGGAAATGTTCGACGTCTTTCAAG
GGATTGGGCAACAGAGCGGGCCCGCCCACCCTTCAGGCACGTCTAGAGTC
GAGATTCGGCAGAGGGTAGAAATCGAGAAATGGACTGGAGATGTAGGCAA
AGGAGAAAGTTTGCAAACCAAATTCAGGGTGTTTGAGAGTTCATTCCGCG
CTTATCTCTCTACAGAAAATTTGTCTGACGTGCTGGAATACGAGGACATT
TATGTGGGATTGCCGGACATTGATTTGGACATGCTCAGAAGAACAAAAGG
GCAAGAACGAGTTGACAAGTCATTGCGTGTCTGGCATACACTTCTTGCTA
AAACTTCTGGAATGGTTCAACATATGATCCTCTCGACTGGTAGTCCTCAG
CAAGGATGGAGGGCCTTCGTCTCCCAGCACAGAGAAAACTTTGACAGGGA
AGGAGAGCGATTAGAGAGAGAATGGAATGAGTTAAGGCAGGGAGATAACG
AGGATGTGATGGATTACCTCCGGAGGGGGCAAACTATTCAAATGAACATG
AATTCTCGTTTGGGTCCTAGTGGCCATGGTCGAAAGAGCGAAGAGTTTAG
ACGTCGTGATCAACGAAGTGGTTCGCCCACGTCGGGTACTGAGGCTCAGG
GGGGCTGCGACTGATACATGGGTTACGGAGAGGAAAGCGATAGTGGACAC
CCCCGCTCCAACAAGCGCTGTTCGACTGCGGGTATCAGCGCCGTGCCCAA
GGGGGCAAAGGGCTGGTCGTTCGCGTAGGACTTGGCATAGAGCGCCTGAT
CAGGGCTAGCATGGCGTCGCAAGCCCCCAATCTCTCACCAAAACCAAGCC
GACCCCTCTGAAGCCGATGCCACCACGGTTACCACCACAGCTACTATCGC
TCCCGCTCCCGCTTGGGCCATCAACCTTGACCTCGCTTTTGGGGCTGCTA
CGTCCAACCTCATGGCGGCCAGCAGGAAAGTTATGAAAAAATCGGCAGGA
AAGGCAGCCATCGAGGTTGGCTAAGATCATCTTCGACCTGTACAGGTCGC
CAAACGGGTGGAGGTCGGGATTTGAAAGACCAGCCAGGACGCAAAAGACG
ATGCCTGGGTGCACGTTGCCTTGGTCAATGAGGAGGTTGATGCACAGCGG
CGCCTGCAAGGCTCGGGAGAACAAGTTAATCTGGAACCGCCCCCGAAACT
TCTGACGCCACAGGGAAAGAGCTCGAAAGGCGCTCAACAAGGTGGGGGAG
AGGATCGGCGTGGGTCGCCACACTCCTTTCGAGGCTGTGGTGGAGCAGCA
GCAGCAGCAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10788:3186..4498-

>mRNA_H-canaliculatus_F_contig10788.738.1 ID=mRNA_H-canaliculatus_F_contig10788.738.1|Name=mRNA_H-canaliculatus_F_contig10788.738.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10788:3186..4498- (Hapterophycus canaliculatus Oshoro5f female)
CTTCAAGGAGTTAGCTCAAGGGATGAAGGAAATGTTCGACGTCTTTCAAG
GGATTGGGCAACAGAGCGGGCCCGCCCACCCTTCAGCTTCAAGGAGTTAG
CTCAAGGGATGAAGGAAATGTTCGACGTCTTTCAAGGGATTGGGCAACAG
AGCGGGCCCGCCCACCCTTCAGGGAAAGAGCTCGAAAGGCGCTCAACAAG
GTGGGGGAGAGGATCGGCGTGGGTCGCCACACTCCTTTCGAGGCTGTGGT
GGAGCAGCAGCAGCAGCAGTAGGGAAAGAGCTCGAAAGGCGCTCAACAAG
GTGGGGGAGAGGATCGGCGTGGGTCGCCACACTCCTTTCGAGGCTGTGGT
GGAGCAGCAGCAGCAGCAGTAG
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